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The map label for this gene is potC [H]

Identifier: 158423613

GI number: 158423613

Start: 2293168

End: 2293968

Strand: Reverse

Name: potC [H]

Synonym: AZC_1989

Alternate gene names: 158423613

Gene position: 2293968-2293168 (Counterclockwise)

Preceding gene: 158423614

Following gene: 158423612

Centisome position: 42.72

GC content: 66.29

Gene sequence:

>801_bases
ATGACCCTCACCGAGCGCATCGCCTCTGTCCTCGTCTGGGTCATCGCGGCCTTCACGGTCATTTTCCTGCTGACGCCGCT
GGTGGTGACGGTGGCCGTCTCCTTCGGCTCCAGTGCCGTCTTCACCCTTCCGGCGCCCGCCTGGTCACTGCGCTGGTACG
AGGCCATGGGTCGCTCGCGGGATCTCTGGGGCGCGGTTGCCACCTCGCTACAGCTCGCCGCGCTCTCGACGCTCATTGCG
CTGGTGCTCGGCACGCTGGCGGCCATTGGCCTGCTGCGCGGACGCTTTCCGGGGCGCGAGAGCGTTGTCACCTTCCTCGT
CTCGCCGCTGATGCTGCCGGGGCTCGTGCTCGGCATCGCCATGCTGGAGGGTTTTCGCGCTGCCGGCCTGCGGGCGGTGT
GGCCGAGCCTTCTCTTCGCCCATGTGGTGATCACGCTGCCCTATGTGGTGCGCACCGTATATGGCGCGCTGAGCCTGTTC
GATTTCACGCTCATCGACGCCGCGCGCACGCTTGGCCTGTCCTATCCGAAGGCCATCGCCAAGGTGCTGGTGCCGGGCCT
TGCGCCCGCCTTCGTCACCTCCGGCATGTTCGCCTTCCTCGCCTCCATGGACAATTACCCCATCTCCATCTTCTTCACGA
ACGCCTGGACCAAGACCTTGCCCATCCAGATGCTGCAATATGTGGAAGAGAGCCCCGATCCGATGATCGCGGCCATCTCC
ACCCTCCTCATCCTGCTCGCCATGCTCGTCCTCGTCGCCGGGGACCGGCTGGTGGGCCTGCGGCGGATGGCGGACCTGTG
A

Upstream 100 bases:

>100_bases
ACGAGCAACTGGGCTCCACCACAGCCGTCGTGCTGCTGATCCTCTCGGTGGCCGTGGTGGTGGCGAGCGCGGCGCTCTCC
CGCCGGTTTGGAGGCGCGTC

Downstream 100 bases:

>100_bases
TGCCGGCGAACGTGACGAGCGACCGCGATTTTCGCGGCTATGCCGGCCGGCCGCCGCAGGTGCGCTGGCCCAATGGCGCG
CGCCTCGCACTGTCCATCGT

Product: ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MTLTERIASVLVWVIAAFTVIFLLTPLVVTVAVSFGSSAVFTLPAPAWSLRWYEAMGRSRDLWGAVATSLQLAALSTLIA
LVLGTLAAIGLLRGRFPGRESVVTFLVSPLMLPGLVLGIAMLEGFRAAGLRAVWPSLLFAHVVITLPYVVRTVYGALSLF
DFTLIDAARTLGLSYPKAIAKVLVPGLAPAFVTSGMFAFLASMDNYPISIFFTNAWTKTLPIQMLQYVEESPDPMIAAIS
TLLILLAMLVLVAGDRLVGLRRMADL

Sequences:

>Translated_266_residues
MTLTERIASVLVWVIAAFTVIFLLTPLVVTVAVSFGSSAVFTLPAPAWSLRWYEAMGRSRDLWGAVATSLQLAALSTLIA
LVLGTLAAIGLLRGRFPGRESVVTFLVSPLMLPGLVLGIAMLEGFRAAGLRAVWPSLLFAHVVITLPYVVRTVYGALSLF
DFTLIDAARTLGLSYPKAIAKVLVPGLAPAFVTSGMFAFLASMDNYPISIFFTNAWTKTLPIQMLQYVEESPDPMIAAIS
TLLILLAMLVLVAGDRLVGLRRMADL
>Mature_265_residues
TLTERIASVLVWVIAAFTVIFLLTPLVVTVAVSFGSSAVFTLPAPAWSLRWYEAMGRSRDLWGAVATSLQLAALSTLIAL
VLGTLAAIGLLRGRFPGRESVVTFLVSPLMLPGLVLGIAMLEGFRAAGLRAVWPSLLFAHVVITLPYVVRTVYGALSLFD
FTLIDAARTLGLSYPKAIAKVLVPGLAPAFVTSGMFAFLASMDNYPISIFFTNAWTKTLPIQMLQYVEESPDPMIAAIST
LLILLAMLVLVAGDRLVGLRRMADL

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=222, Percent_Identity=31.981981981982, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1787714, Length=228, Percent_Identity=32.4561403508772, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787081, Length=230, Percent_Identity=31.7391304347826, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28617; Mature: 28486

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTERIASVLVWVIAAFTVIFLLTPLVVTVAVSFGSSAVFTLPAPAWSLRWYEAMGRSR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCC
DLWGAVATSLQLAALSTLIALVLGTLAAIGLLRGRFPGRESVVTFLVSPLMLPGLVLGIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
MLEGFRAAGLRAVWPSLLFAHVVITLPYVVRTVYGALSLFDFTLIDAARTLGLSYPKAIA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
KVLVPGLAPAFVTSGMFAFLASMDNYPISIFFTNAWTKTLPIQMLQYVEESPDPMIAAIS
HHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHH
TLLILLAMLVLVAGDRLVGLRRMADL
HHHHHHHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
TLTERIASVLVWVIAAFTVIFLLTPLVVTVAVSFGSSAVFTLPAPAWSLRWYEAMGRSR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCC
DLWGAVATSLQLAALSTLIALVLGTLAAIGLLRGRFPGRESVVTFLVSPLMLPGLVLGIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
MLEGFRAAGLRAVWPSLLFAHVVITLPYVVRTVYGALSLFDFTLIDAARTLGLSYPKAIA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
KVLVPGLAPAFVTSGMFAFLASMDNYPISIFFTNAWTKTLPIQMLQYVEESPDPMIAAIS
HHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHH
TLLILLAMLVLVAGDRLVGLRRMADL
HHHHHHHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]