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The map label for this gene is yiaD [H]

Identifier: 158422035

GI number: 158422035

Start: 464356

End: 465501

Strand: Direct

Name: yiaD [H]

Synonym: AZC_0411

Alternate gene names: 158422035

Gene position: 464356-465501 (Clockwise)

Preceding gene: 158422034

Following gene: 158422036

Centisome position: 8.65

GC content: 67.54

Gene sequence:

>1146_bases
TTGAGCGGGCGCCCCTCGGGGCGCCCGTTTGCGTTGGGGAAGCGAGGTCTTGGCCGTTCCTGCGTGCGTGCCTATGATCC
GCTTGCCCGTCTTGGCAGGCCGCGGGGGCGCCGGCGCGGGTTCGACGTCAACTGCCTCAAGGTTCTGCTGATGTCCGTGC
TGATCTGCGCTGCCTGCCGCCTCTTCCGCCGGGACGGGGTGGTCTCTCCTCTCGCCCTCTTCCTGCTCCTTCTTGCCGCG
GCTGCGGTCCCGGCGCGGGCCGCCGACGTGCCCGGCTCACGGGATTATCCCGGCATCAGCCGCTATGCGGGCTCCGAGAT
CATCCGCTACGAGGTCAAGGCGTTCGACGACTATGTGCTCGTCACTGAGCCGATGAAGGGCCGCGCGCGGCAGGGGCTCG
AACTCAAGGGGCAGGTGTTCCGCATCACCTACCGCAACCCGCCCAACCGCACCTCGCTGGAAGTGCTGGAGAACTACCGC
ACCGCGCTTCAGGCGGCGGGGGCGAGCGAGATCTTCACCTGCGCCCATCGGGCCTGCGGCGGGCGGGACTTCAATATCGC
CCAGGTGGACCCTCAGAACTACACCCGCATGGGCGACAATTACGACGACCAGCGCTATCTCGCCGCCAGGCTTCAGGCGC
CGGGCAAGGACGTCTATGTGGCGCTGTTCATCACCCGCTCGCAATCCGGCGCGGCGGCCGACAAGGACCGCATCTTCACC
CAGCTCCACGTGATCGAGGTGAAGTCGATGGATGCCAACATGGTGGTGGTGGACGCCTCCAGGATGGCGGACAGCATCGG
CAAGACCGGCAGCGTCGCGCTCTACGGCATCCTGTTCGACTTCAACAGCGCGGTCATCAAGCCGGAGTCCAAGGCGACGC
TCGACGAGATCGCCAGCCTGCTCCGCAAGGCGCCGGACCTGAAGCTGGTCGTCGTCGGCCACACCGACAATGTGGGCGGC
ATGGACAGCAACATGAAGCTCTCGCAGGCCCGTGCAGAGGCGGTGCGCCGGGCGCTGGTGGAGCAATATGCCATCGCCGC
CGCGCGGCTGCAGGCCTGGGGCGCGGGCTTCATGGCACCGGTCGCCTCCAACCGCACCGACGAGGGGCGGGCCAAGAACC
GCCGCGTGGAGCTGGTGGAACAGTAA

Upstream 100 bases:

>100_bases
TCCGCGTGCCGATTGCCCGCCTCGCCGCCGCGCAGGCTGCGCTCGGCCGCAAGGCCGCCAGCCAGGCCTGATCCGGCCGC
GCCGGACGACGGTTCGCAAT

Downstream 100 bases:

>100_bases
CCGCGCGCCAGCCGGGGGCAGCGCATGGCCGATTTTTCCATCCTGACCGCCATCGGGCTGGTGCTGCGCACCTGGCCGTT
CCTGCTGCTGCGGGTCGCGC

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MSGRPSGRPFALGKRGLGRSCVRAYDPLARLGRPRGRRRGFDVNCLKVLLMSVLICAACRLFRRDGVVSPLALFLLLLAA
AAVPARAADVPGSRDYPGISRYAGSEIIRYEVKAFDDYVLVTEPMKGRARQGLELKGQVFRITYRNPPNRTSLEVLENYR
TALQAAGASEIFTCAHRACGGRDFNIAQVDPQNYTRMGDNYDDQRYLAARLQAPGKDVYVALFITRSQSGAAADKDRIFT
QLHVIEVKSMDANMVVVDASRMADSIGKTGSVALYGILFDFNSAVIKPESKATLDEIASLLRKAPDLKLVVVGHTDNVGG
MDSNMKLSQARAEAVRRALVEQYAIAAARLQAWGAGFMAPVASNRTDEGRAKNRRVELVEQ

Sequences:

>Translated_381_residues
MSGRPSGRPFALGKRGLGRSCVRAYDPLARLGRPRGRRRGFDVNCLKVLLMSVLICAACRLFRRDGVVSPLALFLLLLAA
AAVPARAADVPGSRDYPGISRYAGSEIIRYEVKAFDDYVLVTEPMKGRARQGLELKGQVFRITYRNPPNRTSLEVLENYR
TALQAAGASEIFTCAHRACGGRDFNIAQVDPQNYTRMGDNYDDQRYLAARLQAPGKDVYVALFITRSQSGAAADKDRIFT
QLHVIEVKSMDANMVVVDASRMADSIGKTGSVALYGILFDFNSAVIKPESKATLDEIASLLRKAPDLKLVVVGHTDNVGG
MDSNMKLSQARAEAVRRALVEQYAIAAARLQAWGAGFMAPVASNRTDEGRAKNRRVELVEQ
>Mature_380_residues
SGRPSGRPFALGKRGLGRSCVRAYDPLARLGRPRGRRRGFDVNCLKVLLMSVLICAACRLFRRDGVVSPLALFLLLLAAA
AVPARAADVPGSRDYPGISRYAGSEIIRYEVKAFDDYVLVTEPMKGRARQGLELKGQVFRITYRNPPNRTSLEVLENYRT
ALQAAGASEIFTCAHRACGGRDFNIAQVDPQNYTRMGDNYDDQRYLAARLQAPGKDVYVALFITRSQSGAAADKDRIFTQ
LHVIEVKSMDANMVVVDASRMADSIGKTGSVALYGILFDFNSAVIKPESKATLDEIASLLRKAPDLKLVVVGHTDNVGGM
DSNMKLSQARAEAVRRALVEQYAIAAARLQAWGAGFMAPVASNRTDEGRAKNRRVELVEQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=103, Percent_Identity=44.6601941747573, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787191, Length=113, Percent_Identity=36.283185840708, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 41719; Mature: 41587

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRPSGRPFALGKRGLGRSCVRAYDPLARLGRPRGRRRGFDVNCLKVLLMSVLICAACR
CCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LFRRDGVVSPLALFLLLLAAAAVPARAADVPGSRDYPGISRYAGSEIIRYEVKAFDDYVL
HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHEEEEEECCCCEEE
VTEPMKGRARQGLELKGQVFRITYRNPPNRTSLEVLENYRTALQAAGASEIFTCAHRACG
EECCCCCHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
GRDFNIAQVDPQNYTRMGDNYDDQRYLAARLQAPGKDVYVALFITRSQSGAAADKDRIFT
CCCCEEEEECCCHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHH
QLHVIEVKSMDANMVVVDASRMADSIGKTGSVALYGILFDFNSAVIKPESKATLDEIASL
EEEEEEEECCCCCEEEEEHHHHHHHHCCCCCEEEEEEEEECCCEEECCCCCCCHHHHHHH
LRKAPDLKLVVVGHTDNVGGMDSNMKLSQARAEAVRRALVEQYAIAAARLQAWGAGFMAP
HHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
VASNRTDEGRAKNRRVELVEQ
HCCCCCCCCHHCCCCEEEECC
>Mature Secondary Structure 
SGRPSGRPFALGKRGLGRSCVRAYDPLARLGRPRGRRRGFDVNCLKVLLMSVLICAACR
CCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LFRRDGVVSPLALFLLLLAAAAVPARAADVPGSRDYPGISRYAGSEIIRYEVKAFDDYVL
HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHEEEEEECCCCEEE
VTEPMKGRARQGLELKGQVFRITYRNPPNRTSLEVLENYRTALQAAGASEIFTCAHRACG
EECCCCCHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
GRDFNIAQVDPQNYTRMGDNYDDQRYLAARLQAPGKDVYVALFITRSQSGAAADKDRIFT
CCCCEEEEECCCHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHH
QLHVIEVKSMDANMVVVDASRMADSIGKTGSVALYGILFDFNSAVIKPESKATLDEIASL
EEEEEEEECCCCCEEEEEHHHHHHHHCCCCCEEEEEEEEECCCEEECCCCCCCHHHHHHH
LRKAPDLKLVVVGHTDNVGGMDSNMKLSQARAEAVRRALVEQYAIAAARLQAWGAGFMAP
HHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
VASNRTDEGRAKNRRVELVEQ
HCCCCCCCCHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]