Click here to switch to the map view.

The map label for this gene is gntR [H]

Identifier: 158424246

GI number: 158424246

Start: 2954996

End: 2955769

Strand: Reverse

Name: gntR [H]

Synonym: AZC_2622

Alternate gene names: 158424246

Gene position: 2955769-2954996 (Counterclockwise)

Preceding gene: 158424260

Following gene: 158424244

Centisome position: 55.04

GC content: 64.99

Gene sequence:

>774_bases
GTGTACAAAATGGGCAGGGGCAGCGCGCGTCTCTGGCGGGCTGCAGGAGAGAGAAGAGCAGGCATGGCGACGCGATCGGA
GGTTGTGACGCGGAAGCTCCGGGAGACCATCTTGGACGGCGCCTACGAACCTGGGGCCCGCTTGAATGAGGTGGCTTTGG
CCGAACGCATGTCCGTGTCCCGCACGCCGGTCCGCGCCGCCCTCAGCCTGTTGTTCGCAGAAGGGCTATTGGATTACGAG
CCAAACTGCGGCTACGTGGTTCGCCGCATCTCACCGGACGACGCGCTGCACATCTATACGGTCAGGGCCAATCTGGAGGG
TTTGGCGGCGCGTCTTGCCGCAGAGATTGGCATCACGGGGGAGCCCCGGGAGCGGTTTCAGTCCATTCTCGCGGAGATGG
AGAGCCTGATCTCCGGCAAGGCCTGGGGCGAGGTGCAGCAGCGGCGTTGGGGGGAGCTGAACATCACCTTCCATGGCGCC
ATCTGCCTCGCCGCCGGCAACGATTACCTGACCTCGTCCATCCAGCGCACCCGTACACTCCCGGTGCTGACGGAGCGGGG
CCTTAAGACATTTTCTGCCGAACGCGCCGTCGTCTGGTGGGATCGTGCCGCTTATCGGCGCTCGCAGGATGACCATCTCG
ATATCGGGGAGGCAATTCTAGCGGGGCAGGGGACGAGGGCCGAAGCGGTCATGCGTGAGCATATCGAGCGCGCTGGCCGC
CTGATCCGCCAGAAATTGGCCATTCGTGCGGAGGCGCGGCGGGCGCTGCCGTGA

Upstream 100 bases:

>100_bases
AAGCCATTTTAACAATCCCACGCTCCAAGTGGCATGAAACTGGTCTTTTCGACGCCAGTGCGCGAGAGCTCTCGAGCATC
TGGCTCTGATTTCCGGAATT

Downstream 100 bases:

>100_bases
CACACGGACGCCATCAGGTCCGAAGAGCCATGATCGGAGCCTGTGAACGGTAGTGGACTGGCTATGCCGCCGGGGTTCCG
CGATGAGATCGGAGGCTTAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MYKMGRGSARLWRAAGERRAGMATRSEVVTRKLRETILDGAYEPGARLNEVALAERMSVSRTPVRAALSLLFAEGLLDYE
PNCGYVVRRISPDDALHIYTVRANLEGLAARLAAEIGITGEPRERFQSILAEMESLISGKAWGEVQQRRWGELNITFHGA
ICLAAGNDYLTSSIQRTRTLPVLTERGLKTFSAERAVVWWDRAAYRRSQDDHLDIGEAILAGQGTRAEAVMREHIERAGR
LIRQKLAIRAEARRALP

Sequences:

>Translated_257_residues
MYKMGRGSARLWRAAGERRAGMATRSEVVTRKLRETILDGAYEPGARLNEVALAERMSVSRTPVRAALSLLFAEGLLDYE
PNCGYVVRRISPDDALHIYTVRANLEGLAARLAAEIGITGEPRERFQSILAEMESLISGKAWGEVQQRRWGELNITFHGA
ICLAAGNDYLTSSIQRTRTLPVLTERGLKTFSAERAVVWWDRAAYRRSQDDHLDIGEAILAGQGTRAEAVMREHIERAGR
LIRQKLAIRAEARRALP
>Mature_257_residues
MYKMGRGSARLWRAAGERRAGMATRSEVVTRKLRETILDGAYEPGARLNEVALAERMSVSRTPVRAALSLLFAEGLLDYE
PNCGYVVRRISPDDALHIYTVRANLEGLAARLAAEIGITGEPRERFQSILAEMESLISGKAWGEVQQRRWGELNITFHGA
ICLAAGNDYLTSSIQRTRTLPVLTERGLKTFSAERAVVWWDRAAYRRSQDDHLDIGEAILAGQGTRAEAVMREHIERAGR
LIRQKLAIRAEARRALP

Specific function: Probable regulator for the expression of the NTA monooxygenase subunits [H]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994961, Length=181, Percent_Identity=30.939226519337, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082149, Length=222, Percent_Identity=27.4774774774775, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28727; Mature: 28727

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKMGRGSARLWRAAGERRAGMATRSEVVTRKLRETILDGAYEPGARLNEVALAERMSVS
CCCCCCCHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
RTPVRAALSLLFAEGLLDYEPNCGYVVRRISPDDALHIYTVRANLEGLAARLAAEIGITG
CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCCCC
EPRERFQSILAEMESLISGKAWGEVQQRRWGELNITFHGAICLAAGNDYLTSSIQRTRTL
CHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEEEEEEEEECCHHHHHHHHHHHCC
PVLTERGLKTFSAERAVVWWDRAAYRRSQDDHLDIGEAILAGQGTRAEAVMREHIERAGR
HHHHHHCCHHHCCCCEEEEECHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
LIRQKLAIRAEARRALP
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYKMGRGSARLWRAAGERRAGMATRSEVVTRKLRETILDGAYEPGARLNEVALAERMSVS
CCCCCCCHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
RTPVRAALSLLFAEGLLDYEPNCGYVVRRISPDDALHIYTVRANLEGLAARLAAEIGITG
CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCCCC
EPRERFQSILAEMESLISGKAWGEVQQRRWGELNITFHGAICLAAGNDYLTSSIQRTRTL
CHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEEEEEEEEECCHHHHHHHHHHHCC
PVLTERGLKTFSAERAVVWWDRAAYRRSQDDHLDIGEAILAGQGTRAEAVMREHIERAGR
HHHHHHCCHHHCCCCEEEEECHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
LIRQKLAIRAEARRALP
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA