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The map label for this gene is ydiU [C]

Identifier: 158338605

GI number: 158338605

Start: 5558642

End: 5560075

Strand: Direct

Name: ydiU [C]

Synonym: AM1_5509

Alternate gene names: 158338605

Gene position: 5558642-5560075 (Clockwise)

Preceding gene: 158338604

Following gene: 158338608

Centisome position: 85.47

GC content: 50.49

Gene sequence:

>1434_bases
ATGTCGACCCCATCCACCACGAACCTACTGCTTAACTTAGCGTTTGAACCGGCCTTGGAAGCGCTGGGCGAAGGATTTTA
CGATCCAGTTATGGCAGCTGAGTTTCCCCATCATCTCTTGCGATTTCGCAATGATGATGTTCTGGGTCAAATGGGTCTGG
ATGCGAACCAGGTGAATGATATCGATTTTGTGGAAGCCTACGGGCAGTTTCAGAGTCGAGAACCTTTGCTAGCTCTTTGC
TATCACGGTTATCAGTTTGGGGACTACAATCCCCGCTTAGGGGATGGGCGCGGCTTTCTATACGGCCAGGTCCGTGGAAC
CGATGGCGAACTTTATGATCTGGGCACTAAGGGATCCGGAACGACGCCTTATTCCCGAAGTGCAGACGGTCGCTTAACCC
TAAAGGGGGGGGTTCGAGAAGTGTTGGCAGCAGAAGCCCTGCACCATTTGGGGGTGCGGACCTCTCGCTGCTTGAGTTTA
ATTGAGACGGGAGAATCTTTATGGCGGGGAGATGAACCTTCACCGACTCGTTCTTCAGTAATGGTGCGGTTTAGTCGGTC
CCATATCCGCTTTGGCACCTTTGAGCGGTTATTGGCCCTGCAGCGACCTGACATGATCCAGCAATTACTGGATCATGTGA
TCCAGTATTACTATCCTCACCTATGGCAACAACCCGATGCCTATGCTCGCTTTTATGCAGAGTTGGTCCAACGGACTGCG
GCGTTAGTCGGCCAATGGATGTCTGTGGGGTTTTGCCATGCGGTCTTAAACACGGACAATATGTCAATTACAGGGGAAAG
CTTTGACTATGGCCCCTATGCCTTTATTCAAACCCTAGACCCTGACTTTACCGCTGCCTATTTTGATCATTTCCGGCGCT
ACAGCTATGGCAACCAGCCCGGTATGTGTCATTGGAATTTGGAGATGTTGCAGCGTCCCCTGGTGGCTGTAATTCCTCAG
GCTGATTTAGATGCAGGGCTTGAAACGTTTAAATCCCATTACTATTCGGCCTATCGACAGCGGATGCTGGGGAAGTTGGG
GTTTGAACCCACGGAAATGTCAGAAGCGGAAGATTTGTTGGTACAGACTTTGGATTTTTTGCAGCGATCGCAAGTTGGAT
ACCATGCGTTCTTTGCTGAATTACGGCTGCAATTCCAAGAGACCTGGCGCGTTGACCCAGGCCATATTTTTAGTGAATCA
GAGCTTCTAAGCCCGCCCCAATGGCAAGATCAATTGGAGACATGGCGGCAGCTTTATCATCGGCTGCTTCAGCAATACCC
TGAGACTGAGTTAGCTGCTATCAAGCAACGCTTGCAGCGCAATCCCCGGACGGTGATTACCCGTCCTCAAATTGAAGCTA
TTTGGGAGCCAATCATGATAGAAGATGATTGGCAACCCTTCTATGACTTACTGCAGCACCTGCGTCAGCCTTAA

Upstream 100 bases:

>100_bases
CAATAACGCCATCCAACGCTTAAGTAAAGGGATGATGCCTGGTGTCAATTGAGATGGGCTCACCTTCTCTTAGCTTCAAC
GGCCCTCATGTGCGCAATTC

Downstream 100 bases:

>100_bases
AGAGTGAGGTTAGTTAATGCGTACTAACCGAATTTCGGTGCGTTGATTGCGAGCATCACTAGGTGGAATGCCCGGTAACG
GTGCACTGAACCCCTTCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MSTPSTTNLLLNLAFEPALEALGEGFYDPVMAAEFPHHLLRFRNDDVLGQMGLDANQVNDIDFVEAYGQFQSREPLLALC
YHGYQFGDYNPRLGDGRGFLYGQVRGTDGELYDLGTKGSGTTPYSRSADGRLTLKGGVREVLAAEALHHLGVRTSRCLSL
IETGESLWRGDEPSPTRSSVMVRFSRSHIRFGTFERLLALQRPDMIQQLLDHVIQYYYPHLWQQPDAYARFYAELVQRTA
ALVGQWMSVGFCHAVLNTDNMSITGESFDYGPYAFIQTLDPDFTAAYFDHFRRYSYGNQPGMCHWNLEMLQRPLVAVIPQ
ADLDAGLETFKSHYYSAYRQRMLGKLGFEPTEMSEAEDLLVQTLDFLQRSQVGYHAFFAELRLQFQETWRVDPGHIFSES
ELLSPPQWQDQLETWRQLYHRLLQQYPETELAAIKQRLQRNPRTVITRPQIEAIWEPIMIEDDWQPFYDLLQHLRQP

Sequences:

>Translated_477_residues
MSTPSTTNLLLNLAFEPALEALGEGFYDPVMAAEFPHHLLRFRNDDVLGQMGLDANQVNDIDFVEAYGQFQSREPLLALC
YHGYQFGDYNPRLGDGRGFLYGQVRGTDGELYDLGTKGSGTTPYSRSADGRLTLKGGVREVLAAEALHHLGVRTSRCLSL
IETGESLWRGDEPSPTRSSVMVRFSRSHIRFGTFERLLALQRPDMIQQLLDHVIQYYYPHLWQQPDAYARFYAELVQRTA
ALVGQWMSVGFCHAVLNTDNMSITGESFDYGPYAFIQTLDPDFTAAYFDHFRRYSYGNQPGMCHWNLEMLQRPLVAVIPQ
ADLDAGLETFKSHYYSAYRQRMLGKLGFEPTEMSEAEDLLVQTLDFLQRSQVGYHAFFAELRLQFQETWRVDPGHIFSES
ELLSPPQWQDQLETWRQLYHRLLQQYPETELAAIKQRLQRNPRTVITRPQIEAIWEPIMIEDDWQPFYDLLQHLRQP
>Mature_476_residues
STPSTTNLLLNLAFEPALEALGEGFYDPVMAAEFPHHLLRFRNDDVLGQMGLDANQVNDIDFVEAYGQFQSREPLLALCY
HGYQFGDYNPRLGDGRGFLYGQVRGTDGELYDLGTKGSGTTPYSRSADGRLTLKGGVREVLAAEALHHLGVRTSRCLSLI
ETGESLWRGDEPSPTRSSVMVRFSRSHIRFGTFERLLALQRPDMIQQLLDHVIQYYYPHLWQQPDAYARFYAELVQRTAA
LVGQWMSVGFCHAVLNTDNMSITGESFDYGPYAFIQTLDPDFTAAYFDHFRRYSYGNQPGMCHWNLEMLQRPLVAVIPQA
DLDAGLETFKSHYYSAYRQRMLGKLGFEPTEMSEAEDLLVQTLDFLQRSQVGYHAFFAELRLQFQETWRVDPGHIFSESE
LLSPPQWQDQLETWRQLYHRLLQQYPETELAAIKQRLQRNPRTVITRPQIEAIWEPIMIEDDWQPFYDLLQHLRQP

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=311, Percent_Identity=37.9421221864952, Blast_Score=209, Evalue=5e-54,
Organism=Escherichia coli, GI1787999, Length=313, Percent_Identity=38.9776357827476, Blast_Score=230, Evalue=1e-61,
Organism=Saccharomyces cerevisiae, GI6325034, Length=398, Percent_Identity=28.1407035175879, Blast_Score=148, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 55094; Mature: 54963

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPSTTNLLLNLAFEPALEALGEGFYDPVMAAEFPHHLLRFRNDDVLGQMGLDANQVND
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
IDFVEAYGQFQSREPLLALCYHGYQFGDYNPRLGDGRGFLYGQVRGTDGELYDLGTKGSG
HHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCC
TTPYSRSADGRLTLKGGVREVLAAEALHHLGVRTSRCLSLIETGESLWRGDEPSPTRSSV
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH
MVRFSRSHIRFGTFERLLALQRPDMIQQLLDHVIQYYYPHLWQQPDAYARFYAELVQRTA
HEEEHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ALVGQWMSVGFCHAVLNTDNMSITGESFDYGPYAFIQTLDPDFTAAYFDHFRRYSYGNQP
HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCC
GMCHWNLEMLQRPLVAVIPQADLDAGLETFKSHYYSAYRQRMLGKLGFEPTEMSEAEDLL
CEEEEEHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VQTLDFLQRSQVGYHAFFAELRLQFQETWRVDPGHIFSESELLSPPQWQDQLETWRQLYH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHH
RLLQQYPETELAAIKQRLQRNPRTVITRPQIEAIWEPIMIEDDWQPFYDLLQHLRQP
HHHHHCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCCCEECCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
STPSTTNLLLNLAFEPALEALGEGFYDPVMAAEFPHHLLRFRNDDVLGQMGLDANQVND
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
IDFVEAYGQFQSREPLLALCYHGYQFGDYNPRLGDGRGFLYGQVRGTDGELYDLGTKGSG
HHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCC
TTPYSRSADGRLTLKGGVREVLAAEALHHLGVRTSRCLSLIETGESLWRGDEPSPTRSSV
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH
MVRFSRSHIRFGTFERLLALQRPDMIQQLLDHVIQYYYPHLWQQPDAYARFYAELVQRTA
HEEEHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ALVGQWMSVGFCHAVLNTDNMSITGESFDYGPYAFIQTLDPDFTAAYFDHFRRYSYGNQP
HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCC
GMCHWNLEMLQRPLVAVIPQADLDAGLETFKSHYYSAYRQRMLGKLGFEPTEMSEAEDLL
CEEEEEHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VQTLDFLQRSQVGYHAFFAELRLQFQETWRVDPGHIFSESELLSPPQWQDQLETWRQLYH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHH
RLLQQYPETELAAIKQRLQRNPRTVITRPQIEAIWEPIMIEDDWQPFYDLLQHLRQP
HHHHHCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCCCEECCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA