Click here to switch to the map view.

The map label for this gene is mdcF [H]

Identifier: 158421997

GI number: 158421997

Start: 427508

End: 428446

Strand: Reverse

Name: mdcF [H]

Synonym: AZC_0373

Alternate gene names: 158421997

Gene position: 428446-427508 (Counterclockwise)

Preceding gene: 158421998

Following gene: 158421995

Centisome position: 7.98

GC content: 66.88

Gene sequence:

>939_bases
ATGCTGGGCATTCTCGCAGACCTTGCGCTCATCGTTCTTCCGGTCTTCGGGATTGTCGGCGTGGGATACGGGGCGGCAAA
GACCCGCCTCATCAGCGACAGCGCGTCCGACGGCCTCGCGGAATATGTGTTCAGCCTCGCGGTGCCGATCCTCATCTTCA
AGACGCTGAGCGAGAGCAAGCTGCCCGACGCCCAGCCCTGGGGCTACTGGATCGCCTATTTCACCGGCGCCTTCGCGGTC
TTCGCGCTGGCCGCCGTGGTGGCCGCGAAGGTGTTCAAGCGCTCGCACACGGAAGCCGTCATCCACGGCTTCTCGGCGGG
ACAGGCCAATACGGTCTTCGTCGGCGTGCCGCTGATCCTCAAGGCCTATGGCGAAGCCGGCGCGGTGCCGCTGTTCCTGC
TCATCGCCGTGCACCTGCCGGTAATGCTAGTGGCCGCCACCATCGCGGTGGAGGGCGGCTCCGGCTTCTCGCGGGCCACG
GTGAAGCGGCTGTTCCGCTCGCTCGCCTTCAATCCCATCCTGCTCGGCATCTATGCGGGCGGGATCGGGCGGCTCATGGG
CTTCGAGGCCCATGGGGTGCTGAAGCAGGTGCTGGACATGATGGCGGCCTCCGCCACGCCCTGCGCCCTCGTTTCCCTCG
GCCTCGCCCTCAAGCGCTACGGCATTTCCGGCGATCTGCGGCCCACCGTCTTCATCTCCACGCTGAAGCTCATCGTGCAT
CCGCTGCTGGTGCTGGGGCTCACCCGCATCCTGCCCATGCCGCCGGTGTGGGCGGGCGTGGCCGTGCTGTTCGCGGCCAT
GCCCTGCGGCATCAATGCCTATCTGCTGGCCCAGCGTTATGGCGTCGGCGTCGGCACCAGTTCCAGCTCCGTCTCGCTGT
CCACGGCCCTCGGCCTCTTCACCATCACCTTCTGGCTCTACGTGCTCGGGGTGGGCTGA

Upstream 100 bases:

>100_bases
CCGCCTCGAAAGCCGCCTGCGCGCCATGGTGCCGGTGTTCGACGTGGCCATGGCCTGCCTGCGGCCGGCACCCGTGCTCA
CCGCCGCCTGATCTCATTCC

Downstream 100 bases:

>100_bases
GACGCCGGCTCCAGCCCGTGTGCGATGAGCGCGCGCACCTCGTCCGGCGTGGTGCCGAGCGCGCGCAGGGACGACAGGCT
CGCCGCCCCCGTGCTTTTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MLGILADLALIVLPVFGIVGVGYGAAKTRLISDSASDGLAEYVFSLAVPILIFKTLSESKLPDAQPWGYWIAYFTGAFAV
FALAAVVAAKVFKRSHTEAVIHGFSAGQANTVFVGVPLILKAYGEAGAVPLFLLIAVHLPVMLVAATIAVEGGSGFSRAT
VKRLFRSLAFNPILLGIYAGGIGRLMGFEAHGVLKQVLDMMAASATPCALVSLGLALKRYGISGDLRPTVFISTLKLIVH
PLLVLGLTRILPMPPVWAGVAVLFAAMPCGINAYLLAQRYGVGVGTSSSSVSLSTALGLFTITFWLYVLGVG

Sequences:

>Translated_312_residues
MLGILADLALIVLPVFGIVGVGYGAAKTRLISDSASDGLAEYVFSLAVPILIFKTLSESKLPDAQPWGYWIAYFTGAFAV
FALAAVVAAKVFKRSHTEAVIHGFSAGQANTVFVGVPLILKAYGEAGAVPLFLLIAVHLPVMLVAATIAVEGGSGFSRAT
VKRLFRSLAFNPILLGIYAGGIGRLMGFEAHGVLKQVLDMMAASATPCALVSLGLALKRYGISGDLRPTVFISTLKLIVH
PLLVLGLTRILPMPPVWAGVAVLFAAMPCGINAYLLAQRYGVGVGTSSSSVSLSTALGLFTITFWLYVLGVG
>Mature_312_residues
MLGILADLALIVLPVFGIVGVGYGAAKTRLISDSASDGLAEYVFSLAVPILIFKTLSESKLPDAQPWGYWIAYFTGAFAV
FALAAVVAAKVFKRSHTEAVIHGFSAGQANTVFVGVPLILKAYGEAGAVPLFLLIAVHLPVMLVAATIAVEGGSGFSRAT
VKRLFRSLAFNPILLGIYAGGIGRLMGFEAHGVLKQVLDMMAASATPCALVSLGLALKRYGISGDLRPTVFISTLKLIVH
PLLVLGLTRILPMPPVWAGVAVLFAAMPCGINAYLLAQRYGVGVGTSSSSVSLSTALGLFTITFWLYVLGVG

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 32584; Mature: 32584

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGILADLALIVLPVFGIVGVGYGAAKTRLISDSASDGLAEYVFSLAVPILIFKTLSESK
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
LPDAQPWGYWIAYFTGAFAVFALAAVVAAKVFKRSHTEAVIHGFSAGQANTVFVGVPLIL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEEEHHHHH
KAYGEAGAVPLFLLIAVHLPVMLVAATIAVEGGSGFSRATVKRLFRSLAFNPILLGIYAG
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCHHHHHHHHH
GIGRLMGFEAHGVLKQVLDMMAASATPCALVSLGLALKRYGISGDLRPTVFISTLKLIVH
HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
PLLVLGLTRILPMPPVWAGVAVLFAAMPCGINAYLLAQRYGVGVGTSSSSVSLSTALGLF
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
TITFWLYVLGVG
HHHHHHHHHCCC
>Mature Secondary Structure
MLGILADLALIVLPVFGIVGVGYGAAKTRLISDSASDGLAEYVFSLAVPILIFKTLSESK
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
LPDAQPWGYWIAYFTGAFAVFALAAVVAAKVFKRSHTEAVIHGFSAGQANTVFVGVPLIL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEEEHHHHH
KAYGEAGAVPLFLLIAVHLPVMLVAATIAVEGGSGFSRATVKRLFRSLAFNPILLGIYAG
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCHHHHHHHHH
GIGRLMGFEAHGVLKQVLDMMAASATPCALVSLGLALKRYGISGDLRPTVFISTLKLIVH
HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
PLLVLGLTRILPMPPVWAGVAVLFAAMPCGINAYLLAQRYGVGVGTSSSSVSLSTALGLF
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
TITFWLYVLGVG
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]