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The map label for this gene is aapJ [H]

Identifier: 158338716

GI number: 158338716

Start: 5684804

End: 5685835

Strand: Direct

Name: aapJ [H]

Synonym: AM1_5624

Alternate gene names: 158338716

Gene position: 5684804-5685835 (Clockwise)

Preceding gene: 158338715

Following gene: 158338719

Centisome position: 87.41

GC content: 49.81

Gene sequence:

>1032_bases
ATGATCAGAAAATTTTCTTCTCTTTGTGCAGCTCTTCTGGTCGCATTGACCTTGGGGAGCTGTAGTAGTTCTGAAGCTGC
TGGAGGCCGGTTGCAGCAGGTGCTAGCTCAGAAGAAGGTGCGCTGTGGTATCAGCGGCGAGTTGCCGGGCTTTAGCTTTG
TGGATGAAAAAGGCAACTATTCGGGATTAGATGTGGATATCTGTCGTGCGATCGCAGCTGCGTTATTTGATGATCCTGAT
GCGGTGGAGTATCGTCCCTTAAATGCAAAAGAGCGATTTGCTGCAGTTCAGACTGGGGAGGTGGATGTTCTCAGCCGGAA
TACAACTTGGACTCTTGATCGAGACAGTTCGGTGCGGATGGCGTTTGCACCTGTGGTGTTTTATGACGGTCAGGGGGTAA
TGGTCAAAGCAGATAGCGGTATCAAGACCCTCAAGGATTTCAAAAATCGGACGGTTTGTACTCAGACTGGCACCACCAAC
GAGAAGAATTTAAAGGATCAAATGCGGAAGCGTAAGGTGGACTATAAGCTTGTGGTTTATGAAGATATTAACTCTGCCTA
TGCTGCCTATGCGGAAGGCCGCTGTGACGGGGTGACCTCTGATCGATCGCAGCTGATCTCCCGTCGAACGGCTCTACCCA
AGCCTGAAAGCCATACCATTCTAGATGAGGTTCTATCCAAAGAACCCCTAGCCCCTGCGGTTGCAGATGGAGATGTGGAA
TGGGCCGATGTGGTCCGTTGGGTGGTCAATGCCACGGTTGAAGCGGAAGAGCTGGGAATTCAACAAGATAATTTAGCGTC
TTTTGCTAAAAGTGAGGATCCCGTCGTTAAGCGCTTTTTGGGCACGGAAGAGGAATTGGGGAAAAGTTTGGGCCTCAGCC
CAGACTTCGCTGCCAGAATCGTCAAGCATGTGGGCAACTATGGCGAAATTTACGATCGCAATTTGGGGCCAAACACTAAA
CTGAATTTACCCAGGGGCCAAAACCAACTGTGGAGTAAAGGTGGATTGATGTATTCTCCCCCATTTCGCTAG

Upstream 100 bases:

>100_bases
CTAAGATTTTCTGGGATTTAAGGTTGTAGGCTAAGGGGGGACCTATAGGGATGGTTGTCCTGAACGGAAAGTCTATCGAA
CGTACGCACGACATCAATTT

Downstream 100 bases:

>100_bases
TTGGAGAGTTGAGGATTTTTAGGACGATAAGCAGAAAATCCCGTTCGGAGTTTTCCTAGGATCCTCTGGTGAAAGCCTGA
GTTTCTAGGAGTAAAGTTCT

Product: lysine-arginine-ornithine-binding periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MIRKFSSLCAALLVALTLGSCSSSEAAGGRLQQVLAQKKVRCGISGELPGFSFVDEKGNYSGLDVDICRAIAAALFDDPD
AVEYRPLNAKERFAAVQTGEVDVLSRNTTWTLDRDSSVRMAFAPVVFYDGQGVMVKADSGIKTLKDFKNRTVCTQTGTTN
EKNLKDQMRKRKVDYKLVVYEDINSAYAAYAEGRCDGVTSDRSQLISRRTALPKPESHTILDEVLSKEPLAPAVADGDVE
WADVVRWVVNATVEAEELGIQQDNLASFAKSEDPVVKRFLGTEEELGKSLGLSPDFAARIVKHVGNYGEIYDRNLGPNTK
LNLPRGQNQLWSKGGLMYSPPFR

Sequences:

>Translated_343_residues
MIRKFSSLCAALLVALTLGSCSSSEAAGGRLQQVLAQKKVRCGISGELPGFSFVDEKGNYSGLDVDICRAIAAALFDDPD
AVEYRPLNAKERFAAVQTGEVDVLSRNTTWTLDRDSSVRMAFAPVVFYDGQGVMVKADSGIKTLKDFKNRTVCTQTGTTN
EKNLKDQMRKRKVDYKLVVYEDINSAYAAYAEGRCDGVTSDRSQLISRRTALPKPESHTILDEVLSKEPLAPAVADGDVE
WADVVRWVVNATVEAEELGIQQDNLASFAKSEDPVVKRFLGTEEELGKSLGLSPDFAARIVKHVGNYGEIYDRNLGPNTK
LNLPRGQNQLWSKGGLMYSPPFR
>Mature_343_residues
MIRKFSSLCAALLVALTLGSCSSSEAAGGRLQQVLAQKKVRCGISGELPGFSFVDEKGNYSGLDVDICRAIAAALFDDPD
AVEYRPLNAKERFAAVQTGEVDVLSRNTTWTLDRDSSVRMAFAPVVFYDGQGVMVKADSGIKTLKDFKNRTVCTQTGTTN
EKNLKDQMRKRKVDYKLVVYEDINSAYAAYAEGRCDGVTSDRSQLISRRTALPKPESHTILDEVLSKEPLAPAVADGDVE
WADVVRWVVNATVEAEELGIQQDNLASFAKSEDPVVKRFLGTEEELGKSLGLSPDFAARIVKHVGNYGEIYDRNLGPNTK
LNLPRGQNQLWSKGGLMYSPPFR

Specific function: Part of a binding-protein-dependent transport system for L-amino acids, affects the uptake as well as efflux of these amino acids [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005768
- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 37642; Mature: 37642

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKFSSLCAALLVALTLGSCSSSEAAGGRLQQVLAQKKVRCGISGELPGFSFVDEKGNY
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCC
SGLDVDICRAIAAALFDDPDAVEYRPLNAKERFAAVQTGEVDVLSRNTTWTLDRDSSVRM
CCCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHEEECCCEEEEECCCEEEECCCCCCEE
AFAPVVFYDGQGVMVKADSGIKTLKDFKNRTVCTQTGTTNEKNLKDQMRKRKVDYKLVVY
EEEEEEEECCCEEEEECCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEE
EDINSAYAAYAEGRCDGVTSDRSQLISRRTALPKPESHTILDEVLSKEPLAPAVADGDVE
ECCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
WADVVRWVVNATVEAEELGIQQDNLASFAKSEDPVVKRFLGTEEELGKSLGLSPDFAARI
HHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHCCCCHHHHHHH
VKHVGNYGEIYDRNLGPNTKLNLPRGQNQLWSKGGLMYSPPFR
HHHCCCCHHHHCCCCCCCCEEECCCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MIRKFSSLCAALLVALTLGSCSSSEAAGGRLQQVLAQKKVRCGISGELPGFSFVDEKGNY
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCC
SGLDVDICRAIAAALFDDPDAVEYRPLNAKERFAAVQTGEVDVLSRNTTWTLDRDSSVRM
CCCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHEEECCCEEEEECCCEEEECCCCCCEE
AFAPVVFYDGQGVMVKADSGIKTLKDFKNRTVCTQTGTTNEKNLKDQMRKRKVDYKLVVY
EEEEEEEECCCEEEEECCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEE
EDINSAYAAYAEGRCDGVTSDRSQLISRRTALPKPESHTILDEVLSKEPLAPAVADGDVE
ECCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
WADVVRWVVNATVEAEELGIQQDNLASFAKSEDPVVKRFLGTEEELGKSLGLSPDFAARI
HHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHCCCCHHHHHHH
VKHVGNYGEIYDRNLGPNTKLNLPRGQNQLWSKGGLMYSPPFR
HHHCCCCHHHHCCCCCCCCEEECCCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8898392 [H]