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The map label for this gene is cycM [H]

Identifier: 158421760

GI number: 158421760

Start: 165098

End: 165661

Strand: Reverse

Name: cycM [H]

Synonym: AZC_0136

Alternate gene names: 158421760

Gene position: 165661-165098 (Counterclockwise)

Preceding gene: 158421763

Following gene: 158421759

Centisome position: 3.09

GC content: 66.84

Gene sequence:

>564_bases
ATGGATAGTTTTGAATTAAACAAGATCGCAGGCGCGGTGCTCGGCACGCTGACGTTGACGCTCGGCCTCGGCATCGTGTC
CGAAATCCTTTTCACGCCCGAGGCTCCGGCCAAGCCCGGCTACGAGATCGCGGTGCCGGAAGGCGGCGCGACCGGCCAGG
CGGCCCCCAAGGCGGCGGCCGAGGTGCCGATCGCCCAGTTGCTGCCCACCGCCTCCGTGGAGAAGGGAGCCAACGTCGCC
AAGCGTTGCGCCTCCTGCCACAATTTCGCGGAAGGTGCCGGTGCCAAGGTCGGCCCTGATCTCTATGGGGTGGTCGGCCG
CAAGAAGGCGAGCGTCGCGGGCTTTGCCTATTCCTCGGCCCTCCAGGGCAAGGGTGGCGACTGGTCCTTCGACGATCTCA
ACGCCTTCCTGACCAACCCGAAGGCCTATGTGCCCGGAACCGCCATGGCGTTCGCCGGCATTCCGAAGGAGAGCGAGCGG
GCGGACCTCATCGCCTATCTCAACACCCTCTCCCACAGCCCGCTGCCGCTGCCCAAGGCCGCCGACGCCGCACCGGCGAA
GTGA

Upstream 100 bases:

>100_bases
ATTAGTTCCAAGCTGCCGCCGCGTAAAACCGTGCGGCAAAGCCTGTTTGCACGCCCCGATCTCAGGCGAGGAATTAGGGC
TCCGGGGGAGCGAAGCGTCG

Downstream 100 bases:

>100_bases
GACCCCGGCGGGGCTGCTCTGCGGCACCGACCCGCCGCCTCACGCAAATGTCACAGCAGGCCGGCTCCGCGAGGAGACCG
GCCTTTTTCCTGTTCACGTG

Product: cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MDSFELNKIAGAVLGTLTLTLGLGIVSEILFTPEAPAKPGYEIAVPEGGATGQAAPKAAAEVPIAQLLPTASVEKGANVA
KRCASCHNFAEGAGAKVGPDLYGVVGRKKASVAGFAYSSALQGKGGDWSFDDLNAFLTNPKAYVPGTAMAFAGIPKESER
ADLIAYLNTLSHSPLPLPKAADAAPAK

Sequences:

>Translated_187_residues
MDSFELNKIAGAVLGTLTLTLGLGIVSEILFTPEAPAKPGYEIAVPEGGATGQAAPKAAAEVPIAQLLPTASVEKGANVA
KRCASCHNFAEGAGAKVGPDLYGVVGRKKASVAGFAYSSALQGKGGDWSFDDLNAFLTNPKAYVPGTAMAFAGIPKESER
ADLIAYLNTLSHSPLPLPKAADAAPAK
>Mature_187_residues
MDSFELNKIAGAVLGTLTLTLGLGIVSEILFTPEAPAKPGYEIAVPEGGATGQAAPKAAAEVPIAQLLPTASVEKGANVA
KRCASCHNFAEGAGAKVGPDLYGVVGRKKASVAGFAYSSALQGKGGDWSFDDLNAFLTNPKAYVPGTAMAFAGIPKESER
ADLIAYLNTLSHSPLPLPKAADAAPAK

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=97, Percent_Identity=47.4226804123711, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17539604, Length=109, Percent_Identity=45.8715596330275, Blast_Score=101, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17566554, Length=101, Percent_Identity=45.5445544554455, Blast_Score=92, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6320796, Length=97, Percent_Identity=48.4536082474227, Blast_Score=105, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6322508, Length=97, Percent_Identity=45.360824742268, Blast_Score=97, Evalue=1e-21,
Organism=Drosophila melanogaster, GI17137228, Length=103, Percent_Identity=50.4854368932039, Blast_Score=111, Evalue=3e-25,
Organism=Drosophila melanogaster, GI17137204, Length=103, Percent_Identity=44.6601941747573, Blast_Score=98, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 18967; Mature: 18967

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSFELNKIAGAVLGTLTLTLGLGIVSEILFTPEAPAKPGYEIAVPEGGATGQAAPKAAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCHHHH
EVPIAQLLPTASVEKGANVAKRCASCHNFAEGAGAKVGPDLYGVVGRKKASVAGFAYSSA
HCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
LQGKGGDWSFDDLNAFLTNPKAYVPGTAMAFAGIPKESERADLIAYLNTLSHSPLPLPKA
HCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
ADAAPAK
CCCCCCC
>Mature Secondary Structure
MDSFELNKIAGAVLGTLTLTLGLGIVSEILFTPEAPAKPGYEIAVPEGGATGQAAPKAAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCHHHH
EVPIAQLLPTASVEKGANVAKRCASCHNFAEGAGAKVGPDLYGVVGRKKASVAGFAYSSA
HCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
LQGKGGDWSFDDLNAFLTNPKAYVPGTAMAFAGIPKESERADLIAYLNTLSHSPLPLPKA
HCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
ADAAPAK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1657867; 12597275 [H]