| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is oppD [H]
Identifier: 158424319
GI number: 158424319
Start: 3055032
End: 3055997
Strand: Reverse
Name: oppD [H]
Synonym: AZC_2695
Alternate gene names: 158424319
Gene position: 3055997-3055032 (Counterclockwise)
Preceding gene: 158424320
Following gene: 158424318
Centisome position: 56.91
GC content: 69.98
Gene sequence:
>966_bases ATGCTGGAGGTGCGCGATCTCTCCATTGATCTCACCCGGCCGGACGGCGGTCGGCTGCGGGTGGTGAATGACGTGTCCTT CGCGCTGGAGCGGGGCCGCACGCTGGGCATCGTGGGCGAATCCGGCTCGGGCAAGTCCATGCTGCTCAAGGCCATCATCG GCCTTCTGCCCGGCCCCATGCGGGCGGGCGGGCAGATCAGGCTCGATGGCGACAACCTGCTCGCCCTCACCGAGGCGCAG ATGTGCGCGGTGCGCGGGCGGCGCATCGGCATGATCTTTCAGGAGCCCATGACGGCGCTCAATCCCGCGCAGCGCATCGG CGACCAGATCTCCGAAGGCATCCTCTGGCACCGCCATATTTCCCGCGCCGAGGCCCGGCGGGAGGCACTGGAATGGCTGG AGCGCGTGCGCATCCCGGATGCGGCGCGCAGGCTCGACACCTATCCCCACGAAATGTCCGGCGGCCAGCGCCAGCGGGTG GGCATCGCCATCGCGCTTGCCATGCGGCCGGGCCTGCTGATCGCTGACGAGCCGACGACGGCGCTCGATGTGACCGTGCA GGCGGAAATCCTCGACATCTTCGACGAGATGGTGCGCGACTTGGGCGTCGCGCTCATCCTCGTCAGCCATGATCTGGGCG TGGTCGGCCGTATCGCGGACGAGACACTGGTCATGTATGCGGGCACCCGCATGGAGGCGGGACCGACTGGGGATGTGCTG CGCCACCCGCGCCATCCCTATACGCAGGGCCTTCTGGCAGCGATGCCCCGCCGGGGCGGCGGGAGGAGCGGGGATCTGCC GACCATTCCCGGCACGGTGCCATCGCTCGCCGCTCTGCCGCCGGGTTGCCGCTTCGCCAATCGCTGCGCCCGCGCGGACG ACGGCTGCCGGGCGGCGGAGCCCGTGTGGGCTGGCGAACCCGATGCCGGCATCCGCTGCATCCATGCGGGCAAGGTGGCG GCATGA
Upstream 100 bases:
>100_bases TAGTGCCGGGCATCGCCATCGCGCTCAGCGTGCTGGGCTTCAACCTGCTGGGGGATGGCCTGCGCGACCTCATCGACCCG CGCCGGAGGCTCGGCGGCTG
Downstream 100 bases:
>100_bases GCGCGCCGGCCCTCTTGGAGGTGTGCAACCTCATCCGTGACTATCCTGCCGGGCCGGCCCCCCTGTTCGGCCGCCGGGCC ACCGTGAGGGCGCTGGATAG
Product: oligopeptide/dipeptide ABC transporter ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MLEVRDLSIDLTRPDGGRLRVVNDVSFALERGRTLGIVGESGSGKSMLLKAIIGLLPGPMRAGGQIRLDGDNLLALTEAQ MCAVRGRRIGMIFQEPMTALNPAQRIGDQISEGILWHRHISRAEARREALEWLERVRIPDAARRLDTYPHEMSGGQRQRV GIAIALAMRPGLLIADEPTTALDVTVQAEILDIFDEMVRDLGVALILVSHDLGVVGRIADETLVMYAGTRMEAGPTGDVL RHPRHPYTQGLLAAMPRRGGGRSGDLPTIPGTVPSLAALPPGCRFANRCARADDGCRAAEPVWAGEPDAGIRCIHAGKVA A
Sequences:
>Translated_321_residues MLEVRDLSIDLTRPDGGRLRVVNDVSFALERGRTLGIVGESGSGKSMLLKAIIGLLPGPMRAGGQIRLDGDNLLALTEAQ MCAVRGRRIGMIFQEPMTALNPAQRIGDQISEGILWHRHISRAEARREALEWLERVRIPDAARRLDTYPHEMSGGQRQRV GIAIALAMRPGLLIADEPTTALDVTVQAEILDIFDEMVRDLGVALILVSHDLGVVGRIADETLVMYAGTRMEAGPTGDVL RHPRHPYTQGLLAAMPRRGGGRSGDLPTIPGTVPSLAALPPGCRFANRCARADDGCRAAEPVWAGEPDAGIRCIHAGKVA A >Mature_321_residues MLEVRDLSIDLTRPDGGRLRVVNDVSFALERGRTLGIVGESGSGKSMLLKAIIGLLPGPMRAGGQIRLDGDNLLALTEAQ MCAVRGRRIGMIFQEPMTALNPAQRIGDQISEGILWHRHISRAEARREALEWLERVRIPDAARRLDTYPHEMSGGQRQRV GIAIALAMRPGLLIADEPTTALDVTVQAEILDIFDEMVRDLGVALILVSHDLGVVGRIADETLVMYAGTRMEAGPTGDVL RHPRHPYTQGLLAAMPRRGGGRSGDLPTIPGTVPSLAALPPGCRFANRCARADDGCRAAEPVWAGEPDAGIRCIHAGKVA A
Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=250, Percent_Identity=28, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4505771, Length=250, Percent_Identity=28, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9961252, Length=250, Percent_Identity=28, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI42741659, Length=225, Percent_Identity=28.4444444444444, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI255708477, Length=240, Percent_Identity=28.3333333333333, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI171184400, Length=252, Percent_Identity=26.5873015873016, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI156105685, Length=251, Percent_Identity=29.0836653386454, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI9665248, Length=243, Percent_Identity=27.9835390946502, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI9955966, Length=181, Percent_Identity=32.5966850828729, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI45243524, Length=181, Percent_Identity=32.5966850828729, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9955968, Length=181, Percent_Identity=32.5966850828729, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI48994883, Length=307, Percent_Identity=48.8599348534202, Blast_Score=294, Evalue=5e-81, Organism=Escherichia coli, GI1787759, Length=300, Percent_Identity=48.6666666666667, Blast_Score=269, Evalue=2e-73, Organism=Escherichia coli, GI1789963, Length=302, Percent_Identity=43.7086092715232, Blast_Score=249, Evalue=2e-67, Organism=Escherichia coli, GI145693107, Length=277, Percent_Identity=46.9314079422383, Blast_Score=238, Evalue=4e-64, Organism=Escherichia coli, GI1788506, Length=258, Percent_Identity=45.7364341085271, Blast_Score=217, Evalue=1e-57, Organism=Escherichia coli, GI1789962, Length=283, Percent_Identity=39.2226148409894, Blast_Score=213, Evalue=1e-56, Organism=Escherichia coli, GI1787500, Length=326, Percent_Identity=38.0368098159509, Blast_Score=211, Evalue=5e-56, Organism=Escherichia coli, GI1787548, Length=307, Percent_Identity=37.4592833876222, Blast_Score=207, Evalue=9e-55, Organism=Escherichia coli, GI1787758, Length=322, Percent_Identity=33.5403726708075, Blast_Score=167, Evalue=7e-43, Organism=Escherichia coli, GI1789890, Length=254, Percent_Identity=37.007874015748, Blast_Score=154, Evalue=5e-39, Organism=Escherichia coli, GI48994997, Length=255, Percent_Identity=40.3921568627451, Blast_Score=153, Evalue=1e-38, Organism=Escherichia coli, GI1787547, Length=258, Percent_Identity=35.2713178294574, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI1786398, Length=236, Percent_Identity=34.3220338983051, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1789891, Length=220, Percent_Identity=35.9090909090909, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1789032, Length=231, Percent_Identity=33.7662337662338, Blast_Score=120, Evalue=9e-29, Organism=Escherichia coli, GI1790162, Length=256, Percent_Identity=30.078125, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1789672, Length=238, Percent_Identity=31.0924369747899, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1788761, Length=259, Percent_Identity=31.6602316602317, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1786872, Length=240, Percent_Identity=32.0833333333333, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI87081791, Length=263, Percent_Identity=33.0798479087452, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1786703, Length=215, Percent_Identity=35.8139534883721, Blast_Score=107, Evalue=9e-25, Organism=Escherichia coli, GI1788225, Length=236, Percent_Identity=31.7796610169492, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI1787029, Length=253, Percent_Identity=30.0395256916996, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87081834, Length=199, Percent_Identity=35.1758793969849, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1787712, Length=236, Percent_Identity=30.5084745762712, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1787089, Length=213, Percent_Identity=32.8638497652582, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI87081709, Length=227, Percent_Identity=29.5154185022026, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=32.3943661971831, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1787370, Length=232, Percent_Identity=27.1551724137931, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1790739, Length=227, Percent_Identity=32.5991189427313, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1788450, Length=247, Percent_Identity=29.1497975708502, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1788644, Length=250, Percent_Identity=32, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790190, Length=220, Percent_Identity=31.8181818181818, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786563, Length=222, Percent_Identity=31.0810810810811, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789991, Length=222, Percent_Identity=28.3783783783784, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1787105, Length=214, Percent_Identity=33.1775700934579, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1790467, Length=242, Percent_Identity=27.6859504132231, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789586, Length=225, Percent_Identity=30.2222222222222, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786803, Length=225, Percent_Identity=27.5555555555556, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788165, Length=219, Percent_Identity=30.1369863013699, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786253, Length=218, Percent_Identity=31.1926605504587, Blast_Score=82, Evalue=7e-17, Organism=Escherichia coli, GI1786345, Length=231, Percent_Identity=29.4372294372294, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788053, Length=216, Percent_Identity=31.4814814814815, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786698, Length=221, Percent_Identity=27.6018099547511, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI48995001, Length=216, Percent_Identity=31.0185185185185, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI48994943, Length=233, Percent_Identity=27.4678111587983, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI87082267, Length=244, Percent_Identity=25.4098360655738, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1790525, Length=240, Percent_Identity=29.5833333333333, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787164, Length=208, Percent_Identity=30.7692307692308, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1790534, Length=228, Percent_Identity=29.3859649122807, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1790544, Length=227, Percent_Identity=27.7533039647577, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1789864, Length=236, Percent_Identity=25.8474576271186, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787143, Length=257, Percent_Identity=28.7937743190661, Blast_Score=68, Evalue=9e-13, Organism=Escherichia coli, GI87082268, Length=236, Percent_Identity=23.728813559322, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787792, Length=276, Percent_Identity=26.4492753623188, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788897, Length=219, Percent_Identity=28.310502283105, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1789593, Length=244, Percent_Identity=26.6393442622951, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193209708, Length=239, Percent_Identity=32.6359832635983, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17558664, Length=237, Percent_Identity=28.6919831223629, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI193202349, Length=225, Percent_Identity=28.4444444444444, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193208177, Length=228, Percent_Identity=27.1929824561404, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17569143, Length=237, Percent_Identity=30.8016877637131, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17567265, Length=240, Percent_Identity=27.0833333333333, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17541710, Length=240, Percent_Identity=29.5833333333333, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115534520, Length=233, Percent_Identity=27.0386266094421, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17565938, Length=251, Percent_Identity=25.8964143426295, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=256, Percent_Identity=28.125, Blast_Score=91, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6324498, Length=220, Percent_Identity=24.0909090909091, Blast_Score=63, Evalue=7e-11, Organism=Drosophila melanogaster, GI85726357, Length=243, Percent_Identity=29.6296296296296, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24641565, Length=244, Percent_Identity=30.327868852459, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI23397593, Length=238, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24582014, Length=195, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24582012, Length=195, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI17136662, Length=227, Percent_Identity=28.6343612334802, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 34553; Mature: 34553
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEVRDLSIDLTRPDGGRLRVVNDVSFALERGRTLGIVGESGSGKSMLLKAIIGLLPGPM CCEEEEEEEEEECCCCCEEEEECHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCC RAGGQIRLDGDNLLALTEAQMCAVRGRRIGMIFQEPMTALNPAQRIGDQISEGILWHRHI CCCCEEEECCCCEEEEHHHHHHHHCCCEEEEEHHCCHHHCCHHHHHHHHHHHCHHHHHHH SRAEARREALEWLERVRIPDAARRLDTYPHEMSGGQRQRVGIAIALAMRPGLLIADEPTT HHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHCCCCCEEEEEEEEEEEECCCEEEECCCCC ALDVTVQAEILDIFDEMVRDLGVALILVSHDLGVVGRIADETLVMYAGTRMEAGPTGDVL EEEEEEHHHHHHHHHHHHHHHCEEEEEEECCCCCEEHHCCCEEEEEECCCCCCCCCCHHH RHPRHPYTQGLLAAMPRRGGGRSGDLPTIPGTVPSLAALPPGCRFANRCARADDGCRAAE CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHCCCCCCCCCC PVWAGEPDAGIRCIHAGKVAA CCCCCCCCCCEEEEECCCCCC >Mature Secondary Structure MLEVRDLSIDLTRPDGGRLRVVNDVSFALERGRTLGIVGESGSGKSMLLKAIIGLLPGPM CCEEEEEEEEEECCCCCEEEEECHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCC RAGGQIRLDGDNLLALTEAQMCAVRGRRIGMIFQEPMTALNPAQRIGDQISEGILWHRHI CCCCEEEECCCCEEEEHHHHHHHHCCCEEEEEHHCCHHHCCHHHHHHHHHHHCHHHHHHH SRAEARREALEWLERVRIPDAARRLDTYPHEMSGGQRQRVGIAIALAMRPGLLIADEPTT HHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHCCCCCEEEEEEEEEEEECCCEEEECCCCC ALDVTVQAEILDIFDEMVRDLGVALILVSHDLGVVGRIADETLVMYAGTRMEAGPTGDVL EEEEEEHHHHHHHHHHHHHHHCEEEEEEECCCCCEEHHCCCEEEEEECCCCCCCCCCHHH RHPRHPYTQGLLAAMPRRGGGRSGDLPTIPGTVPSLAALPPGCRFANRCARADDGCRAAE CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHCCCCCCCCCC PVWAGEPDAGIRCIHAGKVAA CCCCCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]