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The map label for this gene is yliC [C]

Identifier: 158423652

GI number: 158423652

Start: 2339040

End: 2339993

Strand: Reverse

Name: yliC [C]

Synonym: AZC_2028

Alternate gene names: 158423652

Gene position: 2339993-2339040 (Counterclockwise)

Preceding gene: 158423653

Following gene: 158423651

Centisome position: 43.58

GC content: 64.99

Gene sequence:

>954_bases
ATGAACAGCTATGTCCTGTCCCTTCTGGGCGGCCGCCTGCTGATCGCCGCGGTCACGCTCCTTATCGTGGCCTTCACGGT
GTTCGCGGCCACGGAGGTTCTGCCCGGCGACGTGGCGGAGGTGCTGCTCGGGCAGTCGGCGACGCCGGAAGCCGTAGCGG
GCCTGCGCGCGGCCATGCATCTCAATGACCCGGCGATCCTGCGCTTTCTCCACTGGCTCGCTGGCCTGCTGACGGGCGAT
CTTGGCCGATCCTACGCCAACAACATGCCCGTAAAGGACCTGATCGGCACGCGCCTGCTCAGCTCCCTGAAACTCGCCGG
CGCCACCACGCTGTTCTCCGTGCCGGTGGCGCTCACACTCGGCATCCTCTCGGCCATGTGGCGCGGCTCGCTGTTCGACC
GCACGGTGACGGTCCTCACCATCGCCGTCATTTCCGTCCCGGAGTTCATGGTGGCGACATCCGCCGTCCTCATCTTCGCC
GTCTATCTGAAATGGCTGCCGGCCCTGTCCTTCACCAGCGACAGCCTGACGTTTCTCCAGCTGCTCCGGGCCCTCGCCAT
GCCCATCATCACCCTGAGCTGCGTGATCTCCGCGCAGATGATCCGCATGACGCGCGCGGCGGTGATCGAGACACTGAACA
CGCCCTATGTGGAGATGGCGCTGCTGAAGGGCGCCTCTCGCCCCCGCATGGTGCTGCGCCACGCCTTGCCCAACGCCATC
GGGCCCATCGCCAATGCCGTGGCCCTCTCCCTCTCCTACCTGCTGGGCGGTGTCATCATCGTGGAGACCATCTTCAACTA
TCCGGGCATCGCGAAGCTGATGGTGGACGCTGTCTCCACTCGCGACCTGCCTCTGATCCAGAGCTGTGCGATGATCTTCT
GCGTGGTCTATCTCGCCCTGATCACCCTCGCAGACATGATCGCCATCCTGTCCAACCCGAGGCTGCGCCGATGA

Upstream 100 bases:

>100_bases
CCGAGTACGTCTGGCTCGCATCCTGACCGCAAAGCCGGCAGGCCGCTTCAGGCCTCGCCGGGGCCGCCCGGTGATCCGTC
ATCCTCGCGCGGGAGCGCCA

Downstream 100 bases:

>100_bases
GCACGCGCCTCCTCACCCTGCCCCGCGTGGGCTACCAGATCAGCCCCGTCGGCATCGGCGCATTCCTTGTGATCCTGTTC
TGGCTGGTTGTGGCCATCTT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MNSYVLSLLGGRLLIAAVTLLIVAFTVFAATEVLPGDVAEVLLGQSATPEAVAGLRAAMHLNDPAILRFLHWLAGLLTGD
LGRSYANNMPVKDLIGTRLLSSLKLAGATTLFSVPVALTLGILSAMWRGSLFDRTVTVLTIAVISVPEFMVATSAVLIFA
VYLKWLPALSFTSDSLTFLQLLRALAMPIITLSCVISAQMIRMTRAAVIETLNTPYVEMALLKGASRPRMVLRHALPNAI
GPIANAVALSLSYLLGGVIIVETIFNYPGIAKLMVDAVSTRDLPLIQSCAMIFCVVYLALITLADMIAILSNPRLRR

Sequences:

>Translated_317_residues
MNSYVLSLLGGRLLIAAVTLLIVAFTVFAATEVLPGDVAEVLLGQSATPEAVAGLRAAMHLNDPAILRFLHWLAGLLTGD
LGRSYANNMPVKDLIGTRLLSSLKLAGATTLFSVPVALTLGILSAMWRGSLFDRTVTVLTIAVISVPEFMVATSAVLIFA
VYLKWLPALSFTSDSLTFLQLLRALAMPIITLSCVISAQMIRMTRAAVIETLNTPYVEMALLKGASRPRMVLRHALPNAI
GPIANAVALSLSYLLGGVIIVETIFNYPGIAKLMVDAVSTRDLPLIQSCAMIFCVVYLALITLADMIAILSNPRLRR
>Mature_317_residues
MNSYVLSLLGGRLLIAAVTLLIVAFTVFAATEVLPGDVAEVLLGQSATPEAVAGLRAAMHLNDPAILRFLHWLAGLLTGD
LGRSYANNMPVKDLIGTRLLSSLKLAGATTLFSVPVALTLGILSAMWRGSLFDRTVTVLTIAVISVPEFMVATSAVLIFA
VYLKWLPALSFTSDSLTFLQLLRALAMPIITLSCVISAQMIRMTRAAVIETLNTPYVEMALLKGASRPRMVLRHALPNAI
GPIANAVALSLSYLLGGVIIVETIFNYPGIAKLMVDAVSTRDLPLIQSCAMIFCVVYLALITLADMIAILSNPRLRR

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=316, Percent_Identity=32.5949367088608, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1789965, Length=330, Percent_Identity=28.4848484848485, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787497, Length=308, Percent_Identity=29.5454545454545, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1789888, Length=270, Percent_Identity=31.1111111111111, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787761, Length=316, Percent_Identity=28.1645569620253, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=24.2647058823529, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788504, Length=282, Percent_Identity=26.241134751773, Blast_Score=84, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33948; Mature: 33948

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSYVLSLLGGRLLIAAVTLLIVAFTVFAATEVLPGDVAEVLLGQSATPEAVAGLRAAMH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHH
LNDPAILRFLHWLAGLLTGDLGRSYANNMPVKDLIGTRLLSSLKLAGATTLFSVPVALTL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GILSAMWRGSLFDRTVTVLTIAVISVPEFMVATSAVLIFAVYLKWLPALSFTSDSLTFLQ
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LLRALAMPIITLSCVISAQMIRMTRAAVIETLNTPYVEMALLKGASRPRMVLRHALPNAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCHHH
GPIANAVALSLSYLLGGVIIVETIFNYPGIAKLMVDAVSTRDLPLIQSCAMIFCVVYLAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
ITLADMIAILSNPRLRR
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNSYVLSLLGGRLLIAAVTLLIVAFTVFAATEVLPGDVAEVLLGQSATPEAVAGLRAAMH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHH
LNDPAILRFLHWLAGLLTGDLGRSYANNMPVKDLIGTRLLSSLKLAGATTLFSVPVALTL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GILSAMWRGSLFDRTVTVLTIAVISVPEFMVATSAVLIFAVYLKWLPALSFTSDSLTFLQ
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LLRALAMPIITLSCVISAQMIRMTRAAVIETLNTPYVEMALLKGASRPRMVLRHALPNAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCHHH
GPIANAVALSLSYLLGGVIIVETIFNYPGIAKLMVDAVSTRDLPLIQSCAMIFCVVYLAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
ITLADMIAILSNPRLRR
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]