| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is hmuR [H]
Identifier: 158423256
GI number: 158423256
Start: 1863585
End: 1865843
Strand: Reverse
Name: hmuR [H]
Synonym: AZC_1632
Alternate gene names: 158423256
Gene position: 1865843-1863585 (Counterclockwise)
Preceding gene: 158423257
Following gene: 158423254
Centisome position: 34.75
GC content: 63.17
Gene sequence:
>2259_bases TTGGTGGTGGAATCGTCGTCATTCGGCGCCATGGGACGGGGAGCCTGCGGCGGCCACGCAGCTTTTTGGAAAGAACCCAT GGCCCGCATGCACGACATGGCCCGCGCAGAGCACGCGCTTATATTGATCAATAAATCACTTATGATCGGCATCTCCCTGG CGACCCTCCTTGCCGCCGCCCCCGCGCTCGCGCAGCAGGCCGCCAGCGGTGCGCGCAGCACACCCGCCACGGCTACAGCG CCCGCAGGGAATGTAAATGGCGCCACAGGCGGCGACAGCCAGCAGGCGTTGCCCACGATCAGCGTCAATGACGCGGGCAA CAGCCTGTTCGGCGATCCCTATGCGACGCCGGCGGCCGTCAGCAGCGTAGACCTGCTGAACAGTCCCGGCGACTATGAGC GGCTCGACGATGTGCTGCGTTCCGTGCCCGGCACCTTCACCACCCAGAGCACCTCGAACCCCGGCGTTGCGGTCAACATT CGCGGTTTCCAGGGGATGGGCCGCGTCAACATGATGATCGACGGGGTGCGCCAGAACTTCCGCTTCGTCGGGCACGAGGC GGGCGGCTTCACCTATGTGGACGACCAGCTGCTGGCGGGCATGGATATCGCCCGCGGGGCGGTCAGCACCGCAGGCGGGG CCGGCGCGCTGGCCGGAGCGGTCAACATGCGCACGCTCGGCATCGACGACATCATCAAACCCGGCAGCACATGGGGCGCC ATCGCCAATGTCCAGTGGGGCAGTAACGGGCAGGGCTGGCAGGAAATGGTGGCCAGCGCCGTGCGCATGAACGACCGCTT CGCGGTGGGCGGCGCGGTAGCGACCCGCGACACCGGCAATTACAAGAACGGTGACGGACAGACCGTGCCCTATACCGGGC AGGACCTCACGTCCGGCCTGCTCAAGGCGGATATGAAGCTCACGGACGATTCCCGCCTGAAACTCGGCGCCGTCTTCTAC AACAATTTCTTCTATGCGGATTCCGCCGATCAGCACGTGCGCAACAACACCTTCACCGGCAATTACAGCTATACGCCGGG CAACGACTGGATCGACTTCCGCCTCAACGCCTATCTGAACGACCTCAAGATGGTCTACGGCAATGTGCCGGCGACCACGA GTTCGTATCGCGGCCGGGTGATCGACGACCGAGGCTGGGGCTTCGACACCTCCAACACCTCGCGCTTCCTGCTCGGTCAG GTGGCCGTCGCCACGACCTATGGGGCCGAATATTTCTATGACGATGTCAGCAGCACCAACACGGTGACGCCCTCGCTCTA TGGTGGCGTGAACCCGGCCGGCACGAGCGCCATCGGCGGCGTGTTCGACGAGACCAAGTTCAACTATTCCATCTTCGAAC TCATCGTGGGCCTGCGCTACGACTTCTTCAACCTGAACGGCTCCGGATATGAGAACTCCATGGGCGGCGCGGTGCCCGTG GGTCCATGGACGGTGGATCAGGACAAGGGCCGCTTCGACCCGAAGGTCACCTTCGCCATCAGCCCGTTCGACTGGCTGCA GCCGTATGTGACCTATGCGGAAACCATGCGCGCGCCGACCGCCTCGGAAACCATGATCGGCGGCGAGCATCCCGGCACGA GCGTCAGCTATTCCGCCAATCCCTATCTCCAGCCGGAGGTCTCGAAGGGCTGGGAATTCGGCGTCAACATCCGCCGGAAC GGCATCTTCACGGCCAACGATCAGCTGCGCCTGAAGGCGGACTACTTCACGAACGACATCGACAATTACATCGTCACCTG TCGAAAGACGCAGTATTATTTCTGCAACGTGGCAGGCACCTCCACCGTGAGCGGTGTGGAATTCGAGGCCCATTACGATG CCCGGAAGGTCTTCGCGGACCTGACCTACACGCACAATACCAACGACCTGCCTGCGCAGACACAGGGCTTCGGCGCCAAT CAGTATCTGCCGGAGGACATCGTGACCGTTTCGGCGGGCCTGCGCTTCCTGGAGGAGAAGCTGTCCGTCGGCGGCCGCTA CACCTATGTGTCGGAAGGGCAGACGCTGGCCTATAACGCCAGCTTCCTCGGCACGGTCAGCTCCACGCCCTCACCCGCCT ACAACATCGTCGATCTGTTCAGCAGCTACGCCGTCAGCGACAAGCTGACGTTCCGGTTTGATGCCACGAACCTGCTCAAT GAAAACTACACCCCTGCCCTCTCCATCCAGCCCACCGGCTTCTCGGGAGACACGGGCCAGGGCCGCACCTACCTCCTGAG CCTGCGCGCCCACATCTGA
Upstream 100 bases:
>100_bases TCATACAAATTCAACGTGACACTGAAACAGTTATAAATACAAACGCAATTACATCTCATTGACTCGTCAATTCGCTGGCA TTTTACAGGTGCAGTGACGA
Downstream 100 bases:
>100_bases CAGGGCGCGAGGCAGCGGCGGCGCGGATGCTCCCGCGCCGCCCTTTCAGTTGCGTCCGCGTCCCGTGCTGCCGGCGTTCA GCCCACCGCCTTGATCTCGT
Product: TonB-dependent haem/haemoglobin receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 752; Mature: 752
Protein sequence:
>752_residues MVVESSSFGAMGRGACGGHAAFWKEPMARMHDMARAEHALILINKSLMIGISLATLLAAAPALAQQAASGARSTPATATA PAGNVNGATGGDSQQALPTISVNDAGNSLFGDPYATPAAVSSVDLLNSPGDYERLDDVLRSVPGTFTTQSTSNPGVAVNI RGFQGMGRVNMMIDGVRQNFRFVGHEAGGFTYVDDQLLAGMDIARGAVSTAGGAGALAGAVNMRTLGIDDIIKPGSTWGA IANVQWGSNGQGWQEMVASAVRMNDRFAVGGAVATRDTGNYKNGDGQTVPYTGQDLTSGLLKADMKLTDDSRLKLGAVFY NNFFYADSADQHVRNNTFTGNYSYTPGNDWIDFRLNAYLNDLKMVYGNVPATTSSYRGRVIDDRGWGFDTSNTSRFLLGQ VAVATTYGAEYFYDDVSSTNTVTPSLYGGVNPAGTSAIGGVFDETKFNYSIFELIVGLRYDFFNLNGSGYENSMGGAVPV GPWTVDQDKGRFDPKVTFAISPFDWLQPYVTYAETMRAPTASETMIGGEHPGTSVSYSANPYLQPEVSKGWEFGVNIRRN GIFTANDQLRLKADYFTNDIDNYIVTCRKTQYYFCNVAGTSTVSGVEFEAHYDARKVFADLTYTHNTNDLPAQTQGFGAN QYLPEDIVTVSAGLRFLEEKLSVGGRYTYVSEGQTLAYNASFLGTVSSTPSPAYNIVDLFSSYAVSDKLTFRFDATNLLN ENYTPALSIQPTGFSGDTGQGRTYLLSLRAHI
Sequences:
>Translated_752_residues MVVESSSFGAMGRGACGGHAAFWKEPMARMHDMARAEHALILINKSLMIGISLATLLAAAPALAQQAASGARSTPATATA PAGNVNGATGGDSQQALPTISVNDAGNSLFGDPYATPAAVSSVDLLNSPGDYERLDDVLRSVPGTFTTQSTSNPGVAVNI RGFQGMGRVNMMIDGVRQNFRFVGHEAGGFTYVDDQLLAGMDIARGAVSTAGGAGALAGAVNMRTLGIDDIIKPGSTWGA IANVQWGSNGQGWQEMVASAVRMNDRFAVGGAVATRDTGNYKNGDGQTVPYTGQDLTSGLLKADMKLTDDSRLKLGAVFY NNFFYADSADQHVRNNTFTGNYSYTPGNDWIDFRLNAYLNDLKMVYGNVPATTSSYRGRVIDDRGWGFDTSNTSRFLLGQ VAVATTYGAEYFYDDVSSTNTVTPSLYGGVNPAGTSAIGGVFDETKFNYSIFELIVGLRYDFFNLNGSGYENSMGGAVPV GPWTVDQDKGRFDPKVTFAISPFDWLQPYVTYAETMRAPTASETMIGGEHPGTSVSYSANPYLQPEVSKGWEFGVNIRRN GIFTANDQLRLKADYFTNDIDNYIVTCRKTQYYFCNVAGTSTVSGVEFEAHYDARKVFADLTYTHNTNDLPAQTQGFGAN QYLPEDIVTVSAGLRFLEEKLSVGGRYTYVSEGQTLAYNASFLGTVSSTPSPAYNIVDLFSSYAVSDKLTFRFDATNLLN ENYTPALSIQPTGFSGDTGQGRTYLLSLRAHI >Mature_752_residues MVVESSSFGAMGRGACGGHAAFWKEPMARMHDMARAEHALILINKSLMIGISLATLLAAAPALAQQAASGARSTPATATA PAGNVNGATGGDSQQALPTISVNDAGNSLFGDPYATPAAVSSVDLLNSPGDYERLDDVLRSVPGTFTTQSTSNPGVAVNI RGFQGMGRVNMMIDGVRQNFRFVGHEAGGFTYVDDQLLAGMDIARGAVSTAGGAGALAGAVNMRTLGIDDIIKPGSTWGA IANVQWGSNGQGWQEMVASAVRMNDRFAVGGAVATRDTGNYKNGDGQTVPYTGQDLTSGLLKADMKLTDDSRLKLGAVFY NNFFYADSADQHVRNNTFTGNYSYTPGNDWIDFRLNAYLNDLKMVYGNVPATTSSYRGRVIDDRGWGFDTSNTSRFLLGQ VAVATTYGAEYFYDDVSSTNTVTPSLYGGVNPAGTSAIGGVFDETKFNYSIFELIVGLRYDFFNLNGSGYENSMGGAVPV GPWTVDQDKGRFDPKVTFAISPFDWLQPYVTYAETMRAPTASETMIGGEHPGTSVSYSANPYLQPEVSKGWEFGVNIRRN GIFTANDQLRLKADYFTNDIDNYIVTCRKTQYYFCNVAGTSTVSGVEFEAHYDARKVFADLTYTHNTNDLPAQTQGFGAN QYLPEDIVTVSAGLRFLEEKLSVGGRYTYVSEGQTLAYNASFLGTVSSTPSPAYNIVDLFSSYAVSDKLTFRFDATNLLN ENYTPALSIQPTGFSGDTGQGRTYLLSLRAHI
Specific function: This protein is involved in the initial step of iron uptake by binding hemin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR011276 - InterPro: IPR010949 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 80750; Mature: 80750
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVESSSFGAMGRGACGGHAAFWKEPMARMHDMARAEHALILINKSLMIGISLATLLAAA CEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEHHHHHHHHHHH PALAQQAASGARSTPATATAPAGNVNGATGGDSQQALPTISVNDAGNSLFGDPYATPAAV HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHH SSVDLLNSPGDYERLDDVLRSVPGTFTTQSTSNPGVAVNIRGFQGMGRVNMMIDGVRQNF HHHHHCCCCCCHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCCCCCEEHHHHHHHHHCC RFVGHEAGGFTYVDDQLLAGMDIARGAVSTAGGAGALAGAVNMRTLGIDDIIKPGSTWGA EEEEECCCCEEEECCHHHHCCHHHCCCCCCCCCCHHHHHCCEEEEECHHHHCCCCCCCCE IANVQWGSNGQGWQEMVASAVRMNDRFAVGGAVATRDTGNYKNGDGQTVPYTGQDLTSGL EEEEEECCCCCCHHHHHHHHHHCCCCEEECCEEEECCCCCCCCCCCCCCCCCCHHHHHHH LKADMKLTDDSRLKLGAVFYNNFFYADSADQHVRNNTFTGNYSYTPGNDWIDFRLNAYLN HHHCCEECCCCCEEEEEEEEECEEEECCCHHHHCCCCCCCCEEECCCCCEEEEEEHHHHH DLKMVYGNVPATTSSYRGRVIDDRGWGFDTSNTSRFLLGQVAVATTYGAEYFYDDVSSTN HHHHEECCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEEEEEEECCCHHEECCCCCCC TVTPSLYGGVNPAGTSAIGGVFDETKFNYSIFELIVGLRYDFFNLNGSGYENSMGGAVPV CCCCHHCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCC GPWTVDQDKGRFDPKVTFAISPFDWLQPYVTYAETMRAPTASETMIGGEHPGTSVSYSAN CCEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCEEEECCC PYLQPEVSKGWEFGVNIRRNGIFTANDQLRLKADYFTNDIDNYIVTCRKTQYYFCNVAGT CCCCCCCCCCCEECEEEEECCEEECCCCEEEEECHHCCCCCCEEEEEEECEEEEEEECCC STVSGVEFEAHYDARKVFADLTYTHNTNDLPAQTQGFGANQYLPEDIVTVSAGLRFLEEK CCCCCEEEEECCCHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH LSVGGRYTYVSEGQTLAYNASFLGTVSSTPSPAYNIVDLFSSYAVSDKLTFRFDATNLLN HCCCCEEEEEECCCEEEECCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHCC ENYTPALSIQPTGFSGDTGQGRTYLLSLRAHI CCCCCEEEEECCCCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MVVESSSFGAMGRGACGGHAAFWKEPMARMHDMARAEHALILINKSLMIGISLATLLAAA CEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEHHHHHHHHHHH PALAQQAASGARSTPATATAPAGNVNGATGGDSQQALPTISVNDAGNSLFGDPYATPAAV HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHH SSVDLLNSPGDYERLDDVLRSVPGTFTTQSTSNPGVAVNIRGFQGMGRVNMMIDGVRQNF HHHHHCCCCCCHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCCCCCEEHHHHHHHHHCC RFVGHEAGGFTYVDDQLLAGMDIARGAVSTAGGAGALAGAVNMRTLGIDDIIKPGSTWGA EEEEECCCCEEEECCHHHHCCHHHCCCCCCCCCCHHHHHCCEEEEECHHHHCCCCCCCCE IANVQWGSNGQGWQEMVASAVRMNDRFAVGGAVATRDTGNYKNGDGQTVPYTGQDLTSGL EEEEEECCCCCCHHHHHHHHHHCCCCEEECCEEEECCCCCCCCCCCCCCCCCCHHHHHHH LKADMKLTDDSRLKLGAVFYNNFFYADSADQHVRNNTFTGNYSYTPGNDWIDFRLNAYLN HHHCCEECCCCCEEEEEEEEECEEEECCCHHHHCCCCCCCCEEECCCCCEEEEEEHHHHH DLKMVYGNVPATTSSYRGRVIDDRGWGFDTSNTSRFLLGQVAVATTYGAEYFYDDVSSTN HHHHEECCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEEEEEEECCCHHEECCCCCCC TVTPSLYGGVNPAGTSAIGGVFDETKFNYSIFELIVGLRYDFFNLNGSGYENSMGGAVPV CCCCHHCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCC GPWTVDQDKGRFDPKVTFAISPFDWLQPYVTYAETMRAPTASETMIGGEHPGTSVSYSAN CCEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCEEEECCC PYLQPEVSKGWEFGVNIRRNGIFTANDQLRLKADYFTNDIDNYIVTCRKTQYYFCNVAGT CCCCCCCCCCCEECEEEEECCEEECCCCEEEEECHHCCCCCCEEEEEEECEEEEEEECCC STVSGVEFEAHYDARKVFADLTYTHNTNDLPAQTQGFGANQYLPEDIVTVSAGLRFLEEK CCCCCEEEEECCCHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH LSVGGRYTYVSEGQTLAYNASFLGTVSSTPSPAYNIVDLFSSYAVSDKLTFRFDATNLLN HCCCCEEEEEECCCEEEECCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHCC ENYTPALSIQPTGFSGDTGQGRTYLLSLRAHI CCCCCEEEEECCCCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9026634; 11586360; 12142430 [H]