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The map label for this gene is araC [H]

Identifier: 158422915

GI number: 158422915

Start: 1442425

End: 1443243

Strand: Reverse

Name: araC [H]

Synonym: AZC_1291

Alternate gene names: 158422915

Gene position: 1443243-1442425 (Counterclockwise)

Preceding gene: 158422919

Following gene: 158422910

Centisome position: 26.88

GC content: 63.86

Gene sequence:

>819_bases
ATGTATGTGGACGTCCGTAGCGATTGGCTTTCCTATGTGGACGAGGTGCCGCGCGCGCTCGTCACCGCCAACGCCGTCGC
CAGTCTCGAGAGCCTGGAACAATCGCCGCGGCACCACCATCAGAAAGCGCAACTGCTTTTCACCGTCCGTGGCGTGATCA
ACTGCGAGGTTGAGGACGCAGTCTGGATCGTGCCGCCGCAATGCGCAGTGTGGATTCCGGGCGGGGTGCCACACACCGTT
TTCGGCTCAGGCGAAGTGGAGTGCATCTCCCTCTTCATCGAACCTCCTGCGACGCCAGAGCTGCCGAACGCATGCTGCAC
GATCACGGTTTCGAGCCTTCTCCGTCACCTGTTGATGCGCGCCAACGAGCTTCCGGAGCTCTATGACGTCGACGGCCCGG
ACGGCCGCATCGTTTCCGTTATCTTCGATGAACTGGCTGCGGCGCCGGTCGAAGACCTCCGCCTTCCAATCCCTGGCGAC
GTGCGCCTGAAGAAGCTCACCGACCTGTTGATCGCAGCGCCTGCGGATCACGCCACCGTCGCAGAGTGGGCTTCCCGCAT
CGCGCTCAGCGAGCGCAGCCTGAACCGTATGCTGGCGGAGCAGGTGGGCATGAGCTTCGGCCGCTGGCGCCGGCAATTGC
ACGTGGTCCTCGCCTTGCGGCGTCTGAGCGCCGGCCAGACCGTCCAGGCCGTCGCGATGGATCTCGGCTATGAAAGCGCC
AGCAGCTTCGTGACCATGTTCCGCAAGATGGTCGGCAAGCCGCCGAGCCGCTACCTGATGGAGCGGCTTGACCTGCCCCT
ATTGAGTGGTCCGGCTTGA

Upstream 100 bases:

>100_bases
TCTAGCTGAATGAAATAAGCCCGCCGACGAATGGCGTCATTGCGCAATCCCGCCCCTACATGTTTCAATCCAGCCAAAAT
CGAAAACGCCGGGGCCTTCG

Downstream 100 bases:

>100_bases
GTCTAATGCATTGTGGGCCTGTTGGGCGCATTTGATGTTGGCGGCACCTGCGGCACGATAACGGCCGGTGCCGGAGGCTT
GTAGCCGAGCGCGGAGTGTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MYVDVRSDWLSYVDEVPRALVTANAVASLESLEQSPRHHHQKAQLLFTVRGVINCEVEDAVWIVPPQCAVWIPGGVPHTV
FGSGEVECISLFIEPPATPELPNACCTITVSSLLRHLLMRANELPELYDVDGPDGRIVSVIFDELAAAPVEDLRLPIPGD
VRLKKLTDLLIAAPADHATVAEWASRIALSERSLNRMLAEQVGMSFGRWRRQLHVVLALRRLSAGQTVQAVAMDLGYESA
SSFVTMFRKMVGKPPSRYLMERLDLPLLSGPA

Sequences:

>Translated_272_residues
MYVDVRSDWLSYVDEVPRALVTANAVASLESLEQSPRHHHQKAQLLFTVRGVINCEVEDAVWIVPPQCAVWIPGGVPHTV
FGSGEVECISLFIEPPATPELPNACCTITVSSLLRHLLMRANELPELYDVDGPDGRIVSVIFDELAAAPVEDLRLPIPGD
VRLKKLTDLLIAAPADHATVAEWASRIALSERSLNRMLAEQVGMSFGRWRRQLHVVLALRRLSAGQTVQAVAMDLGYESA
SSFVTMFRKMVGKPPSRYLMERLDLPLLSGPA
>Mature_272_residues
MYVDVRSDWLSYVDEVPRALVTANAVASLESLEQSPRHHHQKAQLLFTVRGVINCEVEDAVWIVPPQCAVWIPGGVPHTV
FGSGEVECISLFIEPPATPELPNACCTITVSSLLRHLLMRANELPELYDVDGPDGRIVSVIFDELAAAPVEDLRLPIPGD
VRLKKLTDLLIAAPADHATVAEWASRIALSERSLNRMLAEQVGMSFGRWRRQLHVVLALRRLSAGQTVQAVAMDLGYESA
SSFVTMFRKMVGKPPSRYLMERLDLPLLSGPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=225, Percent_Identity=40, Blast_Score=186, Evalue=1e-48,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29996; Mature: 29996

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVDVRSDWLSYVDEVPRALVTANAVASLESLEQSPRHHHQKAQLLFTVRGVINCEVEDA
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHEEEEECCE
VWIVPPQCAVWIPGGVPHTVFGSGEVECISLFIEPPATPELPNACCTITVSSLLRHLLMR
EEEECCCCEEEECCCCCCCEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
ANELPELYDVDGPDGRIVSVIFDELAAAPVEDLRLPIPGDVRLKKLTDLLIAAPADHATV
HHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHH
AEWASRIALSERSLNRMLAEQVGMSFGRWRRQLHVVLALRRLSAGQTVQAVAMDLGYESA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHH
SSFVTMFRKMVGKPPSRYLMERLDLPLLSGPA
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MYVDVRSDWLSYVDEVPRALVTANAVASLESLEQSPRHHHQKAQLLFTVRGVINCEVEDA
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHEEEEECCE
VWIVPPQCAVWIPGGVPHTVFGSGEVECISLFIEPPATPELPNACCTITVSSLLRHLLMR
EEEECCCCEEEECCCCCCCEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
ANELPELYDVDGPDGRIVSVIFDELAAAPVEDLRLPIPGDVRLKKLTDLLIAAPADHATV
HHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHH
AEWASRIALSERSLNRMLAEQVGMSFGRWRRQLHVVLALRRLSAGQTVQAVAMDLGYESA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHH
SSFVTMFRKMVGKPPSRYLMERLDLPLLSGPA
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]