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The map label for this gene is cydB [H]

Identifier: 158422977

GI number: 158422977

Start: 1523708

End: 1524697

Strand: Reverse

Name: cydB [H]

Synonym: AZC_1353

Alternate gene names: 158422977

Gene position: 1524697-1523708 (Counterclockwise)

Preceding gene: 158422978

Following gene: 158422972

Centisome position: 28.39

GC content: 64.44

Gene sequence:

>990_bases
ATGACCATGGTCGAGTTCTGGGCCTTCGTTCTGGGGATTTCCATCCTCCTGTACATCCTGCTGGATGGCTTCGATCTCGG
CGTCGGAATGCTCTTTCCGTTCGCTCCCGGCGAAGCCGAGCGCCGCCGCATGCTGGGTTCGATCTCGCCCGTGTGGGACG
GCAACGAAACCTGGCTGGTGGTTTCCGCCGCCACCCTGTTCGGCGCCTTTCCGGCCGTCTTTTCCATCGTCCTGTCGGCC
TTCTATCTGCCGCTCTTCCTCATGCTCGCGGGACTGATTCTCCGCGGCGTGGCCTTCGAGTTCCGCTACAAGGCGACGAC
CTCGCGCCCGCTCTGGGACGCAGGCTTTGTGGTTGGCTCCTATGTGGCCGCCTTCGTGCAGGGCACCGCGGTCGGCGCCA
TCGTGCAGGGCTTGCCCATCGAGAACGGCCTCTACGCCGGCCATGCGCTGAGCTGGGCGAGCCCCTTCTCCCTGTTCTGC
GGCCTCGGCCTGTGCATCGGCTATGCCTTGATGGGCAGTTGCTGGATCGCCGGAAAGTCCACCGGGCCCCTGCGCGACTT
CAGCTTTCGCGTCCTGCCGGCGCTGATGGCGGCGCTGCTGGTGTTCCTGGTGGTGGTCTTCATCTGGTCGGTCGAGATCC
GCCTCCAGGTCCTTCACCGCTGGATTGATCGTCCCGCGCTGCTCGTCTGCCCGCTCCTGGGCCTCGTGGCATTCGCCGGG
CTGGTGCTGTCTGTTCGGCGGCGGAACGAGCGGTTCCTGTTCCTCTGTGGGGCGACGATCTTCATTGCCGCGTTCACGAC
ACTGGCCGGATCCTTCCTGCCCTACATGCTGCCCTTCTCAATGACGATCTGGCAGGCGGCCTCCCCACCCTCCTCCCTGT
CCTTCCTCTTCTGGGGGGCGGGCCTCTTCGTCCTGCCCGTGACGCTCGCCTATACGCTGATCGTCTACTTCGTCTTTCGC
GGAAAGATGACCGAGGAGGGAGAATACTGA

Upstream 100 bases:

>100_bases
TCCCCGCCGCCGCACTTTCACTCTACGGCACCAATCCCAAGCGCCCCCTGTCCATTCCGGGCGCCAGCCCGGGCGTTTCG
GGCGCCGCCAAGACCGGAGA

Downstream 100 bases:

>100_bases
GCGGCCCCGTATCAACCACCGGCTTATGAGCAGAAAGGCGGCCGCTCCGGAATGGGGCGGCCGCCTCGTTTGGATCGCCC
TATCGGGCACGGGCATTTGC

Product: cytochrome bd ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MTMVEFWAFVLGISILLYILLDGFDLGVGMLFPFAPGEAERRRMLGSISPVWDGNETWLVVSAATLFGAFPAVFSIVLSA
FYLPLFLMLAGLILRGVAFEFRYKATTSRPLWDAGFVVGSYVAAFVQGTAVGAIVQGLPIENGLYAGHALSWASPFSLFC
GLGLCIGYALMGSCWIAGKSTGPLRDFSFRVLPALMAALLVFLVVVFIWSVEIRLQVLHRWIDRPALLVCPLLGLVAFAG
LVLSVRRRNERFLFLCGATIFIAAFTTLAGSFLPYMLPFSMTIWQAASPPSSLSFLFWGAGLFVLPVTLAYTLIVYFVFR
GKMTEEGEY

Sequences:

>Translated_329_residues
MTMVEFWAFVLGISILLYILLDGFDLGVGMLFPFAPGEAERRRMLGSISPVWDGNETWLVVSAATLFGAFPAVFSIVLSA
FYLPLFLMLAGLILRGVAFEFRYKATTSRPLWDAGFVVGSYVAAFVQGTAVGAIVQGLPIENGLYAGHALSWASPFSLFC
GLGLCIGYALMGSCWIAGKSTGPLRDFSFRVLPALMAALLVFLVVVFIWSVEIRLQVLHRWIDRPALLVCPLLGLVAFAG
LVLSVRRRNERFLFLCGATIFIAAFTTLAGSFLPYMLPFSMTIWQAASPPSSLSFLFWGAGLFVLPVTLAYTLIVYFVFR
GKMTEEGEY
>Mature_328_residues
TMVEFWAFVLGISILLYILLDGFDLGVGMLFPFAPGEAERRRMLGSISPVWDGNETWLVVSAATLFGAFPAVFSIVLSAF
YLPLFLMLAGLILRGVAFEFRYKATTSRPLWDAGFVVGSYVAAFVQGTAVGAIVQGLPIENGLYAGHALSWASPFSLFCG
LGLCIGYALMGSCWIAGKSTGPLRDFSFRVLPALMAALLVFLVVVFIWSVEIRLQVLHRWIDRPALLVCPLLGLVAFAGL
VLSVRRRNERFLFLCGATIFIAAFTTLAGSFLPYMLPFSMTIWQAASPPSSLSFLFWGAGLFVLPVTLAYTLIVYFVFRG
KMTEEGEY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=364, Percent_Identity=29.1208791208791, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1787213, Length=365, Percent_Identity=29.041095890411, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36080; Mature: 35949

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMVEFWAFVLGISILLYILLDGFDLGVGMLFPFAPGEAERRRMLGSISPVWDGNETWLV
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEE
VSAATLFGAFPAVFSIVLSAFYLPLFLMLAGLILRGVAFEFRYKATTSRPLWDAGFVVGS
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHH
YVAAFVQGTAVGAIVQGLPIENGLYAGHALSWASPFSLFCGLGLCIGYALMGSCWIAGKS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCC
TGPLRDFSFRVLPALMAALLVFLVVVFIWSVEIRLQVLHRWIDRPALLVCPLLGLVAFAG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LVLSVRRRNERFLFLCGATIFIAAFTTLAGSFLPYMLPFSMTIWQAASPPSSLSFLFWGA
HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
GLFVLPVTLAYTLIVYFVFRGKMTEEGEY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TMVEFWAFVLGISILLYILLDGFDLGVGMLFPFAPGEAERRRMLGSISPVWDGNETWLV
CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEE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HHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]