| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is pbpG [H]
Identifier: 158421961
GI number: 158421961
Start: 389370
End: 391703
Strand: Reverse
Name: pbpG [H]
Synonym: AZC_0337
Alternate gene names: 158421961
Gene position: 391703-389370 (Counterclockwise)
Preceding gene: 158421963
Following gene: 158421957
Centisome position: 7.29
GC content: 69.11
Gene sequence:
>2334_bases ATGACGGGACTCTTCATGGCTGGGCGCGGAACGGGCGGGCAGGAACGGCGCGAACCCTCGATGCGCGCAGCATCGGGATC GCCCGAGCCGTCGTTCGACATCCGGCTCGATCCGGAAGACCGGCCGGGGGGCGGTCGCAAGCCTGCCCGCAAGGCGGACG CCGCCGGCGGGGGCCGGCCGGCACGGGACCAGCGCGCGCGCGTCGAGCCGAGCCTCGATGGCGACGCCGCGGAAAGCGAG GACATGGCCGCAGCCCCCCGCCGCAGCAAGACCGAGGGTTCGTCCCGAACCTCCAAGGGCTCCACCTCCTCGGGCGGCCG CGGCAAGGCGAAATCCGAGCGGCGCCGCAAGCGCGGCTTCTTCTCCCTGTTCGGCCTCATCAAGTGGCTGTTCATCCTGG GGCTGTGGGCGGCGGTTGGTGTGGGCGCGCTGGTGGCCTATGAGGCCTCCAAGCTGCCGCCCATGCAGACGCTGATGGTG CCCAAGCGCCCGCCCACCGTCATGATCCAGTCCTTCGACGGCAAGCCTCTGGCCACGCGCGGCGACATGGGCGGGGCGGC GGTGCCCATCAAGGAACTGCCCGCCTATCTGCCCAAGGCCTTCGTCGCCATCGAGGACCGGCGCTTCTACGACCATTTCG GCCTCGACATCTGGGGTCTTGCCCGCGCCATGGCCGCCAATGCCGTCTCCCGCCGCGTGCGGCAGGGCGGCTCCACGCTC ACCCAGCAGCTCGCCAAGAACCTCTTCCTCACGCAGGAGCGCACCTTCTCCCGCAAGATCCAGGAGCTGGTGCTGGCCCT GTGGCTGGAGAAGAAGTTCACCAAGACCGAGATCCTCGATCTCTATCTGAACCGCGTCTATTTCGGGAACGGCGCCTATG GCGTCGAGGCGGCGGCGCAGCGCTACTTCAACAAGTCGGCGCGCAACGTCACCCTGTCGGAGGCGGCCATGCTGGCGGGC CTCGTCAATGCCCCCTCGCGCCTTGCGCCCACGCGCAACCTCAAGGCCGCGCAGGACCGCGCCAATCTCGTGCTCGCCGC CATGCGCGAGCAGGGCTTCATCACCGAGGACATGGCGAAGGTGGCCCTCGCCCGCCCGGCGACGCTCGCCAAGCCCTCGA CGCCCGATTCCATCGGCTATGTGGCCGACTGGGTGATGGACCAGCTCGATTCCTACGTGGGCACGCTGCCCGGCGACGTG ATCGTGCGCACCACCATCGACCCCGTGCTCCAGCAGACGGCGCAGGCCTCGCTCACGGATGCGCTGAACAAGCAGGGCCA GAAATACGGCGTCGGTCAGGGCGCCGTGGTCTCGCTCGACACGGACGGGGCCGTGAAGGCGCTGGTGGGCGGGCGCTCCT ATGAGGACAGCCAGTACAACCGCGCCGTCACCGCGCGCCGTCAGCCGGGCTCCTCCTTCAAGCCCTTCATCTATCTCACC GCGCTGGAAAAGGGCCTGACTCCCGAGACGGTGCGCGAGGACGGGCCGATCCAGCTCAAGGGCTGGAAGCCGGAGAATGC CAGCCACCAGTATCTCGGCCCTGTTCAGCTCCAGCAGGCGCTCGCCATGTCGCTGAACACGGTCTCCGTGCGCCTCGCGC TGGAAGTGGGGCCGAAAGCGGTGGTGGCGACCGCCCACCGGCTCGGCATCACCTCGACGCTCGATCCGAACCCGTCCATC GCGCTCGGCACGTCGGAAGTCTCCGTGCTGGAGCTGGCCTCCGCTTACGTGCCCTTCGCCAATGGCGGCATCGGCGTCAT CCCCTACGTGATCGAGAGCGTGAAGGGACCGGATGGCAAGATGCTCTATTCCCGCTCCACCTCGGGGCCGGGGCGGGTCA TCGATCCGGCCTATGTGGGCATGATGAACCATATGCTGGAGCAGACCATCGCGGTGGGCACCGGCCGCCGCGCCGAGCTG CCCGGCTGGGATGCCGCCGGCAAGACCGGCACCTCGCAGGATTATCGCGACGCCTGGTTCGTGGGCTACACGGCCCGCAT CGTAACGGCGGTGTGGATCGGCAATGACGATTCCTCCCCCACCAAGAAGGCCTCAGGCGCCAATTTGCCGGCGGAGATCT GGAGCCGCTACATGAAGGTGGCCCACAAGGACCTGCCGCCCACCGAACTGCCCGGTGCCGGCCGCAGCTATGTGGCCTCC GGCACCTTCGGCTTCGGCCAGCAGGGCGGCATGCTGCCCCCCGGCCAGGTGCCGGACGAGGCGCCGCCGGCCATCGTCGG CAACCTCCCGCCCCAGCAGCCGCGCCCGCAGCAGGATGAGCCCATGACGCTCGACCGCTGGTTCGTGGACACCTTCCTCG GCGGCCGCAGGTGA
Upstream 100 bases:
>100_bases ACGCCCGCGCGGGAATTGCACCGGCATCGGGGATGATCGGGTAACCGAACCTTAAATGGCCGCAATCGAAGGTCTTTGAG GGTCTCCTCTCACGCAACGG
Downstream 100 bases:
>100_bases CCCGGCCACCTCGCACCACCGACGCCTTGCGAGGCGTCGGCAGCGGGGACGTCACCGGCTGCCGACGGCGAGGACGAAGC CCTTTTCCGTGAGCTGCATC
Product: penicillin-binding protein 1A
Products: NA
Alternate protein names: PBP-2D; PBP2d [H]
Number of amino acids: Translated: 777; Mature: 776
Protein sequence:
>777_residues MTGLFMAGRGTGGQERREPSMRAASGSPEPSFDIRLDPEDRPGGGRKPARKADAAGGGRPARDQRARVEPSLDGDAAESE DMAAAPRRSKTEGSSRTSKGSTSSGGRGKAKSERRRKRGFFSLFGLIKWLFILGLWAAVGVGALVAYEASKLPPMQTLMV PKRPPTVMIQSFDGKPLATRGDMGGAAVPIKELPAYLPKAFVAIEDRRFYDHFGLDIWGLARAMAANAVSRRVRQGGSTL TQQLAKNLFLTQERTFSRKIQELVLALWLEKKFTKTEILDLYLNRVYFGNGAYGVEAAAQRYFNKSARNVTLSEAAMLAG LVNAPSRLAPTRNLKAAQDRANLVLAAMREQGFITEDMAKVALARPATLAKPSTPDSIGYVADWVMDQLDSYVGTLPGDV IVRTTIDPVLQQTAQASLTDALNKQGQKYGVGQGAVVSLDTDGAVKALVGGRSYEDSQYNRAVTARRQPGSSFKPFIYLT ALEKGLTPETVREDGPIQLKGWKPENASHQYLGPVQLQQALAMSLNTVSVRLALEVGPKAVVATAHRLGITSTLDPNPSI ALGTSEVSVLELASAYVPFANGGIGVIPYVIESVKGPDGKMLYSRSTSGPGRVIDPAYVGMMNHMLEQTIAVGTGRRAEL PGWDAAGKTGTSQDYRDAWFVGYTARIVTAVWIGNDDSSPTKKASGANLPAEIWSRYMKVAHKDLPPTELPGAGRSYVAS GTFGFGQQGGMLPPGQVPDEAPPAIVGNLPPQQPRPQQDEPMTLDRWFVDTFLGGRR
Sequences:
>Translated_777_residues MTGLFMAGRGTGGQERREPSMRAASGSPEPSFDIRLDPEDRPGGGRKPARKADAAGGGRPARDQRARVEPSLDGDAAESE DMAAAPRRSKTEGSSRTSKGSTSSGGRGKAKSERRRKRGFFSLFGLIKWLFILGLWAAVGVGALVAYEASKLPPMQTLMV PKRPPTVMIQSFDGKPLATRGDMGGAAVPIKELPAYLPKAFVAIEDRRFYDHFGLDIWGLARAMAANAVSRRVRQGGSTL TQQLAKNLFLTQERTFSRKIQELVLALWLEKKFTKTEILDLYLNRVYFGNGAYGVEAAAQRYFNKSARNVTLSEAAMLAG LVNAPSRLAPTRNLKAAQDRANLVLAAMREQGFITEDMAKVALARPATLAKPSTPDSIGYVADWVMDQLDSYVGTLPGDV IVRTTIDPVLQQTAQASLTDALNKQGQKYGVGQGAVVSLDTDGAVKALVGGRSYEDSQYNRAVTARRQPGSSFKPFIYLT ALEKGLTPETVREDGPIQLKGWKPENASHQYLGPVQLQQALAMSLNTVSVRLALEVGPKAVVATAHRLGITSTLDPNPSI ALGTSEVSVLELASAYVPFANGGIGVIPYVIESVKGPDGKMLYSRSTSGPGRVIDPAYVGMMNHMLEQTIAVGTGRRAEL PGWDAAGKTGTSQDYRDAWFVGYTARIVTAVWIGNDDSSPTKKASGANLPAEIWSRYMKVAHKDLPPTELPGAGRSYVAS GTFGFGQQGGMLPPGQVPDEAPPAIVGNLPPQQPRPQQDEPMTLDRWFVDTFLGGRR >Mature_776_residues TGLFMAGRGTGGQERREPSMRAASGSPEPSFDIRLDPEDRPGGGRKPARKADAAGGGRPARDQRARVEPSLDGDAAESED MAAAPRRSKTEGSSRTSKGSTSSGGRGKAKSERRRKRGFFSLFGLIKWLFILGLWAAVGVGALVAYEASKLPPMQTLMVP KRPPTVMIQSFDGKPLATRGDMGGAAVPIKELPAYLPKAFVAIEDRRFYDHFGLDIWGLARAMAANAVSRRVRQGGSTLT QQLAKNLFLTQERTFSRKIQELVLALWLEKKFTKTEILDLYLNRVYFGNGAYGVEAAAQRYFNKSARNVTLSEAAMLAGL VNAPSRLAPTRNLKAAQDRANLVLAAMREQGFITEDMAKVALARPATLAKPSTPDSIGYVADWVMDQLDSYVGTLPGDVI VRTTIDPVLQQTAQASLTDALNKQGQKYGVGQGAVVSLDTDGAVKALVGGRSYEDSQYNRAVTARRQPGSSFKPFIYLTA LEKGLTPETVREDGPIQLKGWKPENASHQYLGPVQLQQALAMSLNTVSVRLALEVGPKAVVATAHRLGITSTLDPNPSIA LGTSEVSVLELASAYVPFANGGIGVIPYVIESVKGPDGKMLYSRSTSGPGRVIDPAYVGMMNHMLEQTIAVGTGRRAELP GWDAAGKTGTSQDYRDAWFVGYTARIVTAVWIGNDDSSPTKKASGANLPAEIWSRYMKVAHKDLPPTELPGAGRSYVASG TFGFGQQGGMLPPGQVPDEAPPAIVGNLPPQQPRPQQDEPMTLDRWFVDTFLGGRR
Specific function: Involved in the polymerization and cross-linking of spore peptidoglycan. May be required for synthesis of the spore germ cell wall, the first layer of peptidoglycan synthesized on the surface of the inner forespore membrane [H]
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=575, Percent_Identity=34.2608695652174, Blast_Score=251, Evalue=1e-67, Organism=Escherichia coli, GI1788867, Length=580, Percent_Identity=32.5862068965517, Blast_Score=206, Evalue=6e-54, Organism=Escherichia coli, GI87082258, Length=314, Percent_Identity=36.624203821656, Blast_Score=181, Evalue=2e-46, Organism=Escherichia coli, GI1789601, Length=165, Percent_Identity=38.7878787878788, Blast_Score=112, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.1.129; 3.4.-.- [C]
Molecular weight: Translated: 83549; Mature: 83418
Theoretical pI: Translated: 10.16; Mature: 10.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGLFMAGRGTGGQERREPSMRAASGSPEPSFDIRLDPEDRPGGGRKPARKADAAGGGRP CCCEEEECCCCCCHHHCCCCHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC ARDQRARVEPSLDGDAAESEDMAAAPRRSKTEGSSRTSKGSTSSGGRGKAKSERRRKRGF CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH FSLFGLIKWLFILGLWAAVGVGALVAYEASKLPPMQTLMVPKRPPTVMIQSFDGKPLATR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCEEEEECCCCCCCCCC GDMGGAAVPIKELPAYLPKAFVAIEDRRFYDHFGLDIWGLARAMAANAVSRRVRQGGSTL CCCCCCCCCHHHHHHHHHHHHEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH TQQLAKNLFLTQERTFSRKIQELVLALWLEKKFTKTEILDLYLNRVYFGNGAYGVEAAAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH RYFNKSARNVTLSEAAMLAGLVNAPSRLAPTRNLKAAQDRANLVLAAMREQGFITEDMAK HHHHHHHCCEEHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH VALARPATLAKPSTPDSIGYVADWVMDQLDSYVGTLPGDVIVRTTIDPVLQQTAQASLTD HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHH ALNKQGQKYGVGQGAVVSLDTDGAVKALVGGRSYEDSQYNRAVTARRQPGSSFKPFIYLT HHHHCCCEECCCCCCEEEECCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEE ALEKGLTPETVREDGPIQLKGWKPENASHQYLGPVQLQQALAMSLNTVSVRLALEVGPKA EHHCCCCHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCEEEEEEEEECCCCH VVATAHRLGITSTLDPNPSIALGTSEVSVLELASAYVPFANGGIGVIPYVIESVKGPDGK HHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC MLYSRSTSGPGRVIDPAYVGMMNHMLEQTIAVGTGRRAELPGWDAAGKTGTSQDYRDAWF EEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH VGYTARIVTAVWIGNDDSSPTKKASGANLPAEIWSRYMKVAHKDLPPTELPGAGRSYVAS HHHHEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEC GTFGFGQQGGMLPPGQVPDEAPPAIVGNLPPQQPRPQQDEPMTLDRWFVDTFLGGRR CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure TGLFMAGRGTGGQERREPSMRAASGSPEPSFDIRLDPEDRPGGGRKPARKADAAGGGRP CCEEEECCCCCCHHHCCCCHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC ARDQRARVEPSLDGDAAESEDMAAAPRRSKTEGSSRTSKGSTSSGGRGKAKSERRRKRGF CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH FSLFGLIKWLFILGLWAAVGVGALVAYEASKLPPMQTLMVPKRPPTVMIQSFDGKPLATR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCEEEEECCCCCCCCCC GDMGGAAVPIKELPAYLPKAFVAIEDRRFYDHFGLDIWGLARAMAANAVSRRVRQGGSTL CCCCCCCCCHHHHHHHHHHHHEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH TQQLAKNLFLTQERTFSRKIQELVLALWLEKKFTKTEILDLYLNRVYFGNGAYGVEAAAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH RYFNKSARNVTLSEAAMLAGLVNAPSRLAPTRNLKAAQDRANLVLAAMREQGFITEDMAK HHHHHHHCCEEHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH VALARPATLAKPSTPDSIGYVADWVMDQLDSYVGTLPGDVIVRTTIDPVLQQTAQASLTD HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHH ALNKQGQKYGVGQGAVVSLDTDGAVKALVGGRSYEDSQYNRAVTARRQPGSSFKPFIYLT HHHHCCCEECCCCCCEEEECCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEE ALEKGLTPETVREDGPIQLKGWKPENASHQYLGPVQLQQALAMSLNTVSVRLALEVGPKA EHHCCCCHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCEEEEEEEEECCCCH VVATAHRLGITSTLDPNPSIALGTSEVSVLELASAYVPFANGGIGVIPYVIESVKGPDGK HHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC MLYSRSTSGPGRVIDPAYVGMMNHMLEQTIAVGTGRRAELPGWDAAGKTGTSQDYRDAWF EEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH VGYTARIVTAVWIGNDDSSPTKKASGANLPAEIWSRYMKVAHKDLPPTELPGAGRSYVAS HHHHEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEC GTFGFGQQGGMLPPGQVPDEAPPAIVGNLPPQQPRPQQDEPMTLDRWFVDTFLGGRR CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]