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The map label for this gene is yciR [C]

Identifier: 158422040

GI number: 158422040

Start: 469786

End: 472200

Strand: Direct

Name: yciR [C]

Synonym: AZC_0416

Alternate gene names: 158422040

Gene position: 469786-472200 (Clockwise)

Preceding gene: 158422038

Following gene: 158422041

Centisome position: 8.75

GC content: 68.9

Gene sequence:

>2415_bases
GTGACAGGCGTGCGCGCCAGTTTCCGGCAAGGGATGACGGGCAGACTGGCGGAAAGCGCGCGCTGGCGACGGCTCCGCTT
CCATGCCGCGACGGTCGCGGATGAGGTGGACGGACGTATGGCGAGTGAGAAGATCGAGGCCTCCGGCGAGGCCGCGCGGG
CGAGCGGGCAAGACCAGCCACAGCCAATGGTGCAGCAGGCTCTGCCCTATCCGGTGCCGGACAATGAGGAGGCACGCCTC
GCGGTGCTGGCCTCCTACCATCTGATGGATACTCCGCCGGAGGCGGATTTCGACCGGCTGGCCGCCCTGGCTGCGCGGGT
TTTCGACGTGCCCATCGTCCTCGTGTCGCTGCTGGGCCGCGACCGGCAGTTCTTCAAGGCGAGCGTGGGCTTTCCCGTCT
GCGAGACGAGCCGGGAGGTCTCGTTCTGCGCCCATGCCATCATGCAGGACGAGATCCTCGTCATTCCCGATGCCACCCGC
GATCCGCGCTTCCGCGCCAACCCGCTGGTGCTTGGCCCGCCCTTCATCCGCTTCTATGCCGGCCGCCCGCTGATCGCGCC
CACGGGCGAGAAGGTGGGCACGGTCTGCCTCATCGATCACGAGCCCCGCTTCCGCTTCACCGAGACCGACCGGCACAACC
TCAACGACCTGGCCGCCATGGCGGTGGACCGCATGGAACTGCGGCGGCTGGACCACGCCCGCAACATCAGCCAGGCCCGG
TTCGAGAACATCGCCGCCACCTCCCCCGATGCCATCATCTGCATGAATGCGCAGGGCGAGATCGGCTTCTGGAACAGTTC
CGCCGAGCGCCTGTTCGGCCATGGGGCGCAGGACATTCACGGCCGGTCCTGCCGCATTCTGGTGCCCGGTCACCTGCGCC
GGGCCTATGACGTGCTGATGGAGCGCATGCGCCGGGGCGGCGGCCTCGGCTCCGCCCTGCGCACGTTCGAGGTGACGGGC
CGGCGAAGGGACGGCGTCGAGTTTCCCGCCGAATGCTCCCTCTCCATCTGGCGTGACGGCCCGAACCTCAGCGTGGGGGC
CATCGTGCGCGATGTGAGCGACCGGCGGCAGAATGAGGAGCGGCTCTTCCGCCTCGCCTCGCGGGATACGCTCACCGACC
TGCCGAACCGCAGCGCGTGGCGCCAGTGCCTGTCGCAGACGCTGGCCTCCGAGCCCGGTGCCACCGTTCTGATGATCGAT
CTCGACGGCTTCAAGGAAGCCAACGATACGCTCGGGCACTCCGCCGGTGATGCGGTGCTCAAGGAGGTGGCGGGTCGACT
GGCCTCCAGTTGCCATGAGGCGCTCATCGTGGCGCGGCTCGGCGGCGACGAGTTCGTGGTGCTGCTGGCCGGCAATGACG
AGCATCGGGCGCGGGTGGTGGCCGAGCGCGTGGTCGCGGCCGTCACCGACCGCTACGGCGTCGGCGAGCGCAAGGTCTCC
ATCGGCGCCAGCATCGGCATCGCTTTCTATCCGGCCCATGGCGCGCGCGGCGAGGATCTCATCAGCGCCGCGGATCTTGC
GCTCTACAGGGCGAAGGCCGGCGGCAAGGGCTGCTACGAGGTCTTCACGCCGATGCTGCGCGAGGTGGCCATCGCCCGCC
GCGCCTTCGAGGAGGAACTGCGCCGGGCCTTCGAGAACGGCGAGTTCGAGCTCTATTACCAGCCGCAGGTGCTCACTTCG
CGCGGCCAGTTGATGGGGGCCGAGGCGCTGCTGCGCTGGAACCATCCGCAGCGCGGCCTTCTCACCCCCGTCTCCTTCCT
GGACGTGCTGAGCCACAAGCCTTCCGCCGCGGAGGTGGGGGAATGGATCCTCAACACCGCGCTGAGGCAGGCGGCTGAAT
GGCGGGTGGCGGTGCCGGGCTTCCGCATGGGCGTCAATCTGTTCGAGGCGCAGTTCCGCTCCGGCCGGCTGATGAGCACG
GTGCGCCGGGCGCTGGCGGAGAGCGGCCTGCCGCCCGACGCGCTGGAACTCGAGATCGTGGAGACGATCCTGCTTCAGAC
GGACCCCGCCACCATCCGCCTGCTGCATGATCTGCGCGCCCTCGGCGTCGGCCTCGCCTTTGATGATTACGGCACCGGCT
TTGCGTCCCTGAGCCTCCTCAAGCGCTATCCCGTCTCCCGGCTGAAGATCGACCGCTCCTTCCTGCGCAATGTGAACGAC
GCACCGCGGGACGCCGCCATCGTGAAGGCCGTGCTCTTCCTCGGCCGGGCCTTCGGCATGTCGGTCATCGCGGAAGGGGT
GGAAGACGAGCGGCAGATGGCCTTCCTGCGGGAGAATGGCTGCGACGAGGCGCAGGGCTATCTGTTCGGGCGGCCGATGC
CCGCGCGCGAATTCGCGGCGCGCTTCATCCTGTGCGACACGCCCCCGGGGGACTGCGGGCCGGAGTTACGGGAGCGTGCT
AGGATCGGCGCATGA

Upstream 100 bases:

>100_bases
CAAGCCTCGAGAGAGTGGGAGGCGCAGAGTGCCGGTGGCGCGCATGGGGGGCAAGCCGGTCATCTGCGGCTCTGGTGCGG
GCGTAGGATGAGAATGCGCA

Downstream 100 bases:

>100_bases
CGCTGCCCATCCGCCCCGCCCGACCCGAGGACCGCGCCGCCATCGAAGCGCTGGTCCATGCCGCCTATTCGCCTTATGTC
GCGCGCAACGGGCTGCTGCC

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 804; Mature: 803

Protein sequence:

>804_residues
MTGVRASFRQGMTGRLAESARWRRLRFHAATVADEVDGRMASEKIEASGEAARASGQDQPQPMVQQALPYPVPDNEEARL
AVLASYHLMDTPPEADFDRLAALAARVFDVPIVLVSLLGRDRQFFKASVGFPVCETSREVSFCAHAIMQDEILVIPDATR
DPRFRANPLVLGPPFIRFYAGRPLIAPTGEKVGTVCLIDHEPRFRFTETDRHNLNDLAAMAVDRMELRRLDHARNISQAR
FENIAATSPDAIICMNAQGEIGFWNSSAERLFGHGAQDIHGRSCRILVPGHLRRAYDVLMERMRRGGGLGSALRTFEVTG
RRRDGVEFPAECSLSIWRDGPNLSVGAIVRDVSDRRQNEERLFRLASRDTLTDLPNRSAWRQCLSQTLASEPGATVLMID
LDGFKEANDTLGHSAGDAVLKEVAGRLASSCHEALIVARLGGDEFVVLLAGNDEHRARVVAERVVAAVTDRYGVGERKVS
IGASIGIAFYPAHGARGEDLISAADLALYRAKAGGKGCYEVFTPMLREVAIARRAFEEELRRAFENGEFELYYQPQVLTS
RGQLMGAEALLRWNHPQRGLLTPVSFLDVLSHKPSAAEVGEWILNTALRQAAEWRVAVPGFRMGVNLFEAQFRSGRLMST
VRRALAESGLPPDALELEIVETILLQTDPATIRLLHDLRALGVGLAFDDYGTGFASLSLLKRYPVSRLKIDRSFLRNVND
APRDAAIVKAVLFLGRAFGMSVIAEGVEDERQMAFLRENGCDEAQGYLFGRPMPAREFAARFILCDTPPGDCGPELRERA
RIGA

Sequences:

>Translated_804_residues
MTGVRASFRQGMTGRLAESARWRRLRFHAATVADEVDGRMASEKIEASGEAARASGQDQPQPMVQQALPYPVPDNEEARL
AVLASYHLMDTPPEADFDRLAALAARVFDVPIVLVSLLGRDRQFFKASVGFPVCETSREVSFCAHAIMQDEILVIPDATR
DPRFRANPLVLGPPFIRFYAGRPLIAPTGEKVGTVCLIDHEPRFRFTETDRHNLNDLAAMAVDRMELRRLDHARNISQAR
FENIAATSPDAIICMNAQGEIGFWNSSAERLFGHGAQDIHGRSCRILVPGHLRRAYDVLMERMRRGGGLGSALRTFEVTG
RRRDGVEFPAECSLSIWRDGPNLSVGAIVRDVSDRRQNEERLFRLASRDTLTDLPNRSAWRQCLSQTLASEPGATVLMID
LDGFKEANDTLGHSAGDAVLKEVAGRLASSCHEALIVARLGGDEFVVLLAGNDEHRARVVAERVVAAVTDRYGVGERKVS
IGASIGIAFYPAHGARGEDLISAADLALYRAKAGGKGCYEVFTPMLREVAIARRAFEEELRRAFENGEFELYYQPQVLTS
RGQLMGAEALLRWNHPQRGLLTPVSFLDVLSHKPSAAEVGEWILNTALRQAAEWRVAVPGFRMGVNLFEAQFRSGRLMST
VRRALAESGLPPDALELEIVETILLQTDPATIRLLHDLRALGVGLAFDDYGTGFASLSLLKRYPVSRLKIDRSFLRNVND
APRDAAIVKAVLFLGRAFGMSVIAEGVEDERQMAFLRENGCDEAQGYLFGRPMPAREFAARFILCDTPPGDCGPELRERA
RIGA
>Mature_803_residues
TGVRASFRQGMTGRLAESARWRRLRFHAATVADEVDGRMASEKIEASGEAARASGQDQPQPMVQQALPYPVPDNEEARLA
VLASYHLMDTPPEADFDRLAALAARVFDVPIVLVSLLGRDRQFFKASVGFPVCETSREVSFCAHAIMQDEILVIPDATRD
PRFRANPLVLGPPFIRFYAGRPLIAPTGEKVGTVCLIDHEPRFRFTETDRHNLNDLAAMAVDRMELRRLDHARNISQARF
ENIAATSPDAIICMNAQGEIGFWNSSAERLFGHGAQDIHGRSCRILVPGHLRRAYDVLMERMRRGGGLGSALRTFEVTGR
RRDGVEFPAECSLSIWRDGPNLSVGAIVRDVSDRRQNEERLFRLASRDTLTDLPNRSAWRQCLSQTLASEPGATVLMIDL
DGFKEANDTLGHSAGDAVLKEVAGRLASSCHEALIVARLGGDEFVVLLAGNDEHRARVVAERVVAAVTDRYGVGERKVSI
GASIGIAFYPAHGARGEDLISAADLALYRAKAGGKGCYEVFTPMLREVAIARRAFEEELRRAFENGEFELYYQPQVLTSR
GQLMGAEALLRWNHPQRGLLTPVSFLDVLSHKPSAAEVGEWILNTALRQAAEWRVAVPGFRMGVNLFEAQFRSGRLMSTV
RRALAESGLPPDALELEIVETILLQTDPATIRLLHDLRALGVGLAFDDYGTGFASLSLLKRYPVSRLKIDRSFLRNVNDA
PRDAAIVKAVLFLGRAFGMSVIAEGVEDERQMAFLRENGCDEAQGYLFGRPMPAREFAARFILCDTPPGDCGPELRERAR
IGA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=550, Percent_Identity=30.5454545454545, Blast_Score=295, Evalue=8e-81,
Organism=Escherichia coli, GI87081921, Length=438, Percent_Identity=31.7351598173516, Blast_Score=237, Evalue=2e-63,
Organism=Escherichia coli, GI226510982, Length=448, Percent_Identity=28.5714285714286, Blast_Score=185, Evalue=9e-48,
Organism=Escherichia coli, GI1788381, Length=573, Percent_Identity=27.2251308900524, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=28.9256198347107, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081980, Length=259, Percent_Identity=31.2741312741313, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=33.195020746888, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=31.9672131147541, Blast_Score=127, Evalue=4e-30,
Organism=Escherichia coli, GI1786507, Length=254, Percent_Identity=29.1338582677165, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1787055, Length=238, Percent_Identity=31.0924369747899, Blast_Score=117, Evalue=4e-27,
Organism=Escherichia coli, GI1788849, Length=243, Percent_Identity=34.156378600823, Blast_Score=113, Evalue=6e-26,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=27.9166666666667, Blast_Score=112, Evalue=9e-26,
Organism=Escherichia coli, GI87082096, Length=235, Percent_Identity=30.2127659574468, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1786584, Length=217, Percent_Identity=29.4930875576037, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=33.5227272727273, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=34.8571428571429, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI87081977, Length=181, Percent_Identity=31.4917127071823, Blast_Score=83, Evalue=8e-17,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=35.1851851851852, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI87082007, Length=184, Percent_Identity=35.3260869565217, Blast_Score=79, Evalue=2e-15,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=33.7423312883436, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787802, Length=157, Percent_Identity=32.484076433121, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 88757; Mature: 88626

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGVRASFRQGMTGRLAESARWRRLRFHAATVADEVDGRMASEKIEASGEAARASGQDQP
CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHCCCCCCC
QPMVQQALPYPVPDNEEARLAVLASYHLMDTPPEADFDRLAALAARVFDVPIVLVSLLGR
CHHHHHCCCCCCCCCCCCEEEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
DRQFFKASVGFPVCETSREVSFCAHAIMQDEILVIPDATRDPRFRANPLVLGPPFIRFYA
CHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEECCCHHHHHC
GRPLIAPTGEKVGTVCLIDHEPRFRFTETDRHNLNDLAAMAVDRMELRRLDHARNISQAR
CCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
FENIAATSPDAIICMNAQGEIGFWNSSAERLFGHGAQDIHGRSCRILVPGHLRRAYDVLM
HHHHCCCCCCEEEEECCCCCCEECCCCHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHH
ERMRRGGGLGSALRTFEVTGRRRDGVEFPAECSLSIWRDGPNLSVGAIVRDVSDRRQNEE
HHHHHCCCCCHHHHHHEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHH
RLFRLASRDTLTDLPNRSAWRQCLSQTLASEPGATVLMIDLDGFKEANDTLGHSAGDAVL
HHHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCHHHHHH
KEVAGRLASSCHEALIVARLGGDEFVVLLAGNDEHRARVVAERVVAAVTDRYGVGERKVS
HHHHHHHHHHHHHHEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
IGASIGIAFYPAHGARGEDLISAADLALYRAKAGGKGCYEVFTPMLREVAIARRAFEEEL
ECCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RRAFENGEFELYYQPQVLTSRGQLMGAEALLRWNHPQRGLLTPVSFLDVLSHKPSAAEVG
HHHHHCCCEEEEECCHHHHCCCCHHCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHH
EWILNTALRQAAEWRVAVPGFRMGVNLFEAQFRSGRLMSTVRRALAESGLPPDALELEIV
HHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHH
ETILLQTDPATIRLLHDLRALGVGLAFDDYGTGFASLSLLKRYPVSRLKIDRSFLRNVND
HHHHHCCCCHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCC
APRDAAIVKAVLFLGRAFGMSVIAEGVEDERQMAFLRENGCDEAQGYLFGRPMPAREFAA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHC
RFILCDTPPGDCGPELRERARIGA
EEEEECCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure 
TGVRASFRQGMTGRLAESARWRRLRFHAATVADEVDGRMASEKIEASGEAARASGQDQP
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHCCCCCCC
QPMVQQALPYPVPDNEEARLAVLASYHLMDTPPEADFDRLAALAARVFDVPIVLVSLLGR
CHHHHHCCCCCCCCCCCCEEEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
DRQFFKASVGFPVCETSREVSFCAHAIMQDEILVIPDATRDPRFRANPLVLGPPFIRFYA
CHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEECCCHHHHHC
GRPLIAPTGEKVGTVCLIDHEPRFRFTETDRHNLNDLAAMAVDRMELRRLDHARNISQAR
CCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
FENIAATSPDAIICMNAQGEIGFWNSSAERLFGHGAQDIHGRSCRILVPGHLRRAYDVLM
HHHHCCCCCCEEEEECCCCCCEECCCCHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHH
ERMRRGGGLGSALRTFEVTGRRRDGVEFPAECSLSIWRDGPNLSVGAIVRDVSDRRQNEE
HHHHHCCCCCHHHHHHEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHH
RLFRLASRDTLTDLPNRSAWRQCLSQTLASEPGATVLMIDLDGFKEANDTLGHSAGDAVL
HHHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCHHHHHH
KEVAGRLASSCHEALIVARLGGDEFVVLLAGNDEHRARVVAERVVAAVTDRYGVGERKVS
HHHHHHHHHHHHHHEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
IGASIGIAFYPAHGARGEDLISAADLALYRAKAGGKGCYEVFTPMLREVAIARRAFEEEL
ECCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RRAFENGEFELYYQPQVLTSRGQLMGAEALLRWNHPQRGLLTPVSFLDVLSHKPSAAEVG
HHHHHCCCEEEEECCHHHHCCCCHHCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHH
EWILNTALRQAAEWRVAVPGFRMGVNLFEAQFRSGRLMSTVRRALAESGLPPDALELEIV
HHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHH
ETILLQTDPATIRLLHDLRALGVGLAFDDYGTGFASLSLLKRYPVSRLKIDRSFLRNVND
HHHHHCCCCHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCC
APRDAAIVKAVLFLGRAFGMSVIAEGVEDERQMAFLRENGCDEAQGYLFGRPMPAREFAA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHC
RFILCDTPPGDCGPELRERARIGA
EEEEECCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]