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The map label for this gene is soxB [H]

Identifier: 158422796

GI number: 158422796

Start: 1308070

End: 1309323

Strand: Reverse

Name: soxB [H]

Synonym: AZC_1172

Alternate gene names: 158422796

Gene position: 1309323-1308070 (Counterclockwise)

Preceding gene: 158422804

Following gene: 158422795

Centisome position: 24.38

GC content: 66.59

Gene sequence:

>1254_bases
ATGCGGCGCTTTTCACTCGGCTCCCTCCTCTCGGAGGCCTTGAACGCCCATCAGGGCTGGCCGCGCCAGTGGCGCAAGGC
CACGCCCAAGGCCGCCTATGACGCCATCATCATCGGTGGCGGCGCGCACGGCCTCGGCGCGGCCTATTATCTGGCCAAGG
AGCACGGCCTCACCAATATCGCCGTGCTGGAGAAGGGATGGATCGGTGGCGGCAATTCGGGCCGCAACACCACCATCATC
CGCTCCAACTATCTCTATGACGAAAGCGCCGCGCTCTATGAGCATGCGGTGAAGCTGTGGGAAGGGCTCTCCGAGGAGCT
CAACTACAACGTCATGTTCTCCCAGCGCGGCGTGCTTATGCTCGCGCACAATGTGCACGACGTGCAGAGCTTCAAGCGGC
ACGTCTATGCCAACCGCCTCAACGGCATCGACAATGAGTGGCTGACCCCGCGCGAGGCCAAGGCATTCTGCCCGCCGCTC
AACATCTCGCCCGACATCCGCTATCCGGTGATGGGCGCCGCCCTCCAGCGGCGCGGCGGCACCGCCCGCCATGACGCCGT
GGTGTGGGGCTATGCCCGCGGCGCCGATGCGCGGGGCGTGGACATCATCGAGAATTGCGAGGTCACCGCCATCCATCGCG
GCCCGGACGGGGCGGTGACGGGGGTCGATACGACGCGCGGCAGCATCAAGACGAAGAAGATCGGCGTCTCCGCTGCCGGC
CACACCTCCATGGTGATGGCCATGGCGGACGTGCGCATGCCGCTGGAGAGCTTCCCCCTTCAGGCCCTCGTCTCCGAGCC
GGTGAAGCCCTGCTTCCCCTGCGTGCTCATGTCCAATGCGGTGCACGCCTACATCTCGCAGTCGGACAAGGGCGAACTCG
TCATCGGCGCCGGCACGGACCAGTATGTGTCCTACAGCCAGCAGGGTGGCCTGCACATCACCACCCACACGCTGGATGCC
ATCTGCGAACTCTTCCCACAGTTCACGCGCATGAAGATGATGCGCTCCTGGGGCGGCATCGTGGACGTGACGCCGGACCG
CTCGCCCATCATCGGCAAGACGCCGGTGCAGGGCCTCTATGTGAACTGCGGCTGGGGCACCGGCGGCTTCAAGGCGAGCC
CCGGCTCGGCCCATGTCTTCGCCCACACCATCGCGCGCGACGAACCCCATCCCATCAACGCGCCCTTCACGCTGGACCGC
TTCCGCACCGGCCGCCTCATCGACGAGGCGGCGGCGGCGGCGGTGGCGCACTGA

Upstream 100 bases:

>100_bases
CGACAGATGTCGGATTTGTTCCAGAGCGAAGTCGCAAAGACACGAGATGGCTGCCCGCGGCTGGAGCATCCTGCGCCGAG
AACAGGGGAACATCAGGCCC

Downstream 100 bases:

>100_bases
GGCCCGCCATGCTGCTCGTCACCTGCCCCTATTGCGGCGCCCGCCCGGAAATCGAATTCCACTGCGGCGGCGAGGCCCAT
ATCGCCCGGCCCGAAACGCC

Product: sarcosine oxidase subunit beta

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MRRFSLGSLLSEALNAHQGWPRQWRKATPKAAYDAIIIGGGAHGLGAAYYLAKEHGLTNIAVLEKGWIGGGNSGRNTTII
RSNYLYDESAALYEHAVKLWEGLSEELNYNVMFSQRGVLMLAHNVHDVQSFKRHVYANRLNGIDNEWLTPREAKAFCPPL
NISPDIRYPVMGAALQRRGGTARHDAVVWGYARGADARGVDIIENCEVTAIHRGPDGAVTGVDTTRGSIKTKKIGVSAAG
HTSMVMAMADVRMPLESFPLQALVSEPVKPCFPCVLMSNAVHAYISQSDKGELVIGAGTDQYVSYSQQGGLHITTHTLDA
ICELFPQFTRMKMMRSWGGIVDVTPDRSPIIGKTPVQGLYVNCGWGTGGFKASPGSAHVFAHTIARDEPHPINAPFTLDR
FRTGRLIDEAAAAAVAH

Sequences:

>Translated_417_residues
MRRFSLGSLLSEALNAHQGWPRQWRKATPKAAYDAIIIGGGAHGLGAAYYLAKEHGLTNIAVLEKGWIGGGNSGRNTTII
RSNYLYDESAALYEHAVKLWEGLSEELNYNVMFSQRGVLMLAHNVHDVQSFKRHVYANRLNGIDNEWLTPREAKAFCPPL
NISPDIRYPVMGAALQRRGGTARHDAVVWGYARGADARGVDIIENCEVTAIHRGPDGAVTGVDTTRGSIKTKKIGVSAAG
HTSMVMAMADVRMPLESFPLQALVSEPVKPCFPCVLMSNAVHAYISQSDKGELVIGAGTDQYVSYSQQGGLHITTHTLDA
ICELFPQFTRMKMMRSWGGIVDVTPDRSPIIGKTPVQGLYVNCGWGTGGFKASPGSAHVFAHTIARDEPHPINAPFTLDR
FRTGRLIDEAAAAAVAH
>Mature_417_residues
MRRFSLGSLLSEALNAHQGWPRQWRKATPKAAYDAIIIGGGAHGLGAAYYLAKEHGLTNIAVLEKGWIGGGNSGRNTTII
RSNYLYDESAALYEHAVKLWEGLSEELNYNVMFSQRGVLMLAHNVHDVQSFKRHVYANRLNGIDNEWLTPREAKAFCPPL
NISPDIRYPVMGAALQRRGGTARHDAVVWGYARGADARGVDIIENCEVTAIHRGPDGAVTGVDTTRGSIKTKKIGVSAAG
HTSMVMAMADVRMPLESFPLQALVSEPVKPCFPCVLMSNAVHAYISQSDKGELVIGAGTDQYVSYSQQGGLHITTHTLDA
ICELFPQFTRMKMMRSWGGIVDVTPDRSPIIGKTPVQGLYVNCGWGTGGFKASPGSAHVFAHTIARDEPHPINAPFTLDR
FRTGRLIDEAAAAAVAH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=387, Percent_Identity=25.8397932816537, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI21361378, Length=387, Percent_Identity=25.8397932816537, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI194306651, Length=393, Percent_Identity=22.64631043257, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI20130091, Length=411, Percent_Identity=23.3576642335766, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 45288; Mature: 45288

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS00094 C5_MTASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFSLGSLLSEALNAHQGWPRQWRKATPKAAYDAIIIGGGAHGLGAAYYLAKEHGLTNI
CCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEECCCCCCHHHHEEEHHHCCCCEE
AVLEKGWIGGGNSGRNTTIIRSNYLYDESAALYEHAVKLWEGLSEELNYNVMFSQRGVLM
EEEECCCCCCCCCCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEE
LAHNVHDVQSFKRHVYANRLNGIDNEWLTPREAKAFCPPLNISPDIRYPVMGAALQRRGG
EECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHCCC
TARHDAVVWGYARGADARGVDIIENCEVTAIHRGPDGAVTGVDTTRGSIKTKKIGVSAAG
CCCCCEEEEEECCCCCCCCCEEECCCCEEEEEECCCCCEECCCCCCCCEEEEEEEEECCC
HTSMVMAMADVRMPLESFPLQALVSEPVKPCFPCVLMSNAVHAYISQSDKGELVIGAGTD
CHHHHHHHHHHHCCHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCH
QYVSYSQQGGLHITTHTLDAICELFPQFTRMKMMRSWGGIVDVTPDRSPIIGKTPVQGLY
HHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEE
VNCGWGTGGFKASPGSAHVFAHTIARDEPHPINAPFTLDRFRTGRLIDEAAAAAVAH
EEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MRRFSLGSLLSEALNAHQGWPRQWRKATPKAAYDAIIIGGGAHGLGAAYYLAKEHGLTNI
CCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEECCCCCCHHHHEEEHHHCCCCEE
AVLEKGWIGGGNSGRNTTIIRSNYLYDESAALYEHAVKLWEGLSEELNYNVMFSQRGVLM
EEEECCCCCCCCCCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEE
LAHNVHDVQSFKRHVYANRLNGIDNEWLTPREAKAFCPPLNISPDIRYPVMGAALQRRGG
EECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHCCC
TARHDAVVWGYARGADARGVDIIENCEVTAIHRGPDGAVTGVDTTRGSIKTKKIGVSAAG
CCCCCEEEEEECCCCCCCCCEEECCCCEEEEEECCCCCEECCCCCCCCEEEEEEEEECCC
HTSMVMAMADVRMPLESFPLQALVSEPVKPCFPCVLMSNAVHAYISQSDKGELVIGAGTD
CHHHHHHHHHHHCCHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCH
QYVSYSQQGGLHITTHTLDAICELFPQFTRMKMMRSWGGIVDVTPDRSPIIGKTPVQGLY
HHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEE
VNCGWGTGGFKASPGSAHVFAHTIARDEPHPINAPFTLDRFRTGRLIDEAAAAAVAH
EEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7543100; 1939012; 3202887; 7692961 [H]