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The map label for this gene is ygbK [C]

Identifier: 158424310

GI number: 158424310

Start: 3044362

End: 3045648

Strand: Reverse

Name: ygbK [C]

Synonym: AZC_2686

Alternate gene names: 158424310

Gene position: 3045648-3044362 (Counterclockwise)

Preceding gene: 158424311

Following gene: 158424306

Centisome position: 56.72

GC content: 70.94

Gene sequence:

>1287_bases
ATGGCGCCGCGCTACGGCTGGTATGGCGACGATTTCACGGGGGCCAGTGATACGCTCGCCGTGCTGGCCCAGCGCGGGCA
GAAGACGCTGCTGTTTCGCGGCCTTCCAACAGCCGCCCAGCTTGAGCGGGCGGGGCCTCTCGATGCGGTGGGCATCGCCG
GGGCCTCGCGCGCCATGGCCCCCGCCGAGATGACAACGGAACTGGCGCCCGTGGCGGCCTTCTTCGCGGCTCTGGGCGTG
CGGGTGCTGCATTACAAATGCTGCTCCACCTTCGACAGCGCGCCGCAGGTGGGCAGCATCGGCCATGCGGTCTCCGTGCT
GGCGCCGGCCTTTCCCAATGTCTTCCGGCCGATTGTCGGCGGCCAGCCGAACATCGGGCGCTATTGCGTCTTCTCCAACC
TGTTCGCGGCAGCAGGCACGGGCGGCGAGGTTTTCCGGATCGACCGCCACCCCACCATGCGCGTGCATCCGGTGACGCCC
ATGACCGAGGGCGATCTGCGCCGACATCTGGGGGCGCAAGGGCTGACGGTGGTCGGCCTGCACCATCCGGCCTATGGCGA
AGATGAAGACTCCCTCGATGCGCGCCTCGCGGCGCTTCTCGACGAAACGCCCGATGCCGTGTTGTGCGACATTTCCGGTC
TAGAAGACCTCGCCCCGGTGGGGCGGCTGATCTGGCAGGCAGCCGAGCACCAGCCGCTTCTGGCGGTGGGCGCCAGTTCC
GTCGCGCAGGCGGTTTGCGCCCATTGGGGCGCCGACCCGATGCCATCCGCCCCGCTGCGGCCGGCCGAGGGGCCGGTGTT
CGTTCTGGCGGGCAGCCTGTCGCCCGTCACGCGCCGGCAGCGCGAGTTGGCGGCTTCATATCGCAAGGTTCAGCTCGACG
CGGCGCGGCTCGCCGACGATCCGGGCTATGTGGCCGCGCAGGCCCAGGCCATCGGTGCGCATCTGCGCGCCGGCGTCTCG
GTACTTGGGACCACGGCGCCGGAGGGCGAGGCGTTGGAAGCGAACCCGCCGCCCGCGCAGGTGGCGGCTGCGACGGCGGC
GTTTCTCAACGCCGTGCTGGCGCAGGCGCCGGTGAAGCGGCTCGGCATCGCGGGGGGCGACACGTCCAGCCGAGCGGTGC
AGGCGCTGGACCTCTGGGGCCTCAGCTATCTCTCCGCGCCCGCGCCCGGCGTCGCCTTCTGCCGCGTGCACAGCGACGTC
CCGGCTCTGGACGACCTCGAACTGATGCTGAAGGGCGGCCAGATGGGCACGCCAGACCTGTTCGAGCGCCTGCTCCACGG
CGGCTGA

Upstream 100 bases:

>100_bases
GGGAAGCTGTCATGGCCGGGGAGGGGTTGCCCGAGGCGGCGCAGCGCGCTCCCGCGCTCGCCAAGGCGCTCGCCTTCTTC
GGCTCTGGAGCCTGAAGCCG

Downstream 100 bases:

>100_bases
GAGGGCTCAGGCCGCCACCGGCACCTCCACGCCTGCCGCCCTGAGCGCCGCCGAGAGGGCTGCGTTCTCCCGCGCGTCGC
AGGACGGCTGGGGCGGACGC

Product: type III effector Hrp-dependent outer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MAPRYGWYGDDFTGASDTLAVLAQRGQKTLLFRGLPTAAQLERAGPLDAVGIAGASRAMAPAEMTTELAPVAAFFAALGV
RVLHYKCCSTFDSAPQVGSIGHAVSVLAPAFPNVFRPIVGGQPNIGRYCVFSNLFAAAGTGGEVFRIDRHPTMRVHPVTP
MTEGDLRRHLGAQGLTVVGLHHPAYGEDEDSLDARLAALLDETPDAVLCDISGLEDLAPVGRLIWQAAEHQPLLAVGASS
VAQAVCAHWGADPMPSAPLRPAEGPVFVLAGSLSPVTRRQRELAASYRKVQLDAARLADDPGYVAAQAQAIGAHLRAGVS
VLGTTAPEGEALEANPPPAQVAAATAAFLNAVLAQAPVKRLGIAGGDTSSRAVQALDLWGLSYLSAPAPGVAFCRVHSDV
PALDDLELMLKGGQMGTPDLFERLLHGG

Sequences:

>Translated_428_residues
MAPRYGWYGDDFTGASDTLAVLAQRGQKTLLFRGLPTAAQLERAGPLDAVGIAGASRAMAPAEMTTELAPVAAFFAALGV
RVLHYKCCSTFDSAPQVGSIGHAVSVLAPAFPNVFRPIVGGQPNIGRYCVFSNLFAAAGTGGEVFRIDRHPTMRVHPVTP
MTEGDLRRHLGAQGLTVVGLHHPAYGEDEDSLDARLAALLDETPDAVLCDISGLEDLAPVGRLIWQAAEHQPLLAVGASS
VAQAVCAHWGADPMPSAPLRPAEGPVFVLAGSLSPVTRRQRELAASYRKVQLDAARLADDPGYVAAQAQAIGAHLRAGVS
VLGTTAPEGEALEANPPPAQVAAATAAFLNAVLAQAPVKRLGIAGGDTSSRAVQALDLWGLSYLSAPAPGVAFCRVHSDV
PALDDLELMLKGGQMGTPDLFERLLHGG
>Mature_427_residues
APRYGWYGDDFTGASDTLAVLAQRGQKTLLFRGLPTAAQLERAGPLDAVGIAGASRAMAPAEMTTELAPVAAFFAALGVR
VLHYKCCSTFDSAPQVGSIGHAVSVLAPAFPNVFRPIVGGQPNIGRYCVFSNLFAAAGTGGEVFRIDRHPTMRVHPVTPM
TEGDLRRHLGAQGLTVVGLHHPAYGEDEDSLDARLAALLDETPDAVLCDISGLEDLAPVGRLIWQAAEHQPLLAVGASSV
AQAVCAHWGADPMPSAPLRPAEGPVFVLAGSLSPVTRRQRELAASYRKVQLDAARLADDPGYVAAQAQAIGAHLRAGVSV
LGTTAPEGEALEANPPPAQVAAATAAFLNAVLAQAPVKRLGIAGGDTSSRAVQALDLWGLSYLSAPAPGVAFCRVHSDVP
ALDDLELMLKGGQMGTPDLFERLLHGG

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=402, Percent_Identity=28.6069651741293, Blast_Score=90, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 44480; Mature: 44349

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPRYGWYGDDFTGASDTLAVLAQRGQKTLLFRGLPTAAQLERAGPLDAVGIAGASRAMA
CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCHHCCCCCHHCCC
PAEMTTELAPVAAFFAALGVRVLHYKCCSTFDSAPQVGSIGHAVSVLAPAFPNVFRPIVG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
GQPNIGRYCVFSNLFAAAGTGGEVFRIDRHPTMRVHPVTPMTEGDLRRHLGAQGLTVVGL
CCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCEEEEE
HHPAYGEDEDSLDARLAALLDETPDAVLCDISGLEDLAPVGRLIWQAAEHQPLLAVGASS
ECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECHHH
VAQAVCAHWGADPMPSAPLRPAEGPVFVLAGSLSPVTRRQRELAASYRKVQLDAARLADD
HHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PGYVAAQAQAIGAHLRAGVSVLGTTAPEGEALEANPPPAQVAAATAAFLNAVLAQAPVKR
CCCEEHHHHHHHHHHHHCHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
LGIAGGDTSSRAVQALDLWGLSYLSAPAPGVAFCRVHSDVPALDDLELMLKGGQMGTPDL
HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCHHH
FERLLHGG
HHHHHCCC
>Mature Secondary Structure 
APRYGWYGDDFTGASDTLAVLAQRGQKTLLFRGLPTAAQLERAGPLDAVGIAGASRAMA
CCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCHHCCCCCHHCCC
PAEMTTELAPVAAFFAALGVRVLHYKCCSTFDSAPQVGSIGHAVSVLAPAFPNVFRPIVG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
GQPNIGRYCVFSNLFAAAGTGGEVFRIDRHPTMRVHPVTPMTEGDLRRHLGAQGLTVVGL
CCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCEEEEE
HHPAYGEDEDSLDARLAALLDETPDAVLCDISGLEDLAPVGRLIWQAAEHQPLLAVGASS
ECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECHHH
VAQAVCAHWGADPMPSAPLRPAEGPVFVLAGSLSPVTRRQRELAASYRKVQLDAARLADD
HHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PGYVAAQAQAIGAHLRAGVSVLGTTAPEGEALEANPPPAQVAAATAAFLNAVLAQAPVKR
CCCEEHHHHHHHHHHHHCHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
LGIAGGDTSSRAVQALDLWGLSYLSAPAPGVAFCRVHSDVPALDDLELMLKGGQMGTPDL
HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCHHH
FERLLHGG
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]