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The map label for this gene is cph2 [H]

Identifier: 158422846

GI number: 158422846

Start: 1369534

End: 1371042

Strand: Direct

Name: cph2 [H]

Synonym: AZC_1222

Alternate gene names: 158422846

Gene position: 1369534-1371042 (Clockwise)

Preceding gene: 158422845

Following gene: 158422848

Centisome position: 25.5

GC content: 66.8

Gene sequence:

>1509_bases
GTGTGGTGGGCCCGTGCCGTATGGCCATTTGGGGGGAAATTGCGGCCGATGACCGATACTTGGGACCAGTTTTCTCGCCG
GCTCGCTCTGGTTTACGCTCTGGTGGCGTTGGTTGTACTCGTCCTCTATCTGGCGTTCGACTTTCAGCGGTCCTGGTCCC
GTTCCGTTTCGAATCTGCGCGAGCAGGCCGGCGCTGCCCTATCCTGGGCCGAGCGCGGGATGGATGCCGCCTCCGAGGCC
ATGTCCTCGGCCGCTACGGCCGGCTCCAGAGCCTGCGTCGCCGGGGCCGTGGAGCCCCGCGTGCTCTCCCACATGCTCAA
CGTGCCGCTCGACCGCGTGACCATCGCGACCGGCGGGCGCGTGCTGTGTGAATGGACGGCGCCCCAATCCACGCTCACGG
CCTGCAGCACCGGCCAGCAGGCGGCAATGGCCATTTCGCGCACGCAGGATGATGTCACGGCGACCGCCCGCATCTATCCC
GCCTGCATGCTCGCGCCCTTCGCGCTCTCGGTCGACGGCGTGGGGCTGGGCCTGCGGGAGAAACGCGAGCGCCGGGCCGC
GGGTGAGCCGGATGCCCTGCTCACGCTGACCTCGGCGCGGTGGCCCGTGCAACTGGACGTGAGCGCTCCCCCTTACTGGC
TCCTGCGCCGCTGGATGGCCGATCTGCCGCTGCAGATCGGCTTTTTTGCACTCGTGGGCCTTGCCATCTATTTCGGCCCG
CTCGCCGCGCTGCGCCGCCGGCTCTCCATCGAGGGGCAGGTGCGCACGGCGCTGAAGCGGGGCGAGTTCTTCCTCACGTA
TCTGCCGACCATCGAGGTCAACACCGGCCATTGGCTCGGGGTGGAGGCGCTGATGCGCTGGCGGCACAGCCGCCATGGCC
TGCTTCAGCCGGCGGCTTTCATTCCCTGGATCGAGCGCAGCCCGCTGATCCACGACACCACCAGCTGGGTGTTGCGGCAG
GCGGCGAGCGATCTCGCCCGCATGAATGAACTCCATCACGAGCTTTATGTCGGCATCAACCTGCCGCCGAACCAGCTCAG
CGACGAGCGGGTGGTGGACGCGGCCCTGGATGCCTTCGGCAACGACCAACTGTGCCTGTGCCGCGTGATGTTCGAGCTCA
CCGAGCGCGAGACGACGGATTATGCCTCCCCCGAGGTGCAGCGCGTGGTGGCGCGGCTGCGCGAGCGGGGAGCCCAGTTC
GCGCTGGACGATTTCGGCATCGGCTTCTCCAATCTGGCGTCGCTGGCCCTGCTGGAGATCGATTTCATCAAGGTGGACAA
GAGCTTCATTCAGGAACTGGAGCGGCGGGGTACGGACCCGAACATTGTCGACTCCATCGTCCATGTGGCCCGCGAGTTCG
GTGTCGGCATCATCGCCGAGGGCATCGAGACGGAGCGCCAGCTCGATCGTATCCGGCGCATCGGCATCCGCATGGCGCAG
GGCTTCCTTTTCTTCCGTCCCATGGAGGTGGAAGCGACCCTCGACCAACTGCGGCTCCAGACGCAATAG

Upstream 100 bases:

>100_bases
GTGATCTATTGCGCGGATTGTAATCTACGACGAATGCGCCGCCGAACCTCTGTGCGCGCACGCGTTAACCTCACGGTGCT
TTCGGATTTGCCGCCGTTAC

Downstream 100 bases:

>100_bases
CGTACGGGTCGCCGCTCAAGGCGCGTGCCACCAGGTCTCCGGCAGGGTCCCGTAGAGTGAAACGGCGGTTGGCCGCTCGA
TGCGCGTCCAGCGCGCCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MWWARAVWPFGGKLRPMTDTWDQFSRRLALVYALVALVVLVLYLAFDFQRSWSRSVSNLREQAGAALSWAERGMDAASEA
MSSAATAGSRACVAGAVEPRVLSHMLNVPLDRVTIATGGRVLCEWTAPQSTLTACSTGQQAAMAISRTQDDVTATARIYP
ACMLAPFALSVDGVGLGLREKRERRAAGEPDALLTLTSARWPVQLDVSAPPYWLLRRWMADLPLQIGFFALVGLAIYFGP
LAALRRRLSIEGQVRTALKRGEFFLTYLPTIEVNTGHWLGVEALMRWRHSRHGLLQPAAFIPWIERSPLIHDTTSWVLRQ
AASDLARMNELHHELYVGINLPPNQLSDERVVDAALDAFGNDQLCLCRVMFELTERETTDYASPEVQRVVARLRERGAQF
ALDDFGIGFSNLASLALLEIDFIKVDKSFIQELERRGTDPNIVDSIVHVAREFGVGIIAEGIETERQLDRIRRIGIRMAQ
GFLFFRPMEVEATLDQLRLQTQ

Sequences:

>Translated_502_residues
MWWARAVWPFGGKLRPMTDTWDQFSRRLALVYALVALVVLVLYLAFDFQRSWSRSVSNLREQAGAALSWAERGMDAASEA
MSSAATAGSRACVAGAVEPRVLSHMLNVPLDRVTIATGGRVLCEWTAPQSTLTACSTGQQAAMAISRTQDDVTATARIYP
ACMLAPFALSVDGVGLGLREKRERRAAGEPDALLTLTSARWPVQLDVSAPPYWLLRRWMADLPLQIGFFALVGLAIYFGP
LAALRRRLSIEGQVRTALKRGEFFLTYLPTIEVNTGHWLGVEALMRWRHSRHGLLQPAAFIPWIERSPLIHDTTSWVLRQ
AASDLARMNELHHELYVGINLPPNQLSDERVVDAALDAFGNDQLCLCRVMFELTERETTDYASPEVQRVVARLRERGAQF
ALDDFGIGFSNLASLALLEIDFIKVDKSFIQELERRGTDPNIVDSIVHVAREFGVGIIAEGIETERQLDRIRRIGIRMAQ
GFLFFRPMEVEATLDQLRLQTQ
>Mature_502_residues
MWWARAVWPFGGKLRPMTDTWDQFSRRLALVYALVALVVLVLYLAFDFQRSWSRSVSNLREQAGAALSWAERGMDAASEA
MSSAATAGSRACVAGAVEPRVLSHMLNVPLDRVTIATGGRVLCEWTAPQSTLTACSTGQQAAMAISRTQDDVTATARIYP
ACMLAPFALSVDGVGLGLREKRERRAAGEPDALLTLTSARWPVQLDVSAPPYWLLRRWMADLPLQIGFFALVGLAIYFGP
LAALRRRLSIEGQVRTALKRGEFFLTYLPTIEVNTGHWLGVEALMRWRHSRHGLLQPAAFIPWIERSPLIHDTTSWVLRQ
AASDLARMNELHHELYVGINLPPNQLSDERVVDAALDAFGNDQLCLCRVMFELTERETTDYASPEVQRVVARLRERGAQF
ALDDFGIGFSNLASLALLEIDFIKVDKSFIQELERRGTDPNIVDSIVHVAREFGVGIIAEGIETERQLDRIRRIGIRMAQ
GFLFFRPMEVEATLDQLRLQTQ

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=32.7800829875519, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081845, Length=295, Percent_Identity=32.2033898305085, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI87081743, Length=288, Percent_Identity=30.5555555555556, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=33.8912133891213, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI87081921, Length=267, Percent_Identity=31.0861423220974, Blast_Score=128, Evalue=9e-31,
Organism=Escherichia coli, GI87081980, Length=392, Percent_Identity=26.2755102040816, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787541, Length=242, Percent_Identity=31.8181818181818, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1788502, Length=263, Percent_Identity=28.5171102661597, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI226510982, Length=261, Percent_Identity=30.6513409961686, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1787055, Length=257, Percent_Identity=28.7937743190661, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788849, Length=256, Percent_Identity=26.5625, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=26.0330578512397, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 56178; Mature: 56178

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWWARAVWPFGGKLRPMTDTWDQFSRRLALVYALVALVVLVLYLAFDFQRSWSRSVSNLR
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQAGAALSWAERGMDAASEAMSSAATAGSRACVAGAVEPRVLSHMLNVPLDRVTIATGGR
HHHCHHHHHHHHCCHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCHHEEEEECCCE
VLCEWTAPQSTLTACSTGQQAAMAISRTQDDVTATARIYPACMLAPFALSVDGVGLGLRE
EEEEECCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEECCCCCCHHH
KRERRAAGEPDALLTLTSARWPVQLDVSAPPYWLLRRWMADLPLQIGFFALVGLAIYFGP
HHHHHCCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LAALRRRLSIEGQVRTALKRGEFFLTYLPTIEVNTGHWLGVEALMRWRHSRHGLLQPAAF
HHHHHHHHCCCHHHHHHHHCCCEEEEEECEEEECCCCCHHHHHHHHHHHHCCCCCCCHHH
IPWIERSPLIHDTTSWVLRQAASDLARMNELHHELYVGINLPPNQLSDERVVDAALDAFG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCC
NDQLCLCRVMFELTERETTDYASPEVQRVVARLRERGAQFALDDFGIGFSNLASLALLEI
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEHHHCCCCHHHHHHHHHHHH
DFIKVDKSFIQELERRGTDPNIVDSIVHVAREFGVGIIAEGIETERQLDRIRRIGIRMAQ
HHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHHHC
GFLFFRPMEVEATLDQLRLQTQ
CCCEEECCHHHHHHHHHHCCCC
>Mature Secondary Structure
MWWARAVWPFGGKLRPMTDTWDQFSRRLALVYALVALVVLVLYLAFDFQRSWSRSVSNLR
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQAGAALSWAERGMDAASEAMSSAATAGSRACVAGAVEPRVLSHMLNVPLDRVTIATGGR
HHHCHHHHHHHHCCHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCHHEEEEECCCE
VLCEWTAPQSTLTACSTGQQAAMAISRTQDDVTATARIYPACMLAPFALSVDGVGLGLRE
EEEEECCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEECCCCCCHHH
KRERRAAGEPDALLTLTSARWPVQLDVSAPPYWLLRRWMADLPLQIGFFALVGLAIYFGP
HHHHHCCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LAALRRRLSIEGQVRTALKRGEFFLTYLPTIEVNTGHWLGVEALMRWRHSRHGLLQPAAF
HHHHHHHHCCCHHHHHHHHCCCEEEEEECEEEECCCCCHHHHHHHHHHHHCCCCCCCHHH
IPWIERSPLIHDTTSWVLRQAASDLARMNELHHELYVGINLPPNQLSDERVVDAALDAFG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCC
NDQLCLCRVMFELTERETTDYASPEVQRVVARLRERGAQFALDDFGIGFSNLASLALLEI
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEHHHCCCCHHHHHHHHHHHH
DFIKVDKSFIQELERRGTDPNIVDSIVHVAREFGVGIIAEGIETERQLDRIRRIGIRMAQ
HHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHHHC
GFLFFRPMEVEATLDQLRLQTQ
CCCEEECCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]