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The map label for this gene is ydiU [C]

Identifier: 158338961

GI number: 158338961

Start: 5936260

End: 5937963

Strand: Direct

Name: ydiU [C]

Synonym: AM1_5878

Alternate gene names: 158338961

Gene position: 5936260-5937963 (Clockwise)

Preceding gene: 158338958

Following gene: 158338975

Centisome position: 91.27

GC content: 46.95

Gene sequence:

>1704_bases
ATGTCATATCCATCTAAAACATCTGCTGAGCCCTCTGTAACGACCTTCGATGAGTTTGTGCAATTGGCGGATTATTCTCT
GATGGACACCTTAAATGCCGATCCTGATGCCACGGTCGATGGCGATGATCACCGTGCCCGCCAGGTTTTTTCTGGCCATT
TCGTACCTGTGGCACCCAAGCCGCTTGCAGAAGCAGAATATGTAACCCATAGCAGCACTTTTTTTAAGGAGCTTGGGTTA
AGCAATGAGCTGGCGCTGAATGAAAAATTTCGCCATGTATTTTCGGGTGATATCACTGCTGCCCATGAGCCTATGCGTCA
GGTTGGCTGGGCGACGGGTTATGCACTGTCGATTCTTGGCACCGAATATACCCAACAATGTCCCTTCGGTACGGGTAACG
GCTATGGCGATGGTCGGGCGATATCCGTGTTTGAAGGAATCATCAATGGCCAACGCTGGGAAATGCAACTGAAAGGGGGT
GGCCCAACACCTTATTGCCGTGGCGGTGACGGGCGCGCAGTACTCCGTTCAAGTGTGCGTGAGTTTCTAGCACAAGAGTA
TATGCAGGCTTTAGGTGTGCCAACATCGCGTTCTTTGACCCTGTATGTTTCGAAATCTGAGACTGTTAAGCGGCCTTGGT
ATTCTCAAAACTCCTACTCCGCTGACCCAGATGTTTTGATGGACGATCCTGTGGCCATTTCAACTCGCGTTGCCCCTTCC
TTTTTGCGCGTGGGGCAGCTAGAGTTATTTGCCCGCCGCACTCGCAACAATGCTCATCCAAAAGCATTAGAAGAGTTGAG
CATGATCGTGTCCCATTTAATGGAGCGAGAATACAAAAGCGATATTAATCAAAACCTTGGTTTTGCTGATCAACTGGTTG
AGTTGGCTAAGCTATTTCGCCAGCGTCTTACGTCATTGGTGGCCAACTGGCTACGTGTTGGTTATTGCCAGGGTAACTTT
AATAGTGACAACTGCGCTGCTGGTGGCTTTACCCTCGACTATGGACCCTTTGGATTTTGTGAAGTTTTTGACCCTTGGTT
TCAACCTTGGACTGGCGGTGCCGAACAATTTTCATTCTTCTATCAGCCCATCGCAGCAGAAGCGAATTATTATATGTTTT
GGAAAGCGGTGAGACCGCTACTTGAAGAAGATGCTGATGCTTTAGAACAGTTCGACCAAGTAGGCCGTGGCTTTTCAGAA
GCCATGCAACAACAAGTCCAAAAAATGTGGGCAGCCAAACTTGGCTTGACTGAATTTAACCCACAGCTGTTAAAGACATT
AATTCAGTTAATGACTGACTCAGAGGTAGATTACACCATTTTCTTCCGGGAGTTATCCCACATACCTGAGGATATCTCAG
CATTGAAAAAGAGCTTCTACGGTAAAACGTCTCAACAACTCGATGAGCAATGGCAATCTTGGCTAAAAAGCTGGCGCGAC
CTCGTCATTAAGGACGGCAATTTGGCTGAGATATCAACAAATATGAAACTGACTAACCCAAAATACACATGGCGAGAGTG
GTTGATTGTCCCCGCCTACCAACAAGCTATGCAGGGTGACTACACATTAGTTAAAGAGCTGCAAGAAGTACTGAGCTATC
CCTATGATGAGCAATCGCAAGAAGTAGAAGATAAATACTATCGTCTAAGACCTAAGGCGTTTTTTAATGCTGGTGGTGTG
TCGCACTATAGCTGTTCATCTTGA

Upstream 100 bases:

>100_bases
CTTTCAGCTCTAGCCCCTTCATTTAGTTAATCGTTGCCATACGTCTACAAGGCCTAAAATTAAACATGAACCTTTCCCGA
TAATACCGACGCTAGCAACA

Downstream 100 bases:

>100_bases
TTTTTAATAACAACTGAAGAATTCGATTGTGCATCAACAAAGTGTGGGACAGGTGACTCAGTCTTGCCATCTCCAGGAAT
GTGCCGTTATGGAATCAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 566

Protein sequence:

>567_residues
MSYPSKTSAEPSVTTFDEFVQLADYSLMDTLNADPDATVDGDDHRARQVFSGHFVPVAPKPLAEAEYVTHSSTFFKELGL
SNELALNEKFRHVFSGDITAAHEPMRQVGWATGYALSILGTEYTQQCPFGTGNGYGDGRAISVFEGIINGQRWEMQLKGG
GPTPYCRGGDGRAVLRSSVREFLAQEYMQALGVPTSRSLTLYVSKSETVKRPWYSQNSYSADPDVLMDDPVAISTRVAPS
FLRVGQLELFARRTRNNAHPKALEELSMIVSHLMEREYKSDINQNLGFADQLVELAKLFRQRLTSLVANWLRVGYCQGNF
NSDNCAAGGFTLDYGPFGFCEVFDPWFQPWTGGAEQFSFFYQPIAAEANYYMFWKAVRPLLEEDADALEQFDQVGRGFSE
AMQQQVQKMWAAKLGLTEFNPQLLKTLIQLMTDSEVDYTIFFRELSHIPEDISALKKSFYGKTSQQLDEQWQSWLKSWRD
LVIKDGNLAEISTNMKLTNPKYTWREWLIVPAYQQAMQGDYTLVKELQEVLSYPYDEQSQEVEDKYYRLRPKAFFNAGGV
SHYSCSS

Sequences:

>Translated_567_residues
MSYPSKTSAEPSVTTFDEFVQLADYSLMDTLNADPDATVDGDDHRARQVFSGHFVPVAPKPLAEAEYVTHSSTFFKELGL
SNELALNEKFRHVFSGDITAAHEPMRQVGWATGYALSILGTEYTQQCPFGTGNGYGDGRAISVFEGIINGQRWEMQLKGG
GPTPYCRGGDGRAVLRSSVREFLAQEYMQALGVPTSRSLTLYVSKSETVKRPWYSQNSYSADPDVLMDDPVAISTRVAPS
FLRVGQLELFARRTRNNAHPKALEELSMIVSHLMEREYKSDINQNLGFADQLVELAKLFRQRLTSLVANWLRVGYCQGNF
NSDNCAAGGFTLDYGPFGFCEVFDPWFQPWTGGAEQFSFFYQPIAAEANYYMFWKAVRPLLEEDADALEQFDQVGRGFSE
AMQQQVQKMWAAKLGLTEFNPQLLKTLIQLMTDSEVDYTIFFRELSHIPEDISALKKSFYGKTSQQLDEQWQSWLKSWRD
LVIKDGNLAEISTNMKLTNPKYTWREWLIVPAYQQAMQGDYTLVKELQEVLSYPYDEQSQEVEDKYYRLRPKAFFNAGGV
SHYSCSS
>Mature_566_residues
SYPSKTSAEPSVTTFDEFVQLADYSLMDTLNADPDATVDGDDHRARQVFSGHFVPVAPKPLAEAEYVTHSSTFFKELGLS
NELALNEKFRHVFSGDITAAHEPMRQVGWATGYALSILGTEYTQQCPFGTGNGYGDGRAISVFEGIINGQRWEMQLKGGG
PTPYCRGGDGRAVLRSSVREFLAQEYMQALGVPTSRSLTLYVSKSETVKRPWYSQNSYSADPDVLMDDPVAISTRVAPSF
LRVGQLELFARRTRNNAHPKALEELSMIVSHLMEREYKSDINQNLGFADQLVELAKLFRQRLTSLVANWLRVGYCQGNFN
SDNCAAGGFTLDYGPFGFCEVFDPWFQPWTGGAEQFSFFYQPIAAEANYYMFWKAVRPLLEEDADALEQFDQVGRGFSEA
MQQQVQKMWAAKLGLTEFNPQLLKTLIQLMTDSEVDYTIFFRELSHIPEDISALKKSFYGKTSQQLDEQWQSWLKSWRDL
VIKDGNLAEISTNMKLTNPKYTWREWLIVPAYQQAMQGDYTLVKELQEVLSYPYDEQSQEVEDKYYRLRPKAFFNAGGVS
HYSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=434, Percent_Identity=30.8755760368664, Blast_Score=147, Evalue=2e-35,
Organism=Escherichia coli, GI1787999, Length=535, Percent_Identity=31.4018691588785, Blast_Score=177, Evalue=2e-45,
Organism=Saccharomyces cerevisiae, GI6325034, Length=317, Percent_Identity=29.6529968454259, Blast_Score=123, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 64359; Mature: 64228

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYPSKTSAEPSVTTFDEFVQLADYSLMDTLNADPDATVDGDDHRARQVFSGHFVPVAPK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
PLAEAEYVTHSSTFFKELGLSNELALNEKFRHVFSGDITAAHEPMRQVGWATGYALSILG
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHCHHHEECC
TEYTQQCPFGTGNGYGDGRAISVFEGIINGQRWEMQLKGGGPTPYCRGGDGRAVLRSSVR
CHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
EFLAQEYMQALGVPTSRSLTLYVSKSETVKRPWYSQNSYSADPDVLMDDPVAISTRVAPS
HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCEEEHHHCHH
FLRVGQLELFARRTRNNAHPKALEELSMIVSHLMEREYKSDINQNLGFADQLVELAKLFR
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
QRLTSLVANWLRVGYCQGNFNSDNCAAGGFTLDYGPFGFCEVFDPWFQPWTGGAEQFSFF
HHHHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCCHHHHHCHHHCCCCCCHHHHHHH
YQPIAAEANYYMFWKAVRPLLEEDADALEQFDQVGRGFSEAMQQQVQKMWAAKLGLTEFN
HHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
PQLLKTLIQLMTDSEVDYTIFFRELSHIPEDISALKKSFYGKTSQQLDEQWQSWLKSWRD
HHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LVIKDGNLAEISTNMKLTNPKYTWREWLIVPAYQQAMQGDYTLVKELQEVLSYPYDEQSQ
HEECCCCEEEEECCCEECCCCCCHHHHEEEHHHHHHHCCCHHHHHHHHHHHCCCCCCCHH
EVEDKYYRLRPKAFFNAGGVSHYSCSS
HHHHHHHHCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SYPSKTSAEPSVTTFDEFVQLADYSLMDTLNADPDATVDGDDHRARQVFSGHFVPVAPK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
PLAEAEYVTHSSTFFKELGLSNELALNEKFRHVFSGDITAAHEPMRQVGWATGYALSILG
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHCHHHEECC
TEYTQQCPFGTGNGYGDGRAISVFEGIINGQRWEMQLKGGGPTPYCRGGDGRAVLRSSVR
CHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
EFLAQEYMQALGVPTSRSLTLYVSKSETVKRPWYSQNSYSADPDVLMDDPVAISTRVAPS
HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCEEEHHHCHH
FLRVGQLELFARRTRNNAHPKALEELSMIVSHLMEREYKSDINQNLGFADQLVELAKLFR
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
QRLTSLVANWLRVGYCQGNFNSDNCAAGGFTLDYGPFGFCEVFDPWFQPWTGGAEQFSFF
HHHHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCCHHHHHCHHHCCCCCCHHHHHHH
YQPIAAEANYYMFWKAVRPLLEEDADALEQFDQVGRGFSEAMQQQVQKMWAAKLGLTEFN
HHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
PQLLKTLIQLMTDSEVDYTIFFRELSHIPEDISALKKSFYGKTSQQLDEQWQSWLKSWRD
HHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LVIKDGNLAEISTNMKLTNPKYTWREWLIVPAYQQAMQGDYTLVKELQEVLSYPYDEQSQ
HEECCCCEEEEECCCEECCCCCCHHHHEEEHHHHHHHCCCHHHHHHHHHHHCCCCCCCHH
EVEDKYYRLRPKAFFNAGGVSHYSCSS
HHHHHHHHCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA