| Definition | Acaryochloris marina MBIC11017 chromosome, complete genome. |
|---|---|
| Accession | NC_009925 |
| Length | 6,503,724 |
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The map label for this gene is bphP [H]
Identifier: 158338975
GI number: 158338975
Start: 5954224
End: 5956767
Strand: Direct
Name: bphP [H]
Synonym: AM1_5894
Alternate gene names: 158338975
Gene position: 5954224-5956767 (Clockwise)
Preceding gene: 158338961
Following gene: 158338976
Centisome position: 91.55
GC content: 48.78
Gene sequence:
>2544_bases ATGGAAATTAGAGAACTAGCGATTTCTAATTGCGATCGCGAGCCCGTTCATATTCCGGGTCGCATCCAAATCTTTGGGGC TCTGATTGCTACAGATAAGCATCTTGAGTCCATCACTCATGTTTCCAGTAATATCAGTGATTTTTTGGGAGTCACCCCTG CGGATGCTCTAGGACAATCTCTCAGTATTTTGCTGCCAGAAGAGGTGATTCATACCCTCAGAAATATCGCAGGCCATCCC ACCATCGCAACTCATCGGGAGCGAGCAGGGGTCTATCCACTCCATCAGTCCATGCTAGATATAAGTTTGCATCGATTGGG GCCTCATTTTCTAATTGAACTAGAGTCAGTTCCCTCGGCACAGCTCAACAGCCAATCCGCTTTTACTAAAATCCAAATGC TTCTGGCCCGTCTGCAAGATGAAACGGCAACCTCAGCCCTACTGCAACTAGCCGTCAAAGACTTGCAGCAAGTGACAGAG TTCGATCGAGTTATGGCGTATCAATTTCTACCCGATGGGGCTGGGGAAGTTGTCGCCGAAGCCATGGTAGATGAGTTGGA ACCCAATCTTGGCCTCAGATACCCCGCTTCAGATATCCCTCAACAGGTCCGTGGGATTGCCTTAAAGATGCCTATCCGTG CGATCTCCGATATTGATGCTCCCACCGCCGACTTAATTGCCGCCGATCCAACCGCAGATCCCCTAGACCTTACCCTGACC CATGTGCGGGCTGTATCTCCCATTCATCTGGAGTATTTAGCCAATATGGGGGTTCAATCCTCCATGAATGTGGCCATTAT TGTCCATAGGGAACTATGGGGGCTTTTTGCGTTTCACCACAACAGTGTCAAATTATTGCCCCCTGATTACCGATCCATCT GCGATTTGTTTGGCCAACTTTTTTCCCTCAAATTCCAGTTGGTTTTGGAAGAAGAGCGGTTCAATAACCGCAAACACATT ATTTCAGCGATCTCTCAGATCACCCAAAAACTGACGAGCAGTGGCAGTTTTACGCTAACCATACAAACTTTAGGGCCACA ACTCTGCTCCATGCTCTCGGCCCAGGGGTTGGCCGTTATTGACAAGCAAGAGATTCAAACCTATGGGGATGTTCCAGCGC TCGATATCATTCAAGAACTGGTTCATCAGGTTCAAACCCATCCCAGTCCTGAACTGGTGCCCCTAGAAAACCTATCCCAC CTCGACCGTATCGATGCAAACCAACTGGGTAAAACGGCCGGTGCCCTCTGCCTTGGTATATCCCCCCTCGACGAAGTCTT CGTTATTTTCTTTCGCAATGAAATTATCCATGAAGTTCGCTGGGCCGGATCGCCAGAAAAACAGATAGTCGAAGGGCCAA ACGGCCCCCGATTACTCCCCCGTTCCTCCTTTGCAGAGTATCGGGAAACGGTTGCAGGCCAATGCCAATCTTGGTCGTCC CTCGACACAGAAGCGGCCTTGGAATTGCGGACTGGGCTAATGCAGCTAGCGATCAGTCAAGGAGAAAACCAGCAGCAGGA ATGGTTAAGACAACAGCGACAACAAGATCTCTTAATTGCTGAACTTAACCACCGCGTTAAAAATATTCTGGCCTTAATCC GGTCCATCTCCCGCCAAACCCGCCACTCCACTACTTCCGTCGAGGAATATACCTTACTGTTAGACCGCCGCATTGAAGCT CTAGCCCATGCCCATGATTTGGTGTCTGGGCATGGCTTGGAATGGCCCAATCTACAAAACTTGTTAACAACTGGACTCCG GCCTTACCTAGCAAAACCCAAGCACCAAGTTAGTTTCTCTGGCCCAGAAGTGGGGTTAAAAGCCAACTTTGTTCCCATGT TTGCCTTAGTCATTCATGAACTGATGACGAACTCTGCCAAGTATGGGGCTTTATCAGTTCCTACCGGAAAAGTTGATGTC TGTTGGCGGGAACAGGATGGAGGGTTGGCATTTGATTGGGAGGAATCGGATGGACCGACCGTCTTGCCGCCCCAGCGTAA GGGGTTTGGACAGACGTTAATCGAGCGAGCAATACCGTTTGAGTTTGAAGGAGAGGCAACGCTTCGCTTCCTCCACACAG GCATTCAAGTCAATTTTTGGCTGCCTGCCCACCTGATCCTGCTCCAGAATGACCCATCAGAAATTTCCCCTCCTTCAATG TCCACCCCCCAGAACGAGGAGGAGCCTGACATTGCTCCTGGTACGGTTCTTCTTGTTGAAGACAACATGTTACTGGCCCT CGAAATGGAAAATCTTCTAGAGTCTTTAGGATTTAGCGATATAGATACGGCCCCCAGGGTCAAGCAGGCCATTAAACTCC TAGACCAAAAGCAATACATCATGGGTATATTAGACATCAACCTCAAGGACGAGAATAGCTTTGGCGTAGCAGAAGAACTG ATCAAGCGACGAATACCATTCCTATTTACGACTGGCTATAATTCCAAATTTACTCTTCCAGAATCTCTAGCCACAGTCCC CATGCTCAAGAAGCCCATTGATGGGAATCAATTAAACAACACCATTCATCAACTCTTAGCCTAA
Upstream 100 bases:
>100_bases AGTGGTAAGTATTTTTGCTCTTTGGCAAAAAAATAGATGTTCAATCGGTTCAGTTATCTTACTTATTTGAGGTTGCATTA TTGATGCATTCAGTTAAGGT
Downstream 100 bases:
>100_bases AAGGATCTGGACAATTGGCTAATATCCTGATATTTGAAGACGATTTAATACTGGCAGAGTCTTGGCACAAAACCCTTAGT GCTCAAGGGCACCAGGTTGA
Product: bacteriophytochrome
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 847; Mature: 847
Protein sequence:
>847_residues MEIRELAISNCDREPVHIPGRIQIFGALIATDKHLESITHVSSNISDFLGVTPADALGQSLSILLPEEVIHTLRNIAGHP TIATHRERAGVYPLHQSMLDISLHRLGPHFLIELESVPSAQLNSQSAFTKIQMLLARLQDETATSALLQLAVKDLQQVTE FDRVMAYQFLPDGAGEVVAEAMVDELEPNLGLRYPASDIPQQVRGIALKMPIRAISDIDAPTADLIAADPTADPLDLTLT HVRAVSPIHLEYLANMGVQSSMNVAIIVHRELWGLFAFHHNSVKLLPPDYRSICDLFGQLFSLKFQLVLEEERFNNRKHI ISAISQITQKLTSSGSFTLTIQTLGPQLCSMLSAQGLAVIDKQEIQTYGDVPALDIIQELVHQVQTHPSPELVPLENLSH LDRIDANQLGKTAGALCLGISPLDEVFVIFFRNEIIHEVRWAGSPEKQIVEGPNGPRLLPRSSFAEYRETVAGQCQSWSS LDTEAALELRTGLMQLAISQGENQQQEWLRQQRQQDLLIAELNHRVKNILALIRSISRQTRHSTTSVEEYTLLLDRRIEA LAHAHDLVSGHGLEWPNLQNLLTTGLRPYLAKPKHQVSFSGPEVGLKANFVPMFALVIHELMTNSAKYGALSVPTGKVDV CWREQDGGLAFDWEESDGPTVLPPQRKGFGQTLIERAIPFEFEGEATLRFLHTGIQVNFWLPAHLILLQNDPSEISPPSM STPQNEEEPDIAPGTVLLVEDNMLLALEMENLLESLGFSDIDTAPRVKQAIKLLDQKQYIMGILDINLKDENSFGVAEEL IKRRIPFLFTTGYNSKFTLPESLATVPMLKKPIDGNQLNNTIHQLLA
Sequences:
>Translated_847_residues MEIRELAISNCDREPVHIPGRIQIFGALIATDKHLESITHVSSNISDFLGVTPADALGQSLSILLPEEVIHTLRNIAGHP TIATHRERAGVYPLHQSMLDISLHRLGPHFLIELESVPSAQLNSQSAFTKIQMLLARLQDETATSALLQLAVKDLQQVTE FDRVMAYQFLPDGAGEVVAEAMVDELEPNLGLRYPASDIPQQVRGIALKMPIRAISDIDAPTADLIAADPTADPLDLTLT HVRAVSPIHLEYLANMGVQSSMNVAIIVHRELWGLFAFHHNSVKLLPPDYRSICDLFGQLFSLKFQLVLEEERFNNRKHI ISAISQITQKLTSSGSFTLTIQTLGPQLCSMLSAQGLAVIDKQEIQTYGDVPALDIIQELVHQVQTHPSPELVPLENLSH LDRIDANQLGKTAGALCLGISPLDEVFVIFFRNEIIHEVRWAGSPEKQIVEGPNGPRLLPRSSFAEYRETVAGQCQSWSS LDTEAALELRTGLMQLAISQGENQQQEWLRQQRQQDLLIAELNHRVKNILALIRSISRQTRHSTTSVEEYTLLLDRRIEA LAHAHDLVSGHGLEWPNLQNLLTTGLRPYLAKPKHQVSFSGPEVGLKANFVPMFALVIHELMTNSAKYGALSVPTGKVDV CWREQDGGLAFDWEESDGPTVLPPQRKGFGQTLIERAIPFEFEGEATLRFLHTGIQVNFWLPAHLILLQNDPSEISPPSM STPQNEEEPDIAPGTVLLVEDNMLLALEMENLLESLGFSDIDTAPRVKQAIKLLDQKQYIMGILDINLKDENSFGVAEEL IKRRIPFLFTTGYNSKFTLPESLATVPMLKKPIDGNQLNNTIHQLLA >Mature_847_residues MEIRELAISNCDREPVHIPGRIQIFGALIATDKHLESITHVSSNISDFLGVTPADALGQSLSILLPEEVIHTLRNIAGHP TIATHRERAGVYPLHQSMLDISLHRLGPHFLIELESVPSAQLNSQSAFTKIQMLLARLQDETATSALLQLAVKDLQQVTE FDRVMAYQFLPDGAGEVVAEAMVDELEPNLGLRYPASDIPQQVRGIALKMPIRAISDIDAPTADLIAADPTADPLDLTLT HVRAVSPIHLEYLANMGVQSSMNVAIIVHRELWGLFAFHHNSVKLLPPDYRSICDLFGQLFSLKFQLVLEEERFNNRKHI ISAISQITQKLTSSGSFTLTIQTLGPQLCSMLSAQGLAVIDKQEIQTYGDVPALDIIQELVHQVQTHPSPELVPLENLSH LDRIDANQLGKTAGALCLGISPLDEVFVIFFRNEIIHEVRWAGSPEKQIVEGPNGPRLLPRSSFAEYRETVAGQCQSWSS LDTEAALELRTGLMQLAISQGENQQQEWLRQQRQQDLLIAELNHRVKNILALIRSISRQTRHSTTSVEEYTLLLDRRIEA LAHAHDLVSGHGLEWPNLQNLLTTGLRPYLAKPKHQVSFSGPEVGLKANFVPMFALVIHELMTNSAKYGALSVPTGKVDV CWREQDGGLAFDWEESDGPTVLPPQRKGFGQTLIERAIPFEFEGEATLRFLHTGIQVNFWLPAHLILLQNDPSEISPPSM STPQNEEEPDIAPGTVLLVEDNMLLALEMENLLESLGFSDIDTAPRVKQAIKLLDQKQYIMGILDINLKDENSFGVAEEL IKRRIPFLFTTGYNSKFTLPESLATVPMLKKPIDGNQLNNTIHQLLA
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 94173; Mature: 94173
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIRELAISNCDREPVHIPGRIQIFGALIATDKHLESITHVSSNISDFLGVTPADALGQS CCHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC LSILLPEEVIHTLRNIAGHPTIATHRERAGVYPLHQSMLDISLHRLGPHFLIELESVPSA CEEECCHHHHHHHHHHCCCCCEECCHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC QLNSQSAFTKIQMLLARLQDETATSALLQLAVKDLQQVTEFDRVMAYQFLPDGAGEVVAE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH AMVDELEPNLGLRYPASDIPQQVRGIALKMPIRAISDIDAPTADLIAADPTADPLDLTLT HHHHHCCCCCCCCCCCHHHHHHHHCEEHCCCHHHHHCCCCCCHHEEECCCCCCCHHHHHH HVRAVSPIHLEYLANMGVQSSMNVAIIVHRELWGLFAFHHNSVKLLPPDYRSICDLFGQL HHHHCCCHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHEECCCEEECCCCHHHHHHHHHHH FSLKFQLVLEEERFNNRKHIISAISQITQKLTSSGSFTLTIQTLGPQLCSMLSAQGLAVI HHHHHHEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEE DKQEIQTYGDVPALDIIQELVHQVQTHPSPELVPLENLSHLDRIDANQLGKTAGALCLGI EHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHCCHHHHHHHHHHHEECC SPLDEVFVIFFRNEIIHEVRWAGSPEKQIVEGPNGPRLLPRSSFAEYRETVAGQCQSWSS CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC LDTEAALELRTGLMQLAISQGENQQQEWLRQQRQQDLLIAELNHRVKNILALIRSISRQT CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHSTTSVEEYTLLLDRRIEALAHAHDLVSGHGLEWPNLQNLLTTGLRPYLAKPKHQVSFS HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHCCCCCEEECC GPEVGLKANFVPMFALVIHELMTNSAKYGALSVPTGKVDVCWREQDGGLAFDWEESDGPT CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCCCEEEEECCCCCCE VLPPQRKGFGQTLIERAIPFEFEGEATLRFLHTGIQVNFWLPAHLILLQNDPSEISPPSM ECCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEECEEEEEEECCCCCCCCCCC STPQNEEEPDIAPGTVLLVEDNMLLALEMENLLESLGFSDIDTAPRVKQAIKLLDQKQYI CCCCCCCCCCCCCCEEEEEECCEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHE MGILDINLKDENSFGVAEELIKRRIPFLFTTGYNSKFTLPESLATVPMLKKPIDGNQLNN EEEEEEEECCCCCCCHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHH TIHQLLA HHHHHHC >Mature Secondary Structure MEIRELAISNCDREPVHIPGRIQIFGALIATDKHLESITHVSSNISDFLGVTPADALGQS CCHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC LSILLPEEVIHTLRNIAGHPTIATHRERAGVYPLHQSMLDISLHRLGPHFLIELESVPSA CEEECCHHHHHHHHHHCCCCCEECCHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC QLNSQSAFTKIQMLLARLQDETATSALLQLAVKDLQQVTEFDRVMAYQFLPDGAGEVVAE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH AMVDELEPNLGLRYPASDIPQQVRGIALKMPIRAISDIDAPTADLIAADPTADPLDLTLT HHHHHCCCCCCCCCCCHHHHHHHHCEEHCCCHHHHHCCCCCCHHEEECCCCCCCHHHHHH HVRAVSPIHLEYLANMGVQSSMNVAIIVHRELWGLFAFHHNSVKLLPPDYRSICDLFGQL HHHHCCCHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHEECCCEEECCCCHHHHHHHHHHH FSLKFQLVLEEERFNNRKHIISAISQITQKLTSSGSFTLTIQTLGPQLCSMLSAQGLAVI HHHHHHEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEE DKQEIQTYGDVPALDIIQELVHQVQTHPSPELVPLENLSHLDRIDANQLGKTAGALCLGI EHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHCCHHHHHHHHHHHEECC SPLDEVFVIFFRNEIIHEVRWAGSPEKQIVEGPNGPRLLPRSSFAEYRETVAGQCQSWSS CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC LDTEAALELRTGLMQLAISQGENQQQEWLRQQRQQDLLIAELNHRVKNILALIRSISRQT CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHSTTSVEEYTLLLDRRIEALAHAHDLVSGHGLEWPNLQNLLTTGLRPYLAKPKHQVSFS HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHCCCCCEEECC GPEVGLKANFVPMFALVIHELMTNSAKYGALSVPTGKVDVCWREQDGGLAFDWEESDGPT CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCCCEEEEECCCCCCE VLPPQRKGFGQTLIERAIPFEFEGEATLRFLHTGIQVNFWLPAHLILLQNDPSEISPPSM ECCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEECEEEEEEECCCCCCCCCCC STPQNEEEPDIAPGTVLLVEDNMLLALEMENLLESLGFSDIDTAPRVKQAIKLLDQKQYI CCCCCCCCCCCCCCEEEEEECCEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHE MGILDINLKDENSFGVAEELIKRRIPFLFTTGYNSKFTLPESLATVPMLKKPIDGNQLNN EEEEEEEECCCCCCCHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHH TIHQLLA HHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]