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The map label for this gene is hupC [H]

Identifier: 158422224

GI number: 158422224

Start: 668416

End: 669141

Strand: Direct

Name: hupC [H]

Synonym: AZC_0600

Alternate gene names: 158422224

Gene position: 668416-669141 (Clockwise)

Preceding gene: 158422223

Following gene: 158422225

Centisome position: 12.45

GC content: 62.95

Gene sequence:

>726_bases
ATGAGCGACATTCCCCTCTCCCAACCCAAGGCGGCGGAGGCTCCCAAGGAGCGGCGCCTGCCGACGGTCTACGTCTATGA
GGCGCCGGTGCGCCTGTGGCACTGGGTGAATGCCCTGTGCATCGTCGTCCTGTGCATCACCGGCTATCTCATCGCCTCGC
CCCTGCCGACGCTGTCAGGTGAGCCGAGCGCGCATTACCAGATGGGGTACATCCGCTTCTTCCATTTCGCCGCCGCCTAC
ATCTTCGCGGTGGGCTTCGTGGGGCGGGTGCTCTGGGCCTTCGTGGGCAATAAATATTCCCGCGAGCTGTTCACCTTCCC
CTTCTGGCGCGCGAGCTTCTGGCGCGGGCTCATCATCGAGGTGAAGTGGTATGCCTTCCTGAAGCCGCGGCCGCTGAAGT
TCGTCGGTCACAACCCCCTGGCGCAGTTCTTCATGTTCTTCGTCATGGTGCTGGGCGGGCTGTTCATGATCGGCACCGGC
TTCGCCCTCTATTCGGAGGGGGCGGGCCTCGGCTCCTGGCAGGACCGCATGTTCGGCTGGATCATCCCGCTACTGGGCGG
CTCCATGCAGGTGCACACGCTGCACCACATCGGCATGTGGGTGTTCATCCTGTTCGTGATCATCCATGTCTATTCGGTGA
TCCGGGAGGACATCATGTCCCGCCAGACCATGATCTCCGCCATGACCAACGGCACCCGCAGCTTCCGCGACGACGATCCC
GAATAG

Upstream 100 bases:

>100_bases
GCTGCACTCCTTCGACCCGTGCCTCGCCTGCTCCACCCACGTGCTTGCGCCGGGCGGGGAGGAACTCGCCCGCGTCACCG
TGCGCTGAGGGGAGGGCGCC

Downstream 100 bases:

>100_bases
GGCGCGCACGGCTTGTCCTGCCCCTCTGGCGCGGCTTCGGCCGCGCCTTTTTTGTATGGAAGATAGGTTTCCATCTTTGT
GAATAGATGGAAGGATGTTT

Product: HupC protein

Products: oxidized ferredoxin; H2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSDIPLSQPKAAEAPKERRLPTVYVYEAPVRLWHWVNALCIVVLCITGYLIASPLPTLSGEPSAHYQMGYIRFFHFAAAY
IFAVGFVGRVLWAFVGNKYSRELFTFPFWRASFWRGLIIEVKWYAFLKPRPLKFVGHNPLAQFFMFFVMVLGGLFMIGTG
FALYSEGAGLGSWQDRMFGWIIPLLGGSMQVHTLHHIGMWVFILFVIIHVYSVIREDIMSRQTMISAMTNGTRSFRDDDP
E

Sequences:

>Translated_241_residues
MSDIPLSQPKAAEAPKERRLPTVYVYEAPVRLWHWVNALCIVVLCITGYLIASPLPTLSGEPSAHYQMGYIRFFHFAAAY
IFAVGFVGRVLWAFVGNKYSRELFTFPFWRASFWRGLIIEVKWYAFLKPRPLKFVGHNPLAQFFMFFVMVLGGLFMIGTG
FALYSEGAGLGSWQDRMFGWIIPLLGGSMQVHTLHHIGMWVFILFVIIHVYSVIREDIMSRQTMISAMTNGTRSFRDDDP
E
>Mature_240_residues
SDIPLSQPKAAEAPKERRLPTVYVYEAPVRLWHWVNALCIVVLCITGYLIASPLPTLSGEPSAHYQMGYIRFFHFAAAYI
FAVGFVGRVLWAFVGNKYSRELFTFPFWRASFWRGLIIEVKWYAFLKPRPLKFVGHNPLAQFFMFFVMVLGGLFMIGTGF
ALYSEGAGLGSWQDRMFGWIIPLLGGSMQVHTLHHIGMWVFILFVIIHVYSVIREDIMSRQTMISAMTNGTRSFRDDDPE

Specific function: Probable b-type cytochrome [H]

COG id: COG1969

COG function: function code C; Ni,Fe-hydrogenase I cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupC/hyaC/hydC family [H]

Homologues:

Organism=Escherichia coli, GI1787208, Length=225, Percent_Identity=48.4444444444444, Blast_Score=215, Evalue=2e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174
- InterPro:   IPR000516 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 27663; Mature: 27532

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS00882 NI_HGENASE_CYTB_1 ; PS00883 NI_HGENASE_CYTB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIPLSQPKAAEAPKERRLPTVYVYEAPVRLWHWVNALCIVVLCITGYLIASPLPTLSG
CCCCCCCCCCCCCCCHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EPSAHYQMGYIRFFHFAAAYIFAVGFVGRVLWAFVGNKYSRELFTFPFWRASFWRGLIIE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHCCEEEE
VKWYAFLKPRPLKFVGHNPLAQFFMFFVMVLGGLFMIGTGFALYSEGAGLGSWQDRMFGW
EEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHH
IIPLLGGSMQVHTLHHIGMWVFILFVIIHVYSVIREDIMSRQTMISAMTNGTRSFRDDDP
HHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
E
C
>Mature Secondary Structure 
SDIPLSQPKAAEAPKERRLPTVYVYEAPVRLWHWVNALCIVVLCITGYLIASPLPTLSG
CCCCCCCCCCCCCCHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EPSAHYQMGYIRFFHFAAAYIFAVGFVGRVLWAFVGNKYSRELFTFPFWRASFWRGLIIE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHCCEEEE
VKWYAFLKPRPLKFVGHNPLAQFFMFFVMVLGGLFMIGTGFALYSEGAGLGSWQDRMFGW
EEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHH
IIPLLGGSMQVHTLHHIGMWVFILFVIIHVYSVIREDIMSRQTMISAMTNGTRSFRDDDP
HHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Reduced ferredoxin; 2 H+ [C]

Specific reaction: Reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2 [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7966281 [H]