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The map label for this gene is hypD [H]

Identifier: 158422235

GI number: 158422235

Start: 676563

End: 677684

Strand: Direct

Name: hypD [H]

Synonym: AZC_0611

Alternate gene names: 158422235

Gene position: 676563-677684 (Clockwise)

Preceding gene: 158422234

Following gene: 158422236

Centisome position: 12.6

GC content: 67.83

Gene sequence:

>1122_bases
ATGCGTTTCGTCGATGAATTCCGCGATCCGGCCCTCGCCGCCGCGCTGATCCGGGAAATCGGGACCATCTGCGCCACCCT
CGGGCGCGCGAAGGATGATCCCGTCACCGTCATGGAGGTGTGTGGCGGGCACACCCACGCCATCTTCCGCTATGGGCTCG
AAGGCCTGTTGCCCGACCTGATCGAATTCGTGCACGGCCCCGGCTGCCCGGTCTGCGTTCTGCCCATGGGCCGCGTGGAC
GATTGCGTCGCCATCGCCGAGCGGCCCGAAGTGATCTTCGCCACCTTCGGCGATGCCATGCGGGTTCCCGGCTCCCGCAA
GAGCCTGCTTCAGGCCAAGGCGGACGGCGCCGACGTGCGCATGGTCTATTCGCCCCTCGACGCACTGGAACTCGCCCGCC
GCAATCCCGACCGGGAGGTGGTGTTCTTCGGCCTCGGCTTCGAGACCACCATGCCCTCTACCGCGCTCACCGTGCAGCGG
GCGGCGCGCGAGCGCATCACCAACTTCTCCCTCTTCTGCAATCACATCACCATCATTCCGACGCTGCGGGCGCTGCTGGA
GCAGCCGGACTTCGGCATCGATGGCTTCATCGGACCCGGCCATGTCTCCATGGTCATCGGCACGGCGCCCTACCGCTTCA
TCGCCGAGGAATTCCGCAAGCCGCTGGTGGTGGCGGGCTTCGAACCCATCGATCTCCTGCAATCCCTGCTGATGATTCTG
CGCCAGATGGCGGCGGGCGAGGCGCGGATCGAGAACCAGTACGCCCGCGTCGTGCCGGAGCGCGGCAACCCCTCCGCCTT
GCGTGCGGTGGAGGAGGTGTATGAGCCTCGCCCCACATTCGAATGGCGGGGCCTTGGCTCCATCGAGCGCTCGGGTGTGC
GCCTGCGCGAGCCCTATGCCGCCTTCGATGCCGAGCGGCGCTTCGCCGTGCCGGACGTGAAGGTGGCCGATCCCGCGGCC
TGCCGCTGCGGCGAGGTGCTGACCGGCGCCGTGAAACCGTGGGCCTGTCCGGTGTTCGGCACCACCTGCACGCCGGAGAT
GCCGCTCGGCGCCCTTATGGTGTCATCCGAGGGCGCTTGCGCGGCCTATTACCAATATGGCGGCCTGCGGGGGGCAGCAT
GA

Upstream 100 bases:

>100_bases
GAAGGTGCTGGCGGAGATCGGCGAGATGGAAGGCGAATTGGATGCCATGCGCACCGGCTCCGTCGCACCCCTCGCTCCGG
CTAATTGAGGAGGCGAGCCC

Downstream 100 bases:

>100_bases
ACGGACCCTTCTCCCTTCCCCGCCGCGCGCCCCGCAAGGTGACGCAGCCCAAGGTGACGCTGGCCCATGGCGGCGGCGGC
ACTGCCATGCGCGATCTCAT

Product: hydrogenase formation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MRFVDEFRDPALAAALIREIGTICATLGRAKDDPVTVMEVCGGHTHAIFRYGLEGLLPDLIEFVHGPGCPVCVLPMGRVD
DCVAIAERPEVIFATFGDAMRVPGSRKSLLQAKADGADVRMVYSPLDALELARRNPDREVVFFGLGFETTMPSTALTVQR
AARERITNFSLFCNHITIIPTLRALLEQPDFGIDGFIGPGHVSMVIGTAPYRFIAEEFRKPLVVAGFEPIDLLQSLLMIL
RQMAAGEARIENQYARVVPERGNPSALRAVEEVYEPRPTFEWRGLGSIERSGVRLREPYAAFDAERRFAVPDVKVADPAA
CRCGEVLTGAVKPWACPVFGTTCTPEMPLGALMVSSEGACAAYYQYGGLRGAA

Sequences:

>Translated_373_residues
MRFVDEFRDPALAAALIREIGTICATLGRAKDDPVTVMEVCGGHTHAIFRYGLEGLLPDLIEFVHGPGCPVCVLPMGRVD
DCVAIAERPEVIFATFGDAMRVPGSRKSLLQAKADGADVRMVYSPLDALELARRNPDREVVFFGLGFETTMPSTALTVQR
AARERITNFSLFCNHITIIPTLRALLEQPDFGIDGFIGPGHVSMVIGTAPYRFIAEEFRKPLVVAGFEPIDLLQSLLMIL
RQMAAGEARIENQYARVVPERGNPSALRAVEEVYEPRPTFEWRGLGSIERSGVRLREPYAAFDAERRFAVPDVKVADPAA
CRCGEVLTGAVKPWACPVFGTTCTPEMPLGALMVSSEGACAAYYQYGGLRGAA
>Mature_373_residues
MRFVDEFRDPALAAALIREIGTICATLGRAKDDPVTVMEVCGGHTHAIFRYGLEGLLPDLIEFVHGPGCPVCVLPMGRVD
DCVAIAERPEVIFATFGDAMRVPGSRKSLLQAKADGADVRMVYSPLDALELARRNPDREVVFFGLGFETTMPSTALTVQR
AARERITNFSLFCNHITIIPTLRALLEQPDFGIDGFIGPGHVSMVIGTAPYRFIAEEFRKPLVVAGFEPIDLLQSLLMIL
RQMAAGEARIENQYARVVPERGNPSALRAVEEVYEPRPTFEWRGLGSIERSGVRLREPYAAFDAERRFAVPDVKVADPAA
CRCGEVLTGAVKPWACPVFGTTCTPEMPLGALMVSSEGACAAYYQYGGLRGAA

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=366, Percent_Identity=61.7486338797814, Blast_Score=474, Evalue=1e-135,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 40682; Mature: 40682

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFVDEFRDPALAAALIREIGTICATLGRAKDDPVTVMEVCGGHTHAIFRYGLEGLLPDL
CCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
IEFVHGPGCPVCVLPMGRVDDCVAIAERPEVIFATFGDAMRVPGSRKSLLQAKADGADVR
HHHHCCCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCHHCCCCCHHHHHHHCCCCCCEE
MVYSPLDALELARRNPDREVVFFGLGFETTMPSTALTVQRAARERITNFSLFCNHITIIP
EEECCHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLRALLEQPDFGIDGFIGPGHVSMVIGTAPYRFIAEEFRKPLVVAGFEPIDLLQSLLMIL
HHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
RQMAAGEARIENQYARVVPERGNPSALRAVEEVYEPRPTFEWRGLGSIERSGVRLREPYA
HHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCHH
AFDAERRFAVPDVKVADPAACRCGEVLTGAVKPWACPVFGTTCTPEMPLGALMVSSEGAC
HHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCE
AAYYQYGGLRGAA
EEEEHHCCCCCCC
>Mature Secondary Structure
MRFVDEFRDPALAAALIREIGTICATLGRAKDDPVTVMEVCGGHTHAIFRYGLEGLLPDL
CCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
IEFVHGPGCPVCVLPMGRVDDCVAIAERPEVIFATFGDAMRVPGSRKSLLQAKADGADVR
HHHHCCCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCHHCCCCCHHHHHHHCCCCCCEE
MVYSPLDALELARRNPDREVVFFGLGFETTMPSTALTVQRAARERITNFSLFCNHITIIP
EEECCHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLRALLEQPDFGIDGFIGPGHVSMVIGTAPYRFIAEEFRKPLVVAGFEPIDLLQSLLMIL
HHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
RQMAAGEARIENQYARVVPERGNPSALRAVEEVYEPRPTFEWRGLGSIERSGVRLREPYA
HHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCHH
AFDAERRFAVPDVKVADPAACRCGEVLTGAVKPWACPVFGTTCTPEMPLGALMVSSEGAC
HHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCE
AAYYQYGGLRGAA
EEEEHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]