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The map label for this gene is rbsC [H]

Identifier: 158423042

GI number: 158423042

Start: 1613914

End: 1614888

Strand: Direct

Name: rbsC [H]

Synonym: AZC_1418

Alternate gene names: 158423042

Gene position: 1613914-1614888 (Clockwise)

Preceding gene: 158423041

Following gene: 158423043

Centisome position: 30.06

GC content: 66.46

Gene sequence:

>975_bases
ATGAGCCTCGCCAGCGACGTTCCGGCGGGCTCGCCCCGCCTCCATCTGTCCAAGGATGTCCAGCAGATCGTCTATCGGCT
GCTCGCCGCCGGCCTGATCTGCCTGGCGCTGGGCATCGCCACCGATGCCTTCTTCACCACCAACAACATCCTCAACGTGC
TGCGTCAGGCGAGCCTGCTGTTCTTCCTCGCCTCCGGCCTCACGCTGGTGATCCTGACGGGCGGGCTCGATCTCTCCATC
GGCGCCAATATCGGCCTCTCGGCGTGCCTCGCCGCCACCGTCATCAAGGCCACGGGCTCGCCGGTGCTGGGCACGCTGAC
GGGGCTCGCCACCGGCTGCGCCATCGGCATCTGCAACGGCCTCATGGTGGCGAAGCTGCGCATCCCCTCCTTCATCGCCA
CCTACGGCATGCTGTGGGTGCTGCACGGCATCACCTATTACTACATGGCCGGCGAGACCATTCATGGCTTCCCGCCCGGC
TTCCGGCAGATCGGCTCGGGGCATTTCCTCGGCATTCCGATCCCGGTCTATCTGATGGTCGTCTTCCTCGTCGCCGGAAC
GATCTTCGCCCAGAGGACCGTGTGGGGGCAGCAGATCTATGCCATCGGCGCCAATCCGGTGGCGGCGCGGCTGACGGGCA
TTCCCATCCACCGCCGGCTGATCCTCGTCTATGGCTTTTCCGGCGCCATGGCGGGCGTCGCCTCCATCGTCTTCCTCGCC
CGTCTCAATTCGGCAGAGGGGGACATCGGCGAGGCCATGACGCTGCCGGCCATCGCGGCGGTGCTCATCGGCGGTGCCTC
GCTGTTCGGCGGCATCGGCAGCGTGTTCGGCACCTTCATCGGCGCCCTCATCCTCACGCTCGTCCTCAACGGCATGAACC
TGCTCGCCATCAACGCCAGCTGGCAGCCGCTCGTGACCGGCGCGATCCTCGTCTTCGCCGTCTGGCTCGACATGTACGGC
CGCAAGAAGGCCTGA

Upstream 100 bases:

>100_bases
GCCTGAACCTCATGGCCGTGCCGTCTTCGGTGCAGGTGGCCTGCATCGGCGCCCTCGTCATCTTCGCCCTCTTCCTCGAC
GGCATGCGGAGCCAGAAGTC

Downstream 100 bases:

>100_bases
GCCGCGTCACCAATCCAGAATAATTACCGGAGGAAACCCAATGTCGAAGCTCAAGCTGTTCGGAGTGGTGCTGCCCGCCG
CCTTGCTGGCCACCAGCGCC

Product: sugar ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSLASDVPAGSPRLHLSKDVQQIVYRLLAAGLICLALGIATDAFFTTNNILNVLRQASLLFFLASGLTLVILTGGLDLSI
GANIGLSACLAATVIKATGSPVLGTLTGLATGCAIGICNGLMVAKLRIPSFIATYGMLWVLHGITYYYMAGETIHGFPPG
FRQIGSGHFLGIPIPVYLMVVFLVAGTIFAQRTVWGQQIYAIGANPVAARLTGIPIHRRLILVYGFSGAMAGVASIVFLA
RLNSAEGDIGEAMTLPAIAAVLIGGASLFGGIGSVFGTFIGALILTLVLNGMNLLAINASWQPLVTGAILVFAVWLDMYG
RKKA

Sequences:

>Translated_324_residues
MSLASDVPAGSPRLHLSKDVQQIVYRLLAAGLICLALGIATDAFFTTNNILNVLRQASLLFFLASGLTLVILTGGLDLSI
GANIGLSACLAATVIKATGSPVLGTLTGLATGCAIGICNGLMVAKLRIPSFIATYGMLWVLHGITYYYMAGETIHGFPPG
FRQIGSGHFLGIPIPVYLMVVFLVAGTIFAQRTVWGQQIYAIGANPVAARLTGIPIHRRLILVYGFSGAMAGVASIVFLA
RLNSAEGDIGEAMTLPAIAAVLIGGASLFGGIGSVFGTFIGALILTLVLNGMNLLAINASWQPLVTGAILVFAVWLDMYG
RKKA
>Mature_323_residues
SLASDVPAGSPRLHLSKDVQQIVYRLLAAGLICLALGIATDAFFTTNNILNVLRQASLLFFLASGLTLVILTGGLDLSIG
ANIGLSACLAATVIKATGSPVLGTLTGLATGCAIGICNGLMVAKLRIPSFIATYGMLWVLHGITYYYMAGETIHGFPPGF
RQIGSGHFLGIPIPVYLMVVFLVAGTIFAQRTVWGQQIYAIGANPVAARLTGIPIHRRLILVYGFSGAMAGVASIVFLAR
LNSAEGDIGEAMTLPAIAAVLIGGASLFGGIGSVFGTFIGALILTLVLNGMNLLAINASWQPLVTGAILVFAVWLDMYGR
KKA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=278, Percent_Identity=41.0071942446043, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1788896, Length=314, Percent_Identity=30.2547770700637, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1790524, Length=280, Percent_Identity=33.9285714285714, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789992, Length=347, Percent_Identity=31.1239193083574, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI145693152, Length=323, Percent_Identity=31.5789473684211, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI87082395, Length=278, Percent_Identity=35.9712230215827, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788471, Length=289, Percent_Identity=34.6020761245675, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787794, Length=255, Percent_Identity=31.3725490196078, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787793, Length=279, Percent_Identity=31.5412186379928, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI145693214, Length=244, Percent_Identity=34.8360655737705, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33709; Mature: 33577

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLASDVPAGSPRLHLSKDVQQIVYRLLAAGLICLALGIATDAFFTTNNILNVLRQASLL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFLASGLTLVILTGGLDLSIGANIGLSACLAATVIKATGSPVLGTLTGLATGCAIGICNG
HHHHCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
LMVAKLRIPSFIATYGMLWVLHGITYYYMAGETIHGFPPGFRQIGSGHFLGIPIPVYLMV
HHEEHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHCCCCEEECCHHHHHHH
VFLVAGTIFAQRTVWGQQIYAIGANPVAARLTGIPIHRRLILVYGFSGAMAGVASIVFLA
HHHHHHHHHHHHHHHCCEEEEECCCCHHHHHCCCCHHEEEEEEEECCHHHHHHHHHHHHH
RLNSAEGDIGEAMTLPAIAAVLIGGASLFGGIGSVFGTFIGALILTLVLNGMNLLAINAS
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
WQPLVTGAILVFAVWLDMYGRKKA
CCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SLASDVPAGSPRLHLSKDVQQIVYRLLAAGLICLALGIATDAFFTTNNILNVLRQASLL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFLASGLTLVILTGGLDLSIGANIGLSACLAATVIKATGSPVLGTLTGLATGCAIGICNG
HHHHCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
LMVAKLRIPSFIATYGMLWVLHGITYYYMAGETIHGFPPGFRQIGSGHFLGIPIPVYLMV
HHEEHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHCCCCEEECCHHHHHHH
VFLVAGTIFAQRTVWGQQIYAIGANPVAARLTGIPIHRRLILVYGFSGAMAGVASIVFLA
HHHHHHHHHHHHHHHCCEEEEECCCCHHHHHCCCCHHEEEEEEEECCHHHHHHHHHHHHH
RLNSAEGDIGEAMTLPAIAAVLIGGASLFGGIGSVFGTFIGALILTLVLNGMNLLAINAS
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
WQPLVTGAILVFAVWLDMYGRKKA
CCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]