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The map label for this gene is ddpA [H]

Identifier: 158423583

GI number: 158423583

Start: 2260587

End: 2262218

Strand: Reverse

Name: ddpA [H]

Synonym: AZC_1959

Alternate gene names: 158423583

Gene position: 2262218-2260587 (Counterclockwise)

Preceding gene: 158423584

Following gene: 158423582

Centisome position: 42.13

GC content: 63.17

Gene sequence:

>1632_bases
ATGATCGACGTGTTCCTGAAACCCACACGCCGCCAGTGGCTCATGGGCGCAACGGCCCTCGTTGCAGTGAGCCTGACGGC
GCCCGCCGCCCACGCCCAGAGCCGCGCGGAGACCCTGCGCTATGTCACGGGCGCGGTGGTGAACACGCTCGACCCAACCA
TGCCCGGCTCCACGCGCGAAGCATTCGCGGTGAGTCTCAGCACCTATGACCGGCTGGTCTCCTTCGGACGCAAGCAGCTC
AACGGCAAATGGGTGTTCGATCTCGACACCGTGCGCGGCGAACTGGCGGAAAGCTATGACGTGAGCCCGGACGGGCTCAA
GATCACCTTCCACCTGCGCAAGGACGCCAAGTTCCAGGACGGCACGCCGGTGACGGCGGAGGACGTGAAGTGGTCGCTCG
ACCGCGCGGTGACGGCCAATTCGCTCGCCAAGGCGCAGTTGCTCACCGGCTCGCTCACCAGCCCCGACCAGTTCAAGGTG
ATCGATCCCTACACCTTCGAGGTGACGCTGCCCAAGCCTGACAAGCTGGCGCTGCCGAACCTTGCCACCGTCTATCCGGT
GATCTTCAATTCCAAGGTCGCCAAAGCCCATGCCACGGCGGACGACCCGTGGGCGCAGAACTGGCTGAAGGAGAATACCG
CCGGCTCCGGCGCCTTCGTCATCGAGACCTTCAAGCCCGCCGAGCAGGTGATCCTCAAGCGCAACGATGCGTGGAACCGC
GGCCCCGCCAACAGCCAGGCCGCGTTCAAGCGCCTCATCGTGCAGACCGTGCCGGAAGCCTCCACCCGCGCCAATCTGGT
GGAGCGCGGCGACGCCGACATCGTCATCGACCTTCAGCCCACGGATGCCGCGGCGCTGGAAGCCAAGGGCAAGCTGAAGG
TGATCTCCACCCCGCAGTACAATGCGATCTCCTTCATCTCGTTCAACAACAAGATCCCGCCGTTCGACAATGTGAACGTG
CGCAAGGCCATCGCTTATGCGCTGCCCTATGACGACATGTTCAAGGCTGCCCTGTTCGGACGCGGCTTCCCGCTCTATGG
CGCCACCTGGACGGACGGCAAGGCGCCCTCCGGCGGCTTCCCCATTCCGCAGCCGGTGAAGCTGGACCTTGCCAAGGCCA
AGGAATATCTCGCCGCCGCCGGAATGCCGGACGGTTTCTCCACCACCTTCTCCTTCAATGTGGGACAGGCGAACGTCGCC
GAGCCCATGGCGGCGCTGCTGAAGGAGTCGCTGGCCAAGATCGGCATCAAGGTGGAGATCCAGAAGCTCCCCGACGCCCA
GATGTCCACGCTGATCAACGAGAAGAAGCTGCCCTTCTTCACCGAGAACATCGTCGCCTGGCTGCCGTCGATGGATTATT
TCTACCGGAATTTCTACATCGGCAATATCCGCTGGAATTACTCCTCGCTGGACAATCCGCAGATCACCGAGATCGCGCAG
GCCGCGCGCTTCGAGCAGGACAAGGCGAAGTATGAGGCCATGGGCCGCGAGCTCAATACCCTCAACTTCGAGATCATGCC
GCAGATCCCGATCTGGCAGGCCTCTCAGGATGCGGTGATGGCCCCCTCCATCGAGGGCTACACCTACCAGTTCCACCGGC
AGGTGGACTATCGCGACCTGAGCCGCAAATGA

Upstream 100 bases:

>100_bases
GCTGGAGGCGTGAACGCCAACGGCATACCAATTGCATACATCGGTGGCGGCGTACTCCAGCGCCGCACCGCCCGTGTTCC
CCTTCCAGGAGAGCTTGCCG

Downstream 100 bases:

>100_bases
GCCAGGTCGCCCTCACGGCGCGGCGGGCGGGACGACGGTTTCTGTCGTCCCTACCGGCCCTCCTCGGCGTGCTCGTCTTC
ACATTCCTTCTGATGCGCGT

Product: ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MIDVFLKPTRRQWLMGATALVAVSLTAPAAHAQSRAETLRYVTGAVVNTLDPTMPGSTREAFAVSLSTYDRLVSFGRKQL
NGKWVFDLDTVRGELAESYDVSPDGLKITFHLRKDAKFQDGTPVTAEDVKWSLDRAVTANSLAKAQLLTGSLTSPDQFKV
IDPYTFEVTLPKPDKLALPNLATVYPVIFNSKVAKAHATADDPWAQNWLKENTAGSGAFVIETFKPAEQVILKRNDAWNR
GPANSQAAFKRLIVQTVPEASTRANLVERGDADIVIDLQPTDAAALEAKGKLKVISTPQYNAISFISFNNKIPPFDNVNV
RKAIAYALPYDDMFKAALFGRGFPLYGATWTDGKAPSGGFPIPQPVKLDLAKAKEYLAAAGMPDGFSTTFSFNVGQANVA
EPMAALLKESLAKIGIKVEIQKLPDAQMSTLINEKKLPFFTENIVAWLPSMDYFYRNFYIGNIRWNYSSLDNPQITEIAQ
AARFEQDKAKYEAMGRELNTLNFEIMPQIPIWQASQDAVMAPSIEGYTYQFHRQVDYRDLSRK

Sequences:

>Translated_543_residues
MIDVFLKPTRRQWLMGATALVAVSLTAPAAHAQSRAETLRYVTGAVVNTLDPTMPGSTREAFAVSLSTYDRLVSFGRKQL
NGKWVFDLDTVRGELAESYDVSPDGLKITFHLRKDAKFQDGTPVTAEDVKWSLDRAVTANSLAKAQLLTGSLTSPDQFKV
IDPYTFEVTLPKPDKLALPNLATVYPVIFNSKVAKAHATADDPWAQNWLKENTAGSGAFVIETFKPAEQVILKRNDAWNR
GPANSQAAFKRLIVQTVPEASTRANLVERGDADIVIDLQPTDAAALEAKGKLKVISTPQYNAISFISFNNKIPPFDNVNV
RKAIAYALPYDDMFKAALFGRGFPLYGATWTDGKAPSGGFPIPQPVKLDLAKAKEYLAAAGMPDGFSTTFSFNVGQANVA
EPMAALLKESLAKIGIKVEIQKLPDAQMSTLINEKKLPFFTENIVAWLPSMDYFYRNFYIGNIRWNYSSLDNPQITEIAQ
AARFEQDKAKYEAMGRELNTLNFEIMPQIPIWQASQDAVMAPSIEGYTYQFHRQVDYRDLSRK
>Mature_543_residues
MIDVFLKPTRRQWLMGATALVAVSLTAPAAHAQSRAETLRYVTGAVVNTLDPTMPGSTREAFAVSLSTYDRLVSFGRKQL
NGKWVFDLDTVRGELAESYDVSPDGLKITFHLRKDAKFQDGTPVTAEDVKWSLDRAVTANSLAKAQLLTGSLTSPDQFKV
IDPYTFEVTLPKPDKLALPNLATVYPVIFNSKVAKAHATADDPWAQNWLKENTAGSGAFVIETFKPAEQVILKRNDAWNR
GPANSQAAFKRLIVQTVPEASTRANLVERGDADIVIDLQPTDAAALEAKGKLKVISTPQYNAISFISFNNKIPPFDNVNV
RKAIAYALPYDDMFKAALFGRGFPLYGATWTDGKAPSGGFPIPQPVKLDLAKAKEYLAAAGMPDGFSTTFSFNVGQANVA
EPMAALLKESLAKIGIKVEIQKLPDAQMSTLINEKKLPFFTENIVAWLPSMDYFYRNFYIGNIRWNYSSLDNPQITEIAQ
AARFEQDKAKYEAMGRELNTLNFEIMPQIPIWQASQDAVMAPSIEGYTYQFHRQVDYRDLSRK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=520, Percent_Identity=27.5, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1787052, Length=429, Percent_Identity=28.2051282051282, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1789966, Length=425, Percent_Identity=26.5882352941176, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1787495, Length=537, Percent_Identity=23.6499068901304, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1787551, Length=349, Percent_Identity=24.6418338108883, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1789397, Length=546, Percent_Identity=22.7106227106227, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI87081878, Length=458, Percent_Identity=24.4541484716157, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789887, Length=353, Percent_Identity=24.6458923512748, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60190; Mature: 60190

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDVFLKPTRRQWLMGATALVAVSLTAPAAHAQSRAETLRYVTGAVVNTLDPTMPGSTRE
CEEEEECCCHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
AFAVSLSTYDRLVSFGRKQLNGKWVFDLDTVRGELAESYDVSPDGLKITFHLRKDAKFQD
HEEEEHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCC
GTPVTAEDVKWSLDRAVTANSLAKAQLLTGSLTSPDQFKVIDPYTFEVTLPKPDKLALPN
CCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEECCEEEEEECCCCCCCCCCC
LATVYPVIFNSKVAKAHATADDPWAQNWLKENTAGSGAFVIETFKPAEQVILKRNDAWNR
HHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHEECCCCCCC
GPANSQAAFKRLIVQTVPEASTRANLVERGDADIVIDLQPTDAAALEAKGKLKVISTPQY
CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCEEEEECCCC
NAISFISFNNKIPPFDNVNVRKAIAYALPYDDMFKAALFGRGFPLYGATWTDGKAPSGGF
CEEEEEEECCCCCCCCCCCHHHHEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PIPQPVKLDLAKAKEYLAAAGMPDGFSTTFSFNVGQANVAEPMAALLKESLAKIGIKVEI
CCCCCCEEEHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEE
QKLPDAQMSTLINEKKLPFFTENIVAWLPSMDYFYRNFYIGNIRWNYSSLDNPQITEIAQ
EECCCHHHHHHHCCCCCCCHHHHHHHHCCCHHHEEHEEEEEEEEECCCCCCCCHHHHHHH
AARFEQDKAKYEAMGRELNTLNFEIMPQIPIWQASQDAVMAPSIEGYTYQFHRQVDYRDL
HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCEEEEEECCCHHHC
SRK
CCC
>Mature Secondary Structure
MIDVFLKPTRRQWLMGATALVAVSLTAPAAHAQSRAETLRYVTGAVVNTLDPTMPGSTRE
CEEEEECCCHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
AFAVSLSTYDRLVSFGRKQLNGKWVFDLDTVRGELAESYDVSPDGLKITFHLRKDAKFQD
HEEEEHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCC
GTPVTAEDVKWSLDRAVTANSLAKAQLLTGSLTSPDQFKVIDPYTFEVTLPKPDKLALPN
CCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEECCEEEEEECCCCCCCCCCC
LATVYPVIFNSKVAKAHATADDPWAQNWLKENTAGSGAFVIETFKPAEQVILKRNDAWNR
HHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHEECCCCCCC
GPANSQAAFKRLIVQTVPEASTRANLVERGDADIVIDLQPTDAAALEAKGKLKVISTPQY
CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCEEEEECCCC
NAISFISFNNKIPPFDNVNVRKAIAYALPYDDMFKAALFGRGFPLYGATWTDGKAPSGGF
CEEEEEEECCCCCCCCCCCHHHHEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PIPQPVKLDLAKAKEYLAAAGMPDGFSTTFSFNVGQANVAEPMAALLKESLAKIGIKVEI
CCCCCCEEEHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEE
QKLPDAQMSTLINEKKLPFFTENIVAWLPSMDYFYRNFYIGNIRWNYSSLDNPQITEIAQ
EECCCHHHHHHHCCCCCCCHHHHHHHHCCCHHHEEHEEEEEEEEECCCCCCCCHHHHHHH
AARFEQDKAKYEAMGRELNTLNFEIMPQIPIWQASQDAVMAPSIEGYTYQFHRQVDYRDL
HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCEEEEEECCCHHHC
SRK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]