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The map label for this gene is yckA [H]

Identifier: 158424111

GI number: 158424111

Start: 2823435

End: 2824100

Strand: Direct

Name: yckA [H]

Synonym: AZC_2487

Alternate gene names: 158424111

Gene position: 2823435-2824100 (Clockwise)

Preceding gene: 158424110

Following gene: 158424112

Centisome position: 52.58

GC content: 67.72

Gene sequence:

>666_bases
ATGGACGCGATCCTCCTCCAGTTCTTCAATCTGGACATCATGCGGCAGGCTGCCCCCCTGGTACTCCAGGGCCTCGGCAT
GACGCTGATGGTGTGCTGCGCGGTGATCCCGCTCGGGCTCGTCGGCGGCCTTATCGTGGCGCTCGGCAGCCGGGCGCGCT
CGCGCCTCGCGAGAGGCCTGCTGGCCGGGTTCATCGACGTGCTGCGCGCCCTGCCGCCGCTGGTGCTGCTGATCGCCATC
TCGGCCGGGCTGCCCTTCGCGGGCATCCGCCTCTCGCCCTTCGCCTGCGTGACACTGGCGCTGTTCCTCAACACCTCGGC
CTATTATGGCGAGGTGTATCGCGCCGGCCTCGACAGCGTGTCTCACGGACAGTGGGAAGCGGCGCGCTGCACCGGCCTCA
GCGCCTCGCAGGCCATGTTCTACGTCATCATCCCGCAGGCGGTGCGCAACGTACTGCCGGACCTCGTGTCCAACACGGTG
GAGGTGGTGAAGCTCACCTCGCTCGCCAGCGTCGTGGCCCTGCCGGAGATGCTCTATTCGGCGGACATGGCCCGCTCGCT
GACCTTCAATTCCTCTCCCATCATGCTGGCCGCCCTCATCTACCTCGCCCTGCTGTGGCCCGTGGTGCGCCTCATGAGCC
GGCTGGAACACCGGCTCGGAACCTGA

Upstream 100 bases:

>100_bases
CGCCGCTGATGATGGGCGCGGTCGCCTATCTCATCCTCTTCGTGCCGGTGGTCATCGCCGGGCGTTATATCGAGACGCGC
TTCGCGTGGAGGCGGGCCTG

Downstream 100 bases:

>100_bases
TCCCCTCTCAAGCGAAACGGCCCGGCGCGGCGGAGCGCAGGCCCCCAGGAGTCTAGGAAGATGCGTGAAATCAAGGTCGC
GGCGGCCCAGTTGGGCGCCA

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MDAILLQFFNLDIMRQAAPLVLQGLGMTLMVCCAVIPLGLVGGLIVALGSRARSRLARGLLAGFIDVLRALPPLVLLIAI
SAGLPFAGIRLSPFACVTLALFLNTSAYYGEVYRAGLDSVSHGQWEAARCTGLSASQAMFYVIIPQAVRNVLPDLVSNTV
EVVKLTSLASVVALPEMLYSADMARSLTFNSSPIMLAALIYLALLWPVVRLMSRLEHRLGT

Sequences:

>Translated_221_residues
MDAILLQFFNLDIMRQAAPLVLQGLGMTLMVCCAVIPLGLVGGLIVALGSRARSRLARGLLAGFIDVLRALPPLVLLIAI
SAGLPFAGIRLSPFACVTLALFLNTSAYYGEVYRAGLDSVSHGQWEAARCTGLSASQAMFYVIIPQAVRNVLPDLVSNTV
EVVKLTSLASVVALPEMLYSADMARSLTFNSSPIMLAALIYLALLWPVVRLMSRLEHRLGT
>Mature_221_residues
MDAILLQFFNLDIMRQAAPLVLQGLGMTLMVCCAVIPLGLVGGLIVALGSRARSRLARGLLAGFIDVLRALPPLVLLIAI
SAGLPFAGIRLSPFACVTLALFLNTSAYYGEVYRAGLDSVSHGQWEAARCTGLSASQAMFYVIIPQAVRNVLPDLVSNTV
EVVKLTSLASVVALPEMLYSADMARSLTFNSSPIMLAALIYLALLWPVVRLMSRLEHRLGT

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=203, Percent_Identity=35.9605911330049, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1787030, Length=219, Percent_Identity=31.0502283105023, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI87082239, Length=205, Percent_Identity=31.219512195122, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI48994930, Length=98, Percent_Identity=41.8367346938776, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788645, Length=208, Percent_Identity=27.4038461538462, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786873, Length=213, Percent_Identity=28.169014084507, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788646, Length=182, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787087, Length=219, Percent_Identity=27.3972602739726, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787086, Length=214, Percent_Identity=25.7009345794392, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23688; Mature: 23688

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAILLQFFNLDIMRQAAPLVLQGLGMTLMVCCAVIPLGLVGGLIVALGSRARSRLARGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGFIDVLRALPPLVLLIAISAGLPFAGIRLSPFACVTLALFLNTSAYYGEVYRAGLDSV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCC
SHGQWEAARCTGLSASQAMFYVIIPQAVRNVLPDLVSNTVEVVKLTSLASVVALPEMLYS
CCCCCHHHHHCCCCHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADMARSLTFNSSPIMLAALIYLALLWPVVRLMSRLEHRLGT
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDAILLQFFNLDIMRQAAPLVLQGLGMTLMVCCAVIPLGLVGGLIVALGSRARSRLARGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGFIDVLRALPPLVLLIAISAGLPFAGIRLSPFACVTLALFLNTSAYYGEVYRAGLDSV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCC
SHGQWEAARCTGLSASQAMFYVIIPQAVRNVLPDLVSNTVEVVKLTSLASVVALPEMLYS
CCCCCHHHHHCCCCHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADMARSLTFNSSPIMLAALIYLALLWPVVRLMSRLEHRLGT
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]