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The map label for this gene is cydA [H]

Identifier: 158422978

GI number: 158422978

Start: 1524694

End: 1526106

Strand: Reverse

Name: cydA [H]

Synonym: AZC_1354

Alternate gene names: 158422978

Gene position: 1526106-1524694 (Counterclockwise)

Preceding gene: 158422979

Following gene: 158422977

Centisome position: 28.42

GC content: 65.11

Gene sequence:

>1413_bases
ATGGAACTCACCCCCCTTCTGCTGTCGCGAATCCAGTTCGCGTTCACAATCTCCTTCCACATCATCTTTCCGGCCTTCAC
CATCGGTCTTGCAGCATGGCTCACCTTTCTGGAGGCGTGCCATCTCTTCACCGGCGAGCGCATCTATCGCCGGCTGTCGG
ATTTCTGGCTGAAGATCTTCGCCGTGGCCTTCGGCCTCGGCGTGGTCTCCGGCATCGTCATGGCCTTCCAGTTCGGAACC
AACTGGAGCGAGCTCTCGCGCCGCACCGGCCCGATCCAGGGACCGCTGCTGGGCTATGAGAGCTTCACCGCCTTTGCGCT
CGAGGCGGCGTTCTTCGGCGTGCTGATGTTCGGACGGGACCGGGTGCCACGCTGGGCCTATCTCGGCGCCTGCCTGATGG
TGTCGCTCGGCACCAGCCTGTCGGCCTTCTGGATCATGGTGAACAACAGCTGGATGCAGTACCCGACCGGCTTCAGCCTG
ACGCCGGACGGCGTCTTCGTGCCCACGGACTGGTCCGCCATCATCTTCAATCAGGCCGTCTGGACACGCTTCCCGCACAT
GATCATCGCGGCCTATGTGACATCCGCCTTCTGCGTGGCCGCCACGGGCGCGTGGTACATGCTCCGCGGCACGGCCGTGC
AGGAGGGCCGCGCGATGGCGGTCATGGGCCTGCGGCTGGCGGCCATCCTGGTGCCCGTCCAGCTCGGGTTCGGCCATCTC
GTGGGCGATTTCGTCCACGACAAGCAGCCCGCGAAGTTCGCGGCCATCGAGGGACGCTGGAACGATCAGCAGCCGGCGAG
CGAAATTCTCGTCGCCTGGCCGGACTCCGAGAATGAGCGCAATCTCTTCGAGATCTCCGTGCCTTATCTCGGCAGCGTGA
TCGGCTCCATGAGCCTCACATCGAAGGAACTGGGCATCAAAAGCTTCGCGCCGCAGGATCGCCCGCCCGTCGCCATCCCG
TTCTTCGCGTTCCGGATCATGGTCGGCTGCGGCCTCGTGATGCTGGCGCTCGCCTGGATCGGATCGTGGCTCAGCTTCAG
CGAGCGCCTGCTCAAGGCGCGGCTCTTCCTCGTCGCGACATTCTTGTCGTTTCCGCTTGGGTTCATCGCGACCCTGACCG
GGTGGTTCACCGCAGAGGTCGGCCGGCAGCCCTGGGTGGTCTATGGCCAGCTTCGGACTGCGGAGGCCGCAACACCGTTC
CTGACGTCGCAGGAGGTCGCGACAACCTTCGCCCTGGTCGCCGCCGTCTATGCGCTCATCTTCGGATTCGGCGTCCTCTA
CATCTACCGGCTCCTGCGGGCCGGCCCGATCCCCGCCGCCGCACTTTCACTCTACGGCACCAATCCCAAGCGCCCCCTGT
CCATTCCGGGCGCCAGCCCGGGCGTTTCGGGCGCCGCCAAGACCGGAGAATGA

Upstream 100 bases:

>100_bases
TAATCGACCTCGCCAGCACCAACCTGCTGCCGCGCTGAGCCCGACCGCCTCCTCGCATCGCCCCTGCTCGTGCCGGTTCC
TCAGAACGCGGGATACTCCC

Downstream 100 bases:

>100_bases
CCATGGTCGAGTTCTGGGCCTTCGTTCTGGGGATTTCCATCCTCCTGTACATCCTGCTGGATGGCTTCGATCTCGGCGTC
GGAATGCTCTTTCCGTTCGC

Product: cytochrome BD2 subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MELTPLLLSRIQFAFTISFHIIFPAFTIGLAAWLTFLEACHLFTGERIYRRLSDFWLKIFAVAFGLGVVSGIVMAFQFGT
NWSELSRRTGPIQGPLLGYESFTAFALEAAFFGVLMFGRDRVPRWAYLGACLMVSLGTSLSAFWIMVNNSWMQYPTGFSL
TPDGVFVPTDWSAIIFNQAVWTRFPHMIIAAYVTSAFCVAATGAWYMLRGTAVQEGRAMAVMGLRLAAILVPVQLGFGHL
VGDFVHDKQPAKFAAIEGRWNDQQPASEILVAWPDSENERNLFEISVPYLGSVIGSMSLTSKELGIKSFAPQDRPPVAIP
FFAFRIMVGCGLVMLALAWIGSWLSFSERLLKARLFLVATFLSFPLGFIATLTGWFTAEVGRQPWVVYGQLRTAEAATPF
LTSQEVATTFALVAAVYALIFGFGVLYIYRLLRAGPIPAAALSLYGTNPKRPLSIPGASPGVSGAAKTGE

Sequences:

>Translated_470_residues
MELTPLLLSRIQFAFTISFHIIFPAFTIGLAAWLTFLEACHLFTGERIYRRLSDFWLKIFAVAFGLGVVSGIVMAFQFGT
NWSELSRRTGPIQGPLLGYESFTAFALEAAFFGVLMFGRDRVPRWAYLGACLMVSLGTSLSAFWIMVNNSWMQYPTGFSL
TPDGVFVPTDWSAIIFNQAVWTRFPHMIIAAYVTSAFCVAATGAWYMLRGTAVQEGRAMAVMGLRLAAILVPVQLGFGHL
VGDFVHDKQPAKFAAIEGRWNDQQPASEILVAWPDSENERNLFEISVPYLGSVIGSMSLTSKELGIKSFAPQDRPPVAIP
FFAFRIMVGCGLVMLALAWIGSWLSFSERLLKARLFLVATFLSFPLGFIATLTGWFTAEVGRQPWVVYGQLRTAEAATPF
LTSQEVATTFALVAAVYALIFGFGVLYIYRLLRAGPIPAAALSLYGTNPKRPLSIPGASPGVSGAAKTGE
>Mature_470_residues
MELTPLLLSRIQFAFTISFHIIFPAFTIGLAAWLTFLEACHLFTGERIYRRLSDFWLKIFAVAFGLGVVSGIVMAFQFGT
NWSELSRRTGPIQGPLLGYESFTAFALEAAFFGVLMFGRDRVPRWAYLGACLMVSLGTSLSAFWIMVNNSWMQYPTGFSL
TPDGVFVPTDWSAIIFNQAVWTRFPHMIIAAYVTSAFCVAATGAWYMLRGTAVQEGRAMAVMGLRLAAILVPVQLGFGHL
VGDFVHDKQPAKFAAIEGRWNDQQPASEILVAWPDSENERNLFEISVPYLGSVIGSMSLTSKELGIKSFAPQDRPPVAIP
FFAFRIMVGCGLVMLALAWIGSWLSFSERLLKARLFLVATFLSFPLGFIATLTGWFTAEVGRQPWVVYGQLRTAEAATPF
LTSQEVATTFALVAAVYALIFGFGVLYIYRLLRAGPIPAAALSLYGTNPKRPLSIPGASPGVSGAAKTGE

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=500, Percent_Identity=31.2, Blast_Score=231, Evalue=1e-61,
Organism=Escherichia coli, GI1787212, Length=310, Percent_Identity=37.4193548387097, Blast_Score=208, Evalue=6e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51528; Mature: 51528

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELTPLLLSRIQFAFTISFHIIFPAFTIGLAAWLTFLEACHLFTGERIYRRLSDFWLKIF
CCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAFGLGVVSGIVMAFQFGTNWSELSRRTGPIQGPLLGYESFTAFALEAAFFGVLMFGRD
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
RVPRWAYLGACLMVSLGTSLSAFWIMVNNSWMQYPTGFSLTPDGVFVPTDWSAIIFNQAV
CCCHHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCCCCCCCCCEEECCCCHHHHHHHHH
WTRFPHMIIAAYVTSAFCVAATGAWYMLRGTAVQEGRAMAVMGLRLAAILVPVQLGFGHL
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCHHHH
VGDFVHDKQPAKFAAIEGRWNDQQPASEILVAWPDSENERNLFEISVPYLGSVIGSMSLT
HHHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEHHHHHHHHHHCCCC
SKELGIKSFAPQDRPPVAIPFFAFRIMVGCGLVMLALAWIGSWLSFSERLLKARLFLVAT
HHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLSFPLGFIATLTGWFTAEVGRQPWVVYGQLRTAEAATPFLTSQEVATTFALVAAVYALI
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
FGFGVLYIYRLLRAGPIPAAALSLYGTNPKRPLSIPGASPGVSGAAKTGE
HHHHHHHHHHHHHCCCCCHHHHEEECCCCCCCEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MELTPLLLSRIQFAFTISFHIIFPAFTIGLAAWLTFLEACHLFTGERIYRRLSDFWLKIF
CCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAFGLGVVSGIVMAFQFGTNWSELSRRTGPIQGPLLGYESFTAFALEAAFFGVLMFGRD
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
RVPRWAYLGACLMVSLGTSLSAFWIMVNNSWMQYPTGFSLTPDGVFVPTDWSAIIFNQAV
CCCHHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCCCCCCCCCEEECCCCHHHHHHHHH
WTRFPHMIIAAYVTSAFCVAATGAWYMLRGTAVQEGRAMAVMGLRLAAILVPVQLGFGHL
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCHHHH
VGDFVHDKQPAKFAAIEGRWNDQQPASEILVAWPDSENERNLFEISVPYLGSVIGSMSLT
HHHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEHHHHHHHHHHCCCC
SKELGIKSFAPQDRPPVAIPFFAFRIMVGCGLVMLALAWIGSWLSFSERLLKARLFLVAT
HHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLSFPLGFIATLTGWFTAEVGRQPWVVYGQLRTAEAATPFLTSQEVATTFALVAAVYALI
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
FGFGVLYIYRLLRAGPIPAAALSLYGTNPKRPLSIPGASPGVSGAAKTGE
HHHHHHHHHHHHHCCCCCHHHHEEECCCCCCCEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]