Click here to switch to the map view.

The map label for this gene is nusB [H]

Identifier: 158422890

GI number: 158422890

Start: 1416006

End: 1416419

Strand: Direct

Name: nusB [H]

Synonym: AZC_1266

Alternate gene names: 158422890

Gene position: 1416006-1416419 (Clockwise)

Preceding gene: 158422889

Following gene: 158422891

Centisome position: 26.37

GC content: 69.32

Gene sequence:

>414_bases
GTGCAGGCGCTCTACCAGATGGACATCGCCGGCACGCCGGTGAACGAGATCCTCGCGGAGTTCGAGACCCACTGGCTCGG
CCGCGAGGTCGAGGGCGACGTCTATCCGGAAGCCGACCGCGCCCTGTTCCGCACGGTGGTCGAAGGCGTGCTCGCCCAGC
AGCGCACCATCGACCCCATGGTGGACGAGGCGCTCACCGCCGGCTGGCCGCTGCGCCGGGTGGAACTGGTGATGCGCGCC
ACCCTGCGCGCCGGCGCCTTCGAGCTGATCGGCAAGCCGGAAACGCCCGCGCGTGTGGTGATCGCCGAATATGTGAACGT
CGCCGCCGCCTTCTTCGAACGCGAGGAGACCGGCATGGTGAACGCGGTTCTGGATTCCCTCGCCCGCAAGCTGCGCGCCG
AGGAGTTCGCCTGA

Upstream 100 bases:

>100_bases
GCCGAAGCCGCTTTGAGCCTGGTGCGCCTGAAGCGCCGGGGCCTCAAATGAGCGATCAGGTCTCCAAGCCCATGCGCAAG
AGCGCGGCCCGTCTCGCGGC

Downstream 100 bases:

>100_bases
GGCGCCCCTTCGCCTTCGGTCGTGCCCGGACCGGATCCGGGCATCCAGGGAGGCGGGGACATGCGCCCGGCGTCCGGTCC
ATTCTTTTCTGACGCGAGGA

Product: antitermination protein

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MQALYQMDIAGTPVNEILAEFETHWLGREVEGDVYPEADRALFRTVVEGVLAQQRTIDPMVDEALTAGWPLRRVELVMRA
TLRAGAFELIGKPETPARVVIAEYVNVAAAFFEREETGMVNAVLDSLARKLRAEEFA

Sequences:

>Translated_137_residues
MQALYQMDIAGTPVNEILAEFETHWLGREVEGDVYPEADRALFRTVVEGVLAQQRTIDPMVDEALTAGWPLRRVELVMRA
TLRAGAFELIGKPETPARVVIAEYVNVAAAFFEREETGMVNAVLDSLARKLRAEEFA
>Mature_137_residues
MQALYQMDIAGTPVNEILAEFETHWLGREVEGDVYPEADRALFRTVVEGVLAQQRTIDPMVDEALTAGWPLRRVELVMRA
TLRAGAFELIGKPETPARVVIAEYVNVAAAFFEREETGMVNAVLDSLARKLRAEEFA

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 15308; Mature: 15308

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALYQMDIAGTPVNEILAEFETHWLGREVEGDVYPEADRALFRTVVEGVLAQQRTIDPM
CCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
VDEALTAGWPLRRVELVMRATLRAGAFELIGKPETPARVVIAEYVNVAAAFFEREETGMV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
NAVLDSLARKLRAEEFA
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQALYQMDIAGTPVNEILAEFETHWLGREVEGDVYPEADRALFRTVVEGVLAQQRTIDPM
CCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
VDEALTAGWPLRRVELVMRATLRAGAFELIGKPETPARVVIAEYVNVAAAFFEREETGMV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
NAVLDSLARKLRAEEFA
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]