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The map label for this gene is araC [H]

Identifier: 158422799

GI number: 158422799

Start: 1311942

End: 1312952

Strand: Direct

Name: araC [H]

Synonym: AZC_1175

Alternate gene names: 158422799

Gene position: 1311942-1312952 (Clockwise)

Preceding gene: 158422798

Following gene: 158422800

Centisome position: 24.43

GC content: 71.81

Gene sequence:

>1011_bases
ATGGCCCGCCCCCCGACCCCCCACCTTGCCGCCGTGTCCGCGCCCGGCACTTCACCCCTCGGCGGGGAGATGGCGCAGGT
GCGGCGCATCGGCTTCCTCACCTTGCCCAATTATTCCATGATCGCGCTCGCCAATGCGCTCGAAGCCTGCCGCATGGCCA
ACTATGTGAGCGGGCGCGACATCTATGGCTGGGAGGTGGTGACGCTGGACGGCGCCCCCGTGCCCGCCAGCAACGGTCTC
TCGCTGAGCCCCACCCGCCGCCTCGCTGATGCGGGCGACCTTGACCTCCTGATGGTGTGCGGCGGCATCGACGTGCGCCA
TGCGGTGGGCCGCGCGACCCGCGAGGCCCTGCGCCGGGCCGCCCGCAAGGGCATGGCGCTGGGGGCGCTGTGCACCGGTA
CCTTCGCGCTGGCGGAAGCGGGTCTGCTGAACGGCTATCGTTGTGCCATCCACTGGGAGAACCTCGCTGCCATTCGCGAG
GAATTTCCCGACGTCGCCTTTCAGGAAGACGCCTTCGTCATCGACCGCGACCGGCTGACCTGCACCGGCGGCGTCGCGCC
GCTCGACATGATGCTGGTGCTGATCGCCGCCGCGCTCGGCGCCCGCACGGCCGGGGCAGTGGCGGACCAGTTCATCGTCC
GTCGGCCGGGCGCAACGGAACGGCAGAAGGCGCTGGTGGCGCCGGACGTCGCGGCGCGCATTCCGGTGCTGGCGAAGGCG
GTGGAGGTGATGGCGCGCCATCTTGAGCGCCCGCTCTCCACGGGGGAGGTGGCCGCCGCCGCAAACCTCTCCCAGCGCCA
GCTGGAGCGTCTGTTCCAGCGGCATCTCTCCGCCTCGCCCGCCGCCTTCTATCTGGACCTGCGCCTTGCCCGCGCCCGCG
AGCTGCTGCGCCTTTCGCCCTTGCCGGTGACGGACGTGGCGCTCGCCTGCGGCTTCCAGTCCGCCGCGCATTTCTCCGTC
GCCTACGGGCGGCGCTTTGGCCATCCGCCCCGCGCGGAGCGCGCCGCCTGA

Upstream 100 bases:

>100_bases
AAGCACGGCGGCGGCATCCGCCAGCGGGAGATCGATGCGGGCATGGTGCTGATCTGCTGTGCCCGTCCCACCAGCGATCT
CGTGATCGAGCGCTGACGCC

Downstream 100 bases:

>100_bases
CATTGCCCGACCCGCTTGCGCGATTGGAGCCGCCCGATGATCGCCAATGCCGACGCCTTGCTGAAGCCGCTGACCCTGAA
GGGCCTCACCATCCGCAACC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MARPPTPHLAAVSAPGTSPLGGEMAQVRRIGFLTLPNYSMIALANALEACRMANYVSGRDIYGWEVVTLDGAPVPASNGL
SLSPTRRLADAGDLDLLMVCGGIDVRHAVGRATREALRRAARKGMALGALCTGTFALAEAGLLNGYRCAIHWENLAAIRE
EFPDVAFQEDAFVIDRDRLTCTGGVAPLDMMLVLIAAALGARTAGAVADQFIVRRPGATERQKALVAPDVAARIPVLAKA
VEVMARHLERPLSTGEVAAAANLSQRQLERLFQRHLSASPAAFYLDLRLARARELLRLSPLPVTDVALACGFQSAAHFSV
AYGRRFGHPPRAERAA

Sequences:

>Translated_336_residues
MARPPTPHLAAVSAPGTSPLGGEMAQVRRIGFLTLPNYSMIALANALEACRMANYVSGRDIYGWEVVTLDGAPVPASNGL
SLSPTRRLADAGDLDLLMVCGGIDVRHAVGRATREALRRAARKGMALGALCTGTFALAEAGLLNGYRCAIHWENLAAIRE
EFPDVAFQEDAFVIDRDRLTCTGGVAPLDMMLVLIAAALGARTAGAVADQFIVRRPGATERQKALVAPDVAARIPVLAKA
VEVMARHLERPLSTGEVAAAANLSQRQLERLFQRHLSASPAAFYLDLRLARARELLRLSPLPVTDVALACGFQSAAHFSV
AYGRRFGHPPRAERAA
>Mature_335_residues
ARPPTPHLAAVSAPGTSPLGGEMAQVRRIGFLTLPNYSMIALANALEACRMANYVSGRDIYGWEVVTLDGAPVPASNGLS
LSPTRRLADAGDLDLLMVCGGIDVRHAVGRATREALRRAARKGMALGALCTGTFALAEAGLLNGYRCAIHWENLAAIREE
FPDVAFQEDAFVIDRDRLTCTGGVAPLDMMLVLIAAALGARTAGAVADQFIVRRPGATERQKALVAPDVAARIPVLAKAV
EVMARHLERPLSTGEVAAAANLSQRQLERLFQRHLSASPAAFYLDLRLARARELLRLSPLPVTDVALACGFQSAAHFSVA
YGRRFGHPPRAERAA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35833; Mature: 35702

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPPTPHLAAVSAPGTSPLGGEMAQVRRIGFLTLPNYSMIALANALEACRMANYVSGRD
CCCCCCCCEEEEECCCCCCCCHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHCCCCCC
IYGWEVVTLDGAPVPASNGLSLSPTRRLADAGDLDLLMVCGGIDVRHAVGRATREALRRA
CCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
ARKGMALGALCTGTFALAEAGLLNGYRCAIHWENLAAIREEFPDVAFQEDAFVIDRDRLT
HHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCEEEECCCEE
CTGGVAPLDMMLVLIAAALGARTAGAVADQFIVRRPGATERQKALVAPDVAARIPVLAKA
ECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHEECCCCHHHHHHHHHHH
VEVMARHLERPLSTGEVAAAANLSQRQLERLFQRHLSASPAAFYLDLRLARARELLRLSP
HHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCC
LPVTDVALACGFQSAAHFSVAYGRRFGHPPRAERAA
CCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ARPPTPHLAAVSAPGTSPLGGEMAQVRRIGFLTLPNYSMIALANALEACRMANYVSGRD
CCCCCCCEEEEECCCCCCCCHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHCCCCCC
IYGWEVVTLDGAPVPASNGLSLSPTRRLADAGDLDLLMVCGGIDVRHAVGRATREALRRA
CCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
ARKGMALGALCTGTFALAEAGLLNGYRCAIHWENLAAIREEFPDVAFQEDAFVIDRDRLT
HHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCEEEECCCEE
CTGGVAPLDMMLVLIAAALGARTAGAVADQFIVRRPGATERQKALVAPDVAARIPVLAKA
ECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHEECCCCHHHHHHHHHHH
VEVMARHLERPLSTGEVAAAANLSQRQLERLFQRHLSASPAAFYLDLRLARARELLRLSP
HHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCC
LPVTDVALACGFQSAAHFSVAYGRRFGHPPRAERAA
CCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]