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The map label for this gene is ytfH [H]

Identifier: 158422045

GI number: 158422045

Start: 476714

End: 477142

Strand: Reverse

Name: ytfH [H]

Synonym: AZC_0421

Alternate gene names: 158422045

Gene position: 477142-476714 (Counterclockwise)

Preceding gene: 158422048

Following gene: 158422044

Centisome position: 8.89

GC content: 68.3

Gene sequence:

>429_bases
ATGCAGACCGATCTCCCGCCGAACACCTATGCCGCCGATTGCCCCACCCGCCAGATTCTCGACCGGATCGCGGACAAATG
GGCCGTGCTCATCCTGCAGTTGCTGGCGGACGAACCCCAGCGCTTCAACGCGCTGCGGCGGAAGATCCAGGGCCTGTCGC
AGAAGGTCCTCTCGCAGACGCTGAAGACGCTGGAACGCGACGGCTTCGTCACCCGCACGGCTTTCCCCACGGTGCCGGTG
ACGGTCGAGTATGCCCTCACGCCCCTCGGGGCCTCGCTCGCGGAAACCCTCACGCCCCTGTCCCGTTGGGCGGAGGCGCA
CATCAAGGATGTGGAAGCCGCCCGCGCCGCCTTCGACCACCGCCGGGCCACGTCCGGCGAGGGCGTTCCGCAAGGCCAGA
CAGAGAGTCACGCCCCCGTCGCGCTTTGA

Upstream 100 bases:

>100_bases
AGATGTCCTTTTTAGTATCAGGTGTAAAGAACGCACCTTGGCGTGATCTGGTCACCGTCTGGAAACCTCACGATCCCGCC
GCAGCGCGATAGAGCCGCCG

Downstream 100 bases:

>100_bases
CAGTACGGAACGTCTCCCGAGATCGGTGGGGGCGGATCACCTCCATTTCGTGAACGCAGCATTTCGAAATCACACTCTGG
AACGCCTCCAGGTTGTGATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MQTDLPPNTYAADCPTRQILDRIADKWAVLILQLLADEPQRFNALRRKIQGLSQKVLSQTLKTLERDGFVTRTAFPTVPV
TVEYALTPLGASLAETLTPLSRWAEAHIKDVEAARAAFDHRRATSGEGVPQGQTESHAPVAL

Sequences:

>Translated_142_residues
MQTDLPPNTYAADCPTRQILDRIADKWAVLILQLLADEPQRFNALRRKIQGLSQKVLSQTLKTLERDGFVTRTAFPTVPV
TVEYALTPLGASLAETLTPLSRWAEAHIKDVEAARAAFDHRRATSGEGVPQGQTESHAPVAL
>Mature_142_residues
MQTDLPPNTYAADCPTRQILDRIADKWAVLILQLLADEPQRFNALRRKIQGLSQKVLSQTLKTLERDGFVTRTAFPTVPV
TVEYALTPLGASLAETLTPLSRWAEAHIKDVEAARAAFDHRRATSGEGVPQGQTESHAPVAL

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=108, Percent_Identity=46.2962962962963, Blast_Score=112, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15629; Mature: 15629

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTDLPPNTYAADCPTRQILDRIADKWAVLILQLLADEPQRFNALRRKIQGLSQKVLSQT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LKTLERDGFVTRTAFPTVPVTVEYALTPLGASLAETLTPLSRWAEAHIKDVEAARAAFDH
HHHHHHCCCEEECCCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRATSGEGVPQGQTESHAPVAL
HHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQTDLPPNTYAADCPTRQILDRIADKWAVLILQLLADEPQRFNALRRKIQGLSQKVLSQT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LKTLERDGFVTRTAFPTVPVTVEYALTPLGASLAETLTPLSRWAEAHIKDVEAARAAFDH
HHHHHHCCCEEECCCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRATSGEGVPQGQTESHAPVAL
HHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]