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The map label for this gene is cydA [H]

Identifier: 158422208

GI number: 158422208

Start: 650026

End: 651600

Strand: Direct

Name: cydA [H]

Synonym: AZC_0584

Alternate gene names: 158422208

Gene position: 650026-651600 (Clockwise)

Preceding gene: 158422207

Following gene: 158422209

Centisome position: 12.11

GC content: 64.7

Gene sequence:

>1575_bases
ATGGAATTCGATATCGTTTCCCTGTCGCGACTTCAGTTCGCGATGACGGCGCTCTACCACTTCCTGTTCGTGCCGCTGAC
TCTCGGCCTGTCGATCATCGTCGCCATCATGGAGACGGTGTATGTGATGACCGGCCGCACCATCTGGCGCCAGATGACCA
AGTTCTGGGGCACGCTCTTCGGCATCAATTTCGTGCTGGGCGTCGCCACCGGGCTCGTCATGGAGTTCCAGTTCGGCATG
AACTGGAGCTACTACAGCCATTATGTGGGCGACATCTTCGGCGCCCCGCTGGCCATTGAGGGCCTCATGGCCTTCTTCCT
GGAAGCGACCTTCGTGGGTCTCTTCTTCTTCGGCTGGGACCGCATGTCCAAGGTGGGGCACCTCGTCGCCACCTGGGCGG
TGGCCTTCGGCTCGAACTTCTCGGCCCTCTGGATCCTGATCGCCAACGGCTGGATGCAGAACCCGGTGGGTGCGGTGTTC
AACCCGCAGACCATGCGCATGGAGGTCGATGACTTCTATGCCGTGCTGTTCAACCCGGTGGCGCAGGCCAAGTTCGTGCA
CACGGTCTCGGCTGGCTACACCACGGCCTCGGTTTTCGTGCTCGGCGTCTCGGCCTGGTACCTGCTGAAGGGCCGGCACA
TCGAGCTCGCCAAGCGCTCCATGACGGTTGCCGCCTCCTTCGGCCTTGCCGCCGCTTTGTCGGTGGTCGTGCTGGGTGAC
GAGAGCGGCTATCTCACCACCGAGCATCAGAAGATGAAGCTCGCGGCCATGGAGGCGATCTGGCGCACGGAGCCTGTGCC
CGCACCCTTCACCGTGGTCGGCTTCCCCGACCAGAAGGCTCGCGAGACCCACTATGCGGTGGAGATCCCGTGGGTGGGCG
GCCTCATCGATACGCGCTCGCTCAACACGCCTGTGGAAGGCATCGAGGAGCTGGTCGAGCGCGCCAAGGGCAACATCGCC
AAGGGCGTGCTCGCCTATGACGCGCTCCAGAAGATTCGCGCCGCCGGCTCGGCAGCGGTGCCGGTCGACGTGCAGAAGAC
CTTCGAGGCGAACGGCAACCTGCTCGGCTATGCGCTGCTGCTGAAGCGCTATGTGGACGATCCGCGTCAGGCAACGCCCG
AACAGATCGCCAAGGCGGCCTGGGATACGGTGCCGCAGGTGGCGCCGCTGTTCTGGACCTTCCGCATCATGGTCGGCGTC
GGTTTCTTCATGATCCTGCTGATGGCCACCTTCTTCACCCTTTCGGCCCGCCGCCAGCTCGACCGCTTCCCGCTGCTGCT
GCGCATCGCCGTTCTGGCGATCCCGCTGCCGTGGCTCGCCGCCGAATGCGGCTGGTTCGTCGCCGAGTTCGGCCGGCAGC
CCTGGATCATCGAGGGCATCCTGCCCACCGCCTCGGCGGTCTCCAGCCTCGGGGCGATGACGGTGCTGCTGACCATCGCC
GGCTTCGTCCTGATCTACACCACCCTCTTCATCATCGAGATGGGCCTGATGCTGCGGGCGATCCGCAAGGGTCCGGCGCC
GGACAATGAGCCGGAAGCCGAACTCATCCCCGCCACCGTCGTGCCCGCGGAGTGA

Upstream 100 bases:

>100_bases
TGCTCGCCGGCCTTCGGCCCGACTGATTCACCGCTGTTCGGTTCCGACGGTCGCGCCGCCGGGACCTCCCTTCATTCGGG
GCAACCCGAGGAGAACGAGG

Downstream 100 bases:

>100_bases
CACCATGATCCTTCATGACCTCATCAATTACGAGGTGCTCCGCCTCATCTGGTGGCTGCTTCTCGGTGTCCTGCTCATCG
GCTTTGCCGTGACGGACGGC

Product: cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MEFDIVSLSRLQFAMTALYHFLFVPLTLGLSIIVAIMETVYVMTGRTIWRQMTKFWGTLFGINFVLGVATGLVMEFQFGM
NWSYYSHYVGDIFGAPLAIEGLMAFFLEATFVGLFFFGWDRMSKVGHLVATWAVAFGSNFSALWILIANGWMQNPVGAVF
NPQTMRMEVDDFYAVLFNPVAQAKFVHTVSAGYTTASVFVLGVSAWYLLKGRHIELAKRSMTVAASFGLAAALSVVVLGD
ESGYLTTEHQKMKLAAMEAIWRTEPVPAPFTVVGFPDQKARETHYAVEIPWVGGLIDTRSLNTPVEGIEELVERAKGNIA
KGVLAYDALQKIRAAGSAAVPVDVQKTFEANGNLLGYALLLKRYVDDPRQATPEQIAKAAWDTVPQVAPLFWTFRIMVGV
GFFMILLMATFFTLSARRQLDRFPLLLRIAVLAIPLPWLAAECGWFVAEFGRQPWIIEGILPTASAVSSLGAMTVLLTIA
GFVLIYTTLFIIEMGLMLRAIRKGPAPDNEPEAELIPATVVPAE

Sequences:

>Translated_524_residues
MEFDIVSLSRLQFAMTALYHFLFVPLTLGLSIIVAIMETVYVMTGRTIWRQMTKFWGTLFGINFVLGVATGLVMEFQFGM
NWSYYSHYVGDIFGAPLAIEGLMAFFLEATFVGLFFFGWDRMSKVGHLVATWAVAFGSNFSALWILIANGWMQNPVGAVF
NPQTMRMEVDDFYAVLFNPVAQAKFVHTVSAGYTTASVFVLGVSAWYLLKGRHIELAKRSMTVAASFGLAAALSVVVLGD
ESGYLTTEHQKMKLAAMEAIWRTEPVPAPFTVVGFPDQKARETHYAVEIPWVGGLIDTRSLNTPVEGIEELVERAKGNIA
KGVLAYDALQKIRAAGSAAVPVDVQKTFEANGNLLGYALLLKRYVDDPRQATPEQIAKAAWDTVPQVAPLFWTFRIMVGV
GFFMILLMATFFTLSARRQLDRFPLLLRIAVLAIPLPWLAAECGWFVAEFGRQPWIIEGILPTASAVSSLGAMTVLLTIA
GFVLIYTTLFIIEMGLMLRAIRKGPAPDNEPEAELIPATVVPAE
>Mature_524_residues
MEFDIVSLSRLQFAMTALYHFLFVPLTLGLSIIVAIMETVYVMTGRTIWRQMTKFWGTLFGINFVLGVATGLVMEFQFGM
NWSYYSHYVGDIFGAPLAIEGLMAFFLEATFVGLFFFGWDRMSKVGHLVATWAVAFGSNFSALWILIANGWMQNPVGAVF
NPQTMRMEVDDFYAVLFNPVAQAKFVHTVSAGYTTASVFVLGVSAWYLLKGRHIELAKRSMTVAASFGLAAALSVVVLGD
ESGYLTTEHQKMKLAAMEAIWRTEPVPAPFTVVGFPDQKARETHYAVEIPWVGGLIDTRSLNTPVEGIEELVERAKGNIA
KGVLAYDALQKIRAAGSAAVPVDVQKTFEANGNLLGYALLLKRYVDDPRQATPEQIAKAAWDTVPQVAPLFWTFRIMVGV
GFFMILLMATFFTLSARRQLDRFPLLLRIAVLAIPLPWLAAECGWFVAEFGRQPWIIEGILPTASAVSSLGAMTVLLTIA
GFVLIYTTLFIIEMGLMLRAIRKGPAPDNEPEAELIPATVVPAE

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=503, Percent_Identity=57.455268389662, Blast_Score=594, Evalue=1e-171,
Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=51.7857142857143, Blast_Score=523, Evalue=1e-149,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 57836; Mature: 57836

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFDIVSLSRLQFAMTALYHFLFVPLTLGLSIIVAIMETVYVMTGRTIWRQMTKFWGTLF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GINFVLGVATGLVMEFQFGMNWSYYSHYVGDIFGAPLAIEGLMAFFLEATFVGLFFFGWD
HHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
RMSKVGHLVATWAVAFGSNFSALWILIANGWMQNPVGAVFNPQTMRMEVDDFYAVLFNPV
HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH
AQAKFVHTVSAGYTTASVFVLGVSAWYLLKGRHIELAKRSMTVAASFGLAAALSVVVLGD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEC
ESGYLTTEHQKMKLAAMEAIWRTEPVPAPFTVVGFPDQKARETHYAVEIPWVGGLIDTRS
CCCCEECHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHCCCCEEEEECCCCCCCCCCC
LNTPVEGIEELVERAKGNIAKGVLAYDALQKIRAAGSAAVPVDVQKTFEANGNLLGYALL
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHH
LKRYVDDPRQATPEQIAKAAWDTVPQVAPLFWTFRIMVGVGFFMILLMATFFTLSARRQL
HHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRFPLLLRIAVLAIPLPWLAAECGWFVAEFGRQPWIIEGILPTASAVSSLGAMTVLLTIA
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
GFVLIYTTLFIIEMGLMLRAIRKGPAPDNEPEAELIPATVVPAE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCC
>Mature Secondary Structure
MEFDIVSLSRLQFAMTALYHFLFVPLTLGLSIIVAIMETVYVMTGRTIWRQMTKFWGTLF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GINFVLGVATGLVMEFQFGMNWSYYSHYVGDIFGAPLAIEGLMAFFLEATFVGLFFFGWD
HHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
RMSKVGHLVATWAVAFGSNFSALWILIANGWMQNPVGAVFNPQTMRMEVDDFYAVLFNPV
HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH
AQAKFVHTVSAGYTTASVFVLGVSAWYLLKGRHIELAKRSMTVAASFGLAAALSVVVLGD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEC
ESGYLTTEHQKMKLAAMEAIWRTEPVPAPFTVVGFPDQKARETHYAVEIPWVGGLIDTRS
CCCCEECHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHCCCCEEEEECCCCCCCCCCC
LNTPVEGIEELVERAKGNIAKGVLAYDALQKIRAAGSAAVPVDVQKTFEANGNLLGYALL
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHH
LKRYVDDPRQATPEQIAKAAWDTVPQVAPLFWTFRIMVGVGFFMILLMATFFTLSARRQL
HHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRFPLLLRIAVLAIPLPWLAAECGWFVAEFGRQPWIIEGILPTASAVSSLGAMTVLLTIA
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
GFVLIYTTLFIIEMGLMLRAIRKGPAPDNEPEAELIPATVVPAE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]