Click here to switch to the map view.

The map label for this gene is luxR [H]

Identifier: 158422196

GI number: 158422196

Start: 633885

End: 634556

Strand: Reverse

Name: luxR [H]

Synonym: AZC_0572

Alternate gene names: 158422196

Gene position: 634556-633885 (Counterclockwise)

Preceding gene: 158422198

Following gene: 158422195

Centisome position: 11.82

GC content: 66.67

Gene sequence:

>672_bases
TTGGGAGACGCCGACGCCGGATACCGGCTGGTCATCGCGGACGATCATCCCCTGTTCCGCGGCGCGCTGCGCGAGGCCGT
GGCCGGCGAGTTTCCGTCCGCAGAGATCGTGGAGGTCGGCACGTTTGACGACCTGCATGCGCTGCTGGAACGCGAAGACG
ACTTCGACCTGATCCTGCTCGATCTCACCATGCCCGGCGCCCGAGGCTTTTCTGGCCTCATCTATCTCAGGGCGCAGTAT
GCCGGCGTGCCGGTGGTGGTCGTCTCCGGCAATGAGGAACCGGCGGTCATCCGCCGCTGCATCGATCTCGGCGCCTCGGG
CTTTATTCCGAAGACCATGGGCATTGCCGGCATGCGGCAGTCTGTCGCCACGGTTCTTGCAGGCGGCACCTCAGTGCCCC
CGGATCTTGGTCCCCCCACCGCGCAGGACGGGGAGGCCGACGCCATCATCTCCCGCCTCGCCACGCTGACGCCGCAGCAG
GTGCGCGTGCTGATGATGCTGGCGGAGGGGCGCCTTAACAAGCAGATCGCCTATGAGCTCGGCGTCTCCGAGGCGACCGT
GAAGGCCCATGTGTCGGCCATCCTCCAGAAGCTCGGCGTGGAAAGCCGCACCCAGGCGGTGATCGCCGTTTCCAAGGTGG
ATGCGGGCCTGTGGAGCGCCAATCAGGCGTGA

Upstream 100 bases:

>100_bases
CTTGTCAGCGTGCGGGTGCGCGCCGATGATCCCTTGACCGATTCGAAGGTTTCCGCTTTTGGGGAAAGACTGCGGGCGGG
GAAGCCGGGGGAGAAGCCTT

Downstream 100 bases:

>100_bases
GCGGCCGGTCGCACCCGATTGTTTCAGCACGGCGGCCGGCTCAACCTCTAAATTAACATGCGCGCGGGCATGATGCCGCC
GGCTTTCCCGCGCGGGCCGG

Product: regulatory protein

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MGDADAGYRLVIADDHPLFRGALREAVAGEFPSAEIVEVGTFDDLHALLEREDDFDLILLDLTMPGARGFSGLIYLRAQY
AGVPVVVVSGNEEPAVIRRCIDLGASGFIPKTMGIAGMRQSVATVLAGGTSVPPDLGPPTAQDGEADAIISRLATLTPQQ
VRVLMMLAEGRLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQAVIAVSKVDAGLWSANQA

Sequences:

>Translated_223_residues
MGDADAGYRLVIADDHPLFRGALREAVAGEFPSAEIVEVGTFDDLHALLEREDDFDLILLDLTMPGARGFSGLIYLRAQY
AGVPVVVVSGNEEPAVIRRCIDLGASGFIPKTMGIAGMRQSVATVLAGGTSVPPDLGPPTAQDGEADAIISRLATLTPQQ
VRVLMMLAEGRLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQAVIAVSKVDAGLWSANQA
>Mature_222_residues
GDADAGYRLVIADDHPLFRGALREAVAGEFPSAEIVEVGTFDDLHALLEREDDFDLILLDLTMPGARGFSGLIYLRAQYA
GVPVVVVSGNEEPAVIRRCIDLGASGFIPKTMGIAGMRQSVATVLAGGTSVPPDLGPPTAQDGEADAIISRLATLTPQQV
RVLMMLAEGRLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQAVIAVSKVDAGLWSANQA

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=203, Percent_Identity=31.5270935960591, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1786747, Length=196, Percent_Identity=29.5918367346939, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788712, Length=197, Percent_Identity=26.9035532994924, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1788546, Length=205, Percent_Identity=26.8292682926829, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1790102, Length=191, Percent_Identity=28.2722513089005, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1789937, Length=203, Percent_Identity=24.1379310344828, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787473, Length=207, Percent_Identity=31.8840579710145, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23493; Mature: 23362

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDADAGYRLVIADDHPLFRGALREAVAGEFPSAEIVEVGTFDDLHALLEREDDFDLILL
CCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHCCCCCCCEEEE
DLTMPGARGFSGLIYLRAQYAGVPVVVVSGNEEPAVIRRCIDLGASGFIPKTMGIAGMRQ
EEECCCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHH
SVATVLAGGTSVPPDLGPPTAQDGEADAIISRLATLTPQQVRVLMMLAEGRLNKQIAYEL
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHC
GVSEATVKAHVSAILQKLGVESRTQAVIAVSKVDAGLWSANQA
CCCHHHHHHHHHHHHHHHCCCCHHHEEEEEEHHCCCCCCCCCC
>Mature Secondary Structure 
GDADAGYRLVIADDHPLFRGALREAVAGEFPSAEIVEVGTFDDLHALLEREDDFDLILL
CCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHCCCCCCCEEEE
DLTMPGARGFSGLIYLRAQYAGVPVVVVSGNEEPAVIRRCIDLGASGFIPKTMGIAGMRQ
EEECCCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHH
SVATVLAGGTSVPPDLGPPTAQDGEADAIISRLATLTPQQVRVLMMLAEGRLNKQIAYEL
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHC
GVSEATVKAHVSAILQKLGVESRTQAVIAVSKVDAGLWSANQA
CCCHHHHHHHHHHHHHHHCCCCHHHEEEEEEHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]