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The map label for this gene is rcaC [H]

Identifier: 158338636

GI number: 158338636

Start: 5588625

End: 5589302

Strand: Reverse

Name: rcaC [H]

Synonym: AM1_5540

Alternate gene names: 158338636

Gene position: 5589302-5588625 (Counterclockwise)

Preceding gene: 158338637

Following gene: 158338635

Centisome position: 85.94

GC content: 44.25

Gene sequence:

>678_bases
ATGAAGCTTCTACTAGTAGAAGATGACGAGCGAATTGCAGAAGCATTGGCAGAAGATCTGACGGATCAGCATTATGCAGT
AGATATTGCCCATGACGGGGAAATGGGCTGGGAACTACTAGAGGCGTTTACCTATGACTTGGTTTTGCTCGATGTGATGT
TGCCTAAAATGGATGGTTTGGCCTTTTGTCGACAGATGAGAGCACAAGGTTTGGATATTCCTGTATTGATGCTGACGGCT
CGAGATACCACGGCCAATAAAGTCGATGGTCTAGACGCAGGTGCCGATGATTATGTCGTCAAACCTTGTGAGTTAGAGGA
AATATCTGCTAGGATTCGAGCCCTTTTGCGTCGGGGTCCCATGACCTCGCCACCTATCCTGGAATGGGAGGATCTAAAGT
TAAATCCCAATACCTGTGAGGTCTTTTTTCAAGAAGAGATAATTGCTTTGACACCCAAAGAATATAGTCTATTGGAGCTT
TTTTTAAGAAACAAGCGTCGAGTATTCAGTCGAGCCCAAATCCTGGAACATCTTTGGGCTTATGAAGTTTTACCTGAAGA
AGATACGGTGAAAGCCCATATCAAAGGGTTACGGCATAAATTGAAAGGGGCAGGAGCCCCCAATGATTTAATTCAAACGG
TCTATGGTTTTGGCTATCGTCTTAAACAGGTTTCGTAA

Upstream 100 bases:

>100_bases
TACGGCACACCCAGTTTGCCGTAATGTTTTCTGTATGGGACATCTGATGAGTAGCTAGATCTTCCCCATTTGGTATTGAG
ACAAAGAGAGAAAAATCAGA

Downstream 100 bases:

>100_bases
TCCTCTCTTTCAAGGATTACGGTGGCGTTTACTGCTGTCTTACCTCTTGGTTATGGCAGCAATATTGGCCGTTTTTAGCG
TACAAGTCTATGTTTTCGTT

Product: two-component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MKLLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVMLPKMDGLAFCRQMRAQGLDIPVLMLTA
RDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRGPMTSPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLEL
FLRNKRRVFSRAQILEHLWAYEVLPEEDTVKAHIKGLRHKLKGAGAPNDLIQTVYGFGYRLKQVS

Sequences:

>Translated_225_residues
MKLLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVMLPKMDGLAFCRQMRAQGLDIPVLMLTA
RDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRGPMTSPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLEL
FLRNKRRVFSRAQILEHLWAYEVLPEEDTVKAHIKGLRHKLKGAGAPNDLIQTVYGFGYRLKQVS
>Mature_225_residues
MKLLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVMLPKMDGLAFCRQMRAQGLDIPVLMLTA
RDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRGPMTSPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLEL
FLRNKRRVFSRAQILEHLWAYEVLPEEDTVKAHIKGLRHKLKGAGAPNDLIQTVYGFGYRLKQVS

Specific function: Required for chromatic adaptation. Thought to be a positive regulator of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 response regulatory domains [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=223, Percent_Identity=39.9103139013453, Blast_Score=153, Evalue=8e-39,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=38.9380530973451, Blast_Score=150, Evalue=5e-38,
Organism=Escherichia coli, GI1786599, Length=224, Percent_Identity=37.9464285714286, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=41.1764705882353, Blast_Score=147, Evalue=5e-37,
Organism=Escherichia coli, GI1789809, Length=225, Percent_Identity=34.2222222222222, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788394, Length=224, Percent_Identity=34.8214285714286, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=33.7899543378995, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI87082012, Length=224, Percent_Identity=35.7142857142857, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1790860, Length=220, Percent_Identity=35.9090909090909, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI2367329, Length=232, Percent_Identity=36.2068965517241, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=34.375, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787229, Length=227, Percent_Identity=32.5991189427313, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790863, Length=230, Percent_Identity=29.1304347826087, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI145693140, Length=229, Percent_Identity=26.6375545851528, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1788550, Length=108, Percent_Identity=30.5555555555556, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790437, Length=116, Percent_Identity=32.7586206896552, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994928, Length=120, Percent_Identity=34.1666666666667, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR008207
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01627 Hpt; PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25642; Mature: 25642

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVMLPKMDGL
CEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHH
AFCRQMRAQGLDIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRGP
HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCC
MTSPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLELFLRNKRRVFSRAQILEHLWA
CCCCCCCCCCCCEECCCCEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEVLPEEDTVKAHIKGLRHKLKGAGAPNDLIQTVYGFGYRLKQVS
HHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEECCC
>Mature Secondary Structure
MKLLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVMLPKMDGL
CEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHH
AFCRQMRAQGLDIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRGP
HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCC
MTSPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLELFLRNKRRVFSRAQILEHLWA
CCCCCCCCCCCCEECCCCEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEVLPEEDTVKAHIKGLRHKLKGAGAPNDLIQTVYGFGYRLKQVS
HHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1409650 [H]