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The map label for this gene is dppB [C]

Identifier: 158424275

GI number: 158424275

Start: 3003745

End: 3004749

Strand: Direct

Name: dppB [C]

Synonym: AZC_2651

Alternate gene names: 158424275

Gene position: 3003745-3004749 (Clockwise)

Preceding gene: 158424274

Following gene: 158424276

Centisome position: 55.94

GC content: 64.28

Gene sequence:

>1005_bases
ATGGCCACAGCCACCCGCGCACAACCGAACGGACTGGCGCGCTTCTTCGCCCGCCGCCTGCTGCAGGCCGTGCCCGTTCT
CTTGGGCATCGTCATCTTCAGCTTCGTCATCCTGCATCTCGCCCCTGGAGATGCCGTCGACGTCATGGCCGGCGAAGCCG
GAACGGGCGATGCCGCGTACATGGCCGAACTCCGTGCCAAATACGGGCTCGACCAGCCTCTCCCGGTCCAGTTGCTGCGT
TATGGCACGCAGATCCTGCAACTGGATCTCGGATATTCGATCCGTAACAACAGCCCGGTGCGCGATCTCATCCTCCAGCG
CCTCGGGCCCACCCTGCTCCTGATGAGCGTCAGCATCGTCGCTTCGGTGGCCATGGGCGTATTGTTCGGCGCCATCGCCG
CGATCCGCCGCAACACCCTCCTTGATGATCTGATCTCGCTCGTCGCCTTGCTCGCCTACGCTATGCCCATCTTCTGGATC
GGGCTCATGCTCATCATCCTCTTCTCCGTCACGTTGGGTGTGCTGCCCTCGGGCGGCTTCATGGATGTGGCGCGACAGGA
CGTGGGGCCCCTCGCCCGCGCGGTCGACATCGGCCGACACCTCGTGCTGCCCGCCCTCACGCTCTCGCTCTTCTACTTCG
CCATCTACACGCGCCTCATGCGCGCCTCGATGCTGGAGGTGATGGGGCTCGACTACATCCGCACGGCACGCGCCAAGGGC
CTTGGCGCCGCCAAGGTGACGATCCGCCACGTGGTGCGCAACGCGCTGCTGCCCATCGTCACCATGTTGGGGATGCAGAT
GGCCTCCCTGCTGGGCGGCGCGGTGGTGGTGGAGACAGTATTCAACTGGCCGGGCATCGGCCGCCTCACCTATGACGCCG
TGTTCCAGCGCGACTATGCGCTGCTCATCGGCATCCTGCTTATGAGCTCGGCTCTGGTGATCTTCATCAACATGCTGGTG
GATCTCGCCTATTCCTGGCTGGACCCGAGGATCAAGGCGCGATGA

Upstream 100 bases:

>100_bases
GCCGGGGCCATACCCCTGCCGCACGGCCGCAGGAAGCGCCCGGGATGCCTCCGCCGGAGGATTTCGGATCGCAGCGAGCA
ACCGGAGCGGAGCCAACGGC

Downstream 100 bases:

>100_bases
ACCGGCTTCTCGATTTCTGGCGCCTGTTCCGCCGCAAGCGCACGGCCGTGCTCGGCCTCGTCATCTTCCTCGGCATCGTC
GCCGCCGCGCTGCTTGCGCC

Product: ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MATATRAQPNGLARFFARRLLQAVPVLLGIVIFSFVILHLAPGDAVDVMAGEAGTGDAAYMAELRAKYGLDQPLPVQLLR
YGTQILQLDLGYSIRNNSPVRDLILQRLGPTLLLMSVSIVASVAMGVLFGAIAAIRRNTLLDDLISLVALLAYAMPIFWI
GLMLIILFSVTLGVLPSGGFMDVARQDVGPLARAVDIGRHLVLPALTLSLFYFAIYTRLMRASMLEVMGLDYIRTARAKG
LGAAKVTIRHVVRNALLPIVTMLGMQMASLLGGAVVVETVFNWPGIGRLTYDAVFQRDYALLIGILLMSSALVIFINMLV
DLAYSWLDPRIKAR

Sequences:

>Translated_334_residues
MATATRAQPNGLARFFARRLLQAVPVLLGIVIFSFVILHLAPGDAVDVMAGEAGTGDAAYMAELRAKYGLDQPLPVQLLR
YGTQILQLDLGYSIRNNSPVRDLILQRLGPTLLLMSVSIVASVAMGVLFGAIAAIRRNTLLDDLISLVALLAYAMPIFWI
GLMLIILFSVTLGVLPSGGFMDVARQDVGPLARAVDIGRHLVLPALTLSLFYFAIYTRLMRASMLEVMGLDYIRTARAKG
LGAAKVTIRHVVRNALLPIVTMLGMQMASLLGGAVVVETVFNWPGIGRLTYDAVFQRDYALLIGILLMSSALVIFINMLV
DLAYSWLDPRIKAR
>Mature_333_residues
ATATRAQPNGLARFFARRLLQAVPVLLGIVIFSFVILHLAPGDAVDVMAGEAGTGDAAYMAELRAKYGLDQPLPVQLLRY
GTQILQLDLGYSIRNNSPVRDLILQRLGPTLLLMSVSIVASVAMGVLFGAIAAIRRNTLLDDLISLVALLAYAMPIFWIG
LMLIILFSVTLGVLPSGGFMDVARQDVGPLARAVDIGRHLVLPALTLSLFYFAIYTRLMRASMLEVMGLDYIRTARAKGL
GAAKVTIRHVVRNALLPIVTMLGMQMASLLGGAVVVETVFNWPGIGRLTYDAVFQRDYALLIGILLMSSALVIFINMLVD
LAYSWLDPRIKAR

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=39.7626112759644, Blast_Score=244, Evalue=5e-66,
Organism=Escherichia coli, GI1787053, Length=317, Percent_Identity=39.7476340694006, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI1789888, Length=320, Percent_Identity=35.3125, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=36.5853658536585, Blast_Score=181, Evalue=8e-47,
Organism=Escherichia coli, GI1787497, Length=320, Percent_Identity=33.4375, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1787550, Length=255, Percent_Identity=32.5490196078431, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1788504, Length=354, Percent_Identity=25.9887005649718, Blast_Score=125, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36312; Mature: 36181

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATATRAQPNGLARFFARRLLQAVPVLLGIVIFSFVILHLAPGDAVDVMAGEAGTGDAAY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHH
MAELRAKYGLDQPLPVQLLRYGTQILQLDLGYSIRNNSPVRDLILQRLGPTLLLMSVSIV
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHH
ASVAMGVLFGAIAAIRRNTLLDDLISLVALLAYAMPIFWIGLMLIILFSVTLGVLPSGGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
MDVARQDVGPLARAVDIGRHLVLPALTLSLFYFAIYTRLMRASMLEVMGLDYIRTARAKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LGAAKVTIRHVVRNALLPIVTMLGMQMASLLGGAVVVETVFNWPGIGRLTYDAVFQRDYA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LLIGILLMSSALVIFINMLVDLAYSWLDPRIKAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ATATRAQPNGLARFFARRLLQAVPVLLGIVIFSFVILHLAPGDAVDVMAGEAGTGDAAY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHH
MAELRAKYGLDQPLPVQLLRYGTQILQLDLGYSIRNNSPVRDLILQRLGPTLLLMSVSIV
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHH
ASVAMGVLFGAIAAIRRNTLLDDLISLVALLAYAMPIFWIGLMLIILFSVTLGVLPSGGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
MDVARQDVGPLARAVDIGRHLVLPALTLSLFYFAIYTRLMRASMLEVMGLDYIRTARAKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LGAAKVTIRHVVRNALLPIVTMLGMQMASLLGGAVVVETVFNWPGIGRLTYDAVFQRDYA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LLIGILLMSSALVIFINMLVDLAYSWLDPRIKAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA