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The map label for this gene is yliC [C]

Identifier: 158423703

GI number: 158423703

Start: 2393031

End: 2393972

Strand: Reverse

Name: yliC [C]

Synonym: AZC_2079

Alternate gene names: 158423703

Gene position: 2393972-2393031 (Counterclockwise)

Preceding gene: 158423704

Following gene: 158423702

Centisome position: 44.58

GC content: 65.29

Gene sequence:

>942_bases
ATGCTCGCTTATGTTCTCCGGCGCGTGCTCGCCGCCATCCCCGTCATGGGCGTGGTCGCGCTGTTCGTCTTCCTGCTGCT
GCGCCTCACGCCCGGCGACCCCGCCGCCATCATCGCCGGCGACACGGCGACACCGGCACAGCTGGAGGCCATCCGCACCA
GCCTCGGGCTCGACAAGCCCATACCCGTCCAGTTCCTCACCTGGATCAGCCAGCTCGCGCATGGCGATCTCGGCACCTCG
CTCATCTCCAAGACGCCCGTGACGACGCTGATCGGCCAGCGCCTCGGGCCGACGCTCAACCTCGCGCTCGTCACCATGGT
GCTTTCGATCCTCATCGCCGTGCCCATGGGCGTGCTGGCGGCCTGGAAGCACGGCACGCTCATCGACAATCTCGTGATGG
CGCTGTGCGTGCTCGGCTTCTCCGTGCCGGTCTTCGTCATCGGCTATGTGCTGATCCAGGTGTTCGCCATCAATCTGCGC
TGGTTCCCTGTTCAGGGCTTCAGCACGATCGCCAACGGCATCGGCCCCTTCGCCCAGCGCGCCACCCTCCCCGCCTTCAC
CCTCGCTTCCATCTATGTGGCGCTGATCGCCCGCATGACGCGTGCGAGCCTGCTGGACGTGCTGGGGGAAGACTACATCC
GCACCGCCCGCGCCAAGGGCGTCGCCGAGCGCATCGTCCTGTTCCGCCACGCTTTGCGCAACAGCGCCGTGCCCATCCTC
ACGGTCATCGGCACCGGCTTTGCCCTGCTCATCTCGGGCGTGGTGGTGACCGAAAGCGTGTTCAACATTCCCGGCCTCGG
ACGGCTCATTGTCGATGCGGTTCTGGCCCGCGACTATCCGGTCATACAGGGGCTGATCCTTCTCACCTCCGGCATCTATG
TGTTCATCAACCTGATGGTCGATCTCTCCTATTCCCTGCTGGACCCGAGGATCCGCTACTGA

Upstream 100 bases:

>100_bases
ACCGGCGCCGCTGTTCTGGAACATCAAGAAAGCCAACTGACGCCGCTGCGCCCGGCCCGCACCGGCCGGGCGCAGCCCCG
TTTCCCAGCGAGGGCGATCC

Downstream 100 bases:

>100_bases
TGGCCGCCTCCTCTCCCAGTGATGCGGGCGCCCTGCCCGTCAGCCGGCCGCGCTATCTGCCGAACCTGTCGCGGCTGCGC
TTCGCGCCGACGGTCGCCGC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLAYVLRRVLAAIPVMGVVALFVFLLLRLTPGDPAAIIAGDTATPAQLEAIRTSLGLDKPIPVQFLTWISQLAHGDLGTS
LISKTPVTTLIGQRLGPTLNLALVTMVLSILIAVPMGVLAAWKHGTLIDNLVMALCVLGFSVPVFVIGYVLIQVFAINLR
WFPVQGFSTIANGIGPFAQRATLPAFTLASIYVALIARMTRASLLDVLGEDYIRTARAKGVAERIVLFRHALRNSAVPIL
TVIGTGFALLISGVVVTESVFNIPGLGRLIVDAVLARDYPVIQGLILLTSGIYVFINLMVDLSYSLLDPRIRY

Sequences:

>Translated_313_residues
MLAYVLRRVLAAIPVMGVVALFVFLLLRLTPGDPAAIIAGDTATPAQLEAIRTSLGLDKPIPVQFLTWISQLAHGDLGTS
LISKTPVTTLIGQRLGPTLNLALVTMVLSILIAVPMGVLAAWKHGTLIDNLVMALCVLGFSVPVFVIGYVLIQVFAINLR
WFPVQGFSTIANGIGPFAQRATLPAFTLASIYVALIARMTRASLLDVLGEDYIRTARAKGVAERIVLFRHALRNSAVPIL
TVIGTGFALLISGVVVTESVFNIPGLGRLIVDAVLARDYPVIQGLILLTSGIYVFINLMVDLSYSLLDPRIRY
>Mature_313_residues
MLAYVLRRVLAAIPVMGVVALFVFLLLRLTPGDPAAIIAGDTATPAQLEAIRTSLGLDKPIPVQFLTWISQLAHGDLGTS
LISKTPVTTLIGQRLGPTLNLALVTMVLSILIAVPMGVLAAWKHGTLIDNLVMALCVLGFSVPVFVIGYVLIQVFAINLR
WFPVQGFSTIANGIGPFAQRATLPAFTLASIYVALIARMTRASLLDVLGEDYIRTARAKGVAERIVLFRHALRNSAVPIL
TVIGTGFALLISGVVVTESVFNIPGLGRLIVDAVLARDYPVIQGLILLTSGIYVFINLMVDLSYSLLDPRIRY

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=45.0479233226837, Blast_Score=272, Evalue=2e-74,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=39.7626112759644, Blast_Score=238, Evalue=3e-64,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=39.3650793650794, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=36.1904761904762, Blast_Score=207, Evalue=9e-55,
Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=37.7300613496933, Blast_Score=171, Evalue=8e-44,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=27.4238227146814, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=25.6603773584906, Blast_Score=122, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33624; Mature: 33624

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAYVLRRVLAAIPVMGVVALFVFLLLRLTPGDPAAIIAGDTATPAQLEAIRTSLGLDKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC
IPVQFLTWISQLAHGDLGTSLISKTPVTTLIGQRLGPTLNLALVTMVLSILIAVPMGVLA
CCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AWKHGTLIDNLVMALCVLGFSVPVFVIGYVLIQVFAINLRWFPVQGFSTIANGIGPFAQR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHCHHHHH
ATLPAFTLASIYVALIARMTRASLLDVLGEDYIRTARAKGVAERIVLFRHALRNSAVPIL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
TVIGTGFALLISGVVVTESVFNIPGLGRLIVDAVLARDYPVIQGLILLTSGIYVFINLMV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DLSYSLLDPRIRY
HHHHHHCCCCCCC
>Mature Secondary Structure
MLAYVLRRVLAAIPVMGVVALFVFLLLRLTPGDPAAIIAGDTATPAQLEAIRTSLGLDKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC
IPVQFLTWISQLAHGDLGTSLISKTPVTTLIGQRLGPTLNLALVTMVLSILIAVPMGVLA
CCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AWKHGTLIDNLVMALCVLGFSVPVFVIGYVLIQVFAINLRWFPVQGFSTIANGIGPFAQR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHCHHHHH
ATLPAFTLASIYVALIARMTRASLLDVLGEDYIRTARAKGVAERIVLFRHALRNSAVPIL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
TVIGTGFALLISGVVVTESVFNIPGLGRLIVDAVLARDYPVIQGLILLTSGIYVFINLMV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DLSYSLLDPRIRY
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]