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The map label for this gene is cydB [C]

Identifier: 158422209

GI number: 158422209

Start: 651605

End: 652759

Strand: Direct

Name: cydB [C]

Synonym: AZC_0585

Alternate gene names: 158422209

Gene position: 651605-652759 (Clockwise)

Preceding gene: 158422208

Following gene: 158422210

Centisome position: 12.13

GC content: 66.06

Gene sequence:

>1155_bases
ATGATCCTTCATGACCTCATCAATTACGAGGTGCTCCGCCTCATCTGGTGGCTGCTTCTCGGTGTCCTGCTCATCGGCTT
TGCCGTGACGGACGGCTTCGACCTCGGCGTCGCCACCCTCCTGCCCTTCGTGGGCCGGACGGACGTGGAACGGCGGGTGG
CCATCAACACCATCGGCCCGGTGTGGGAAGGCAATCAGGTGTGGCTGATCCTCGGCGGCGGCGCCATCTTCGCCGCCTGG
CCGCCGCTCTATGCCGTGTCGTTCTCGGGCTTCTACCTCGCCATGTTCGCCATCCTGGCGGCGCTGATCCTGCGGCCCGT
GGGCTTCAAGTATCGCTCCAAGCGGGACAGCGAGGCCTGGCGCAAGGGCTGGGACTGGGCGCTGTTCGTCGGCGGCTTCG
TGCCGGCGCTGATCTTCGGCGTCGCGGTGGGCAACACGCTTCAGGGCGTGCCGTTCCGGCTCGATGACGATCTGCGCATT
TTCTATGACGGCAGCTTCTTCGGCCTGCTCAATCCCTTCGCTTTGCTGTGCGGCCTGCTGTCGGTGGCCATGCTGGTGAC
CCATGGCGCCACCTGGCTGCAACTCAAGGCGGATGGTCCGGTGGCGGACCGGGCGCGGACCTACGGCAGCATTTCCGCTC
TTGTGGCCGTGGTGCTGTTCGTCCTCGCCGGCGTGCTGCTGTACAGCTTCGTCGCCGGCTACAAGATCACGAGCCCGATC
AATCCGCTCGGGCCGTCCAATCCGCTTCTGAAGACGGCGGCCACCGCCCCCGGCGCATGGTTCGCCAATTATGCCACTGC
GCCGGGGCTGCTCGCGGCACCCGCCATCGGCATCGTCGGCCTGCTCGCCGCCGGGCTGGCGCTGCGGCTGAAGTGGGAAG
GCGCGGGCGTGCTGCTGTCGGGCCTCGGCATCTTCGGCATCATCAGCACGGTCGGGGTGTCGATGTTCCCCTTCATCCTG
CCCTCCACCGTGGACCCGCGCTTCAGCCTGACGGTGTGGGATGCCTCCTCGAGCCATCTCACCCTGTTCATCATGCTGGT
GTCGACGGTGATCTTCCTGCCCATCATCCTGCTCTACACCACGTGGGTGTATCGGGTGATGTGGGGCAAGGTGGATGCCA
AGGCCATCCGCGAAGACCGCGGCCACGCCTACTGA

Upstream 100 bases:

>100_bases
ATGGGCCTGATGCTGCGGGCGATCCGCAAGGGTCCGGCGCCGGACAATGAGCCGGAAGCCGAACTCATCCCCGCCACCGT
CGTGCCCGCGGAGTGACACC

Downstream 100 bases:

>100_bases
GCAAGAGGAGACTGAGACATGTGGTATTTCGCCTGGATCCTCGGCCTGCCTCTGGCGGCGGCCTTCGCCGTGCTCAACGC
CATGTGGTACGAGCTGATGG

Product: cytochrome d oxidase subunit II

Products: NA

Alternate protein names: Cytochrome oxidase subunit II [H]

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MILHDLINYEVLRLIWWLLLGVLLIGFAVTDGFDLGVATLLPFVGRTDVERRVAINTIGPVWEGNQVWLILGGGAIFAAW
PPLYAVSFSGFYLAMFAILAALILRPVGFKYRSKRDSEAWRKGWDWALFVGGFVPALIFGVAVGNTLQGVPFRLDDDLRI
FYDGSFFGLLNPFALLCGLLSVAMLVTHGATWLQLKADGPVADRARTYGSISALVAVVLFVLAGVLLYSFVAGYKITSPI
NPLGPSNPLLKTAATAPGAWFANYATAPGLLAAPAIGIVGLLAAGLALRLKWEGAGVLLSGLGIFGIISTVGVSMFPFIL
PSTVDPRFSLTVWDASSSHLTLFIMLVSTVIFLPIILLYTTWVYRVMWGKVDAKAIREDRGHAY

Sequences:

>Translated_384_residues
MILHDLINYEVLRLIWWLLLGVLLIGFAVTDGFDLGVATLLPFVGRTDVERRVAINTIGPVWEGNQVWLILGGGAIFAAW
PPLYAVSFSGFYLAMFAILAALILRPVGFKYRSKRDSEAWRKGWDWALFVGGFVPALIFGVAVGNTLQGVPFRLDDDLRI
FYDGSFFGLLNPFALLCGLLSVAMLVTHGATWLQLKADGPVADRARTYGSISALVAVVLFVLAGVLLYSFVAGYKITSPI
NPLGPSNPLLKTAATAPGAWFANYATAPGLLAAPAIGIVGLLAAGLALRLKWEGAGVLLSGLGIFGIISTVGVSMFPFIL
PSTVDPRFSLTVWDASSSHLTLFIMLVSTVIFLPIILLYTTWVYRVMWGKVDAKAIREDRGHAY
>Mature_384_residues
MILHDLINYEVLRLIWWLLLGVLLIGFAVTDGFDLGVATLLPFVGRTDVERRVAINTIGPVWEGNQVWLILGGGAIFAAW
PPLYAVSFSGFYLAMFAILAALILRPVGFKYRSKRDSEAWRKGWDWALFVGGFVPALIFGVAVGNTLQGVPFRLDDDLRI
FYDGSFFGLLNPFALLCGLLSVAMLVTHGATWLQLKADGPVADRARTYGSISALVAVVLFVLAGVLLYSFVAGYKITSPI
NPLGPSNPLLKTAATAPGAWFANYATAPGLLAAPAIGIVGLLAAGLALRLKWEGAGVLLSGLGIFGIISTVGVSMFPFIL
PSTVDPRFSLTVWDASSSHLTLFIMLVSTVIFLPIILLYTTWVYRVMWGKVDAKAIREDRGHAY

Specific function: Probable cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB and CydB. Probable ortholog of the ancestor of AppB/CydB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=51.1873350923483, Blast_Score=388, Evalue=1e-109,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=48.2849604221636, Blast_Score=363, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41555; Mature: 41555

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILHDLINYEVLRLIWWLLLGVLLIGFAVTDGFDLGVATLLPFVGRTDVERRVAINTIGP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHEEEEECCCC
VWEGNQVWLILGGGAIFAAWPPLYAVSFSGFYLAMFAILAALILRPVGFKYRSKRDSEAW
CCCCCEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
RKGWDWALFVGGFVPALIFGVAVGNTLQGVPFRLDDDLRIFYDGSFFGLLNPFALLCGLL
HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHHH
SVAMLVTHGATWLQLKADGPVADRARTYGSISALVAVVLFVLAGVLLYSFVAGYKITSPI
HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCC
NPLGPSNPLLKTAATAPGAWFANYATAPGLLAAPAIGIVGLLAAGLALRLKWEGAGVLLS
CCCCCCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
GLGIFGIISTVGVSMFPFILPSTVDPRFSLTVWDASSSHLTLFIMLVSTVIFLPIILLYT
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
TWVYRVMWGKVDAKAIREDRGHAY
HHHHHHHHCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MILHDLINYEVLRLIWWLLLGVLLIGFAVTDGFDLGVATLLPFVGRTDVERRVAINTIGP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHEEEEECCCC
VWEGNQVWLILGGGAIFAAWPPLYAVSFSGFYLAMFAILAALILRPVGFKYRSKRDSEAW
CCCCCEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
RKGWDWALFVGGFVPALIFGVAVGNTLQGVPFRLDDDLRIFYDGSFFGLLNPFALLCGLL
HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHHH
SVAMLVTHGATWLQLKADGPVADRARTYGSISALVAVVLFVLAGVLLYSFVAGYKITSPI
HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCC
NPLGPSNPLLKTAATAPGAWFANYATAPGLLAAPAIGIVGLLAAGLALRLKWEGAGVLLS
CCCCCCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
GLGIFGIISTVGVSMFPFILPSTVDPRFSLTVWDASSSHLTLFIMLVSTVIFLPIILLYT
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
TWVYRVMWGKVDAKAIREDRGHAY
HHHHHHHHCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]