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The map label for this gene is ccmK [C]

Identifier: 158338483

GI number: 158338483

Start: 5445989

End: 5446741

Strand: Direct

Name: ccmK [C]

Synonym: AM1_5385

Alternate gene names: 158338483

Gene position: 5445989-5446741 (Clockwise)

Preceding gene: 158338482

Following gene: 158338484

Centisome position: 83.74

GC content: 52.59

Gene sequence:

>753_bases
ATGATTCCTGCATCCAAATTAAAACGGAAACGCAGACCCGATAGCGCCTTGGGTTTGTTGTCTACTCCCAGTTTTCCAGC
GATTGTAGGAACTGCAGATGCAATGCTCAAGGCTGCGGAAGTAACCTTGGTGGGCTATGAAAAAATCGGTAGTGGGCTGT
GCACAGTGATTGTGCGTGGCAATATTGCGGACGTACGGCTGGCGGTAGAAGAAGGTAGTCGCTTAGCCGAAAAACTTGGG
CAAACCGTCTCTAAACTGGTGATTGCCCGCCCCATGCCCAATTTGGAAGCCGTCTTTCCCATCGGTAGTCATCTGGTCGA
AATCGCCCAGCAACAACGGGGCTATTCTCGCTTGAGCAACCAATCCATAGGGCTGCTGGAAACCCGAGGCTTCCCCGCCA
TGGTGGGGGCAGCTGATGCCATGCTCAAATCGGCCAATGTCCAACTCTCGGCCTATGAAACCATTGGCGCAGGACTATGT
ACCGCCATGGTCCGGGGGTCCGTTGCCAATGTTGCGGTCGCCATTGAAGCAGGCATGTTTGAGGCAGAACGGATCGGCGA
GCTTAATTCAGTCATGGTGATTCCTCGGGTGATGGATGATTTGGAAGCCATGCTTCCCGTGGCCAGCTGCTGGATCGAAA
AACCCCTACCCCTCCTCTTCTCTAATAAGGTAAAAGAGAAGGAAAAAGAATTGGTTCCTCTAGAGAACCTAGAACAACTC
TCCCGGTCGATTGAGCAAGAGCCCGAGACTTGA

Upstream 100 bases:

>100_bases
TACCCCTGATGCGAATGGGCTATTGCGGTTATTGTTAAACTGAACGAGACTAACTAGAGGTTTTGGGTTCAACGTCTCCG
CCTAGGTATTGATCATCGAT

Downstream 100 bases:

>100_bases
ACTTAGGTCTGAAGCATGAATATTCGTAGGTTTTGGGCAATATAAATCTGTAACTTCAGGCAAGATTATCCCTCAGGAGT
CGGGAGAGATTCTGACAGTG

Product: carbon dioxide concentrating mechanism protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MIPASKLKRKRRPDSALGLLSTPSFPAIVGTADAMLKAAEVTLVGYEKIGSGLCTVIVRGNIADVRLAVEEGSRLAEKLG
QTVSKLVIARPMPNLEAVFPIGSHLVEIAQQQRGYSRLSNQSIGLLETRGFPAMVGAADAMLKSANVQLSAYETIGAGLC
TAMVRGSVANVAVAIEAGMFEAERIGELNSVMVIPRVMDDLEAMLPVASCWIEKPLPLLFSNKVKEKEKELVPLENLEQL
SRSIEQEPET

Sequences:

>Translated_250_residues
MIPASKLKRKRRPDSALGLLSTPSFPAIVGTADAMLKAAEVTLVGYEKIGSGLCTVIVRGNIADVRLAVEEGSRLAEKLG
QTVSKLVIARPMPNLEAVFPIGSHLVEIAQQQRGYSRLSNQSIGLLETRGFPAMVGAADAMLKSANVQLSAYETIGAGLC
TAMVRGSVANVAVAIEAGMFEAERIGELNSVMVIPRVMDDLEAMLPVASCWIEKPLPLLFSNKVKEKEKELVPLENLEQL
SRSIEQEPET
>Mature_250_residues
MIPASKLKRKRRPDSALGLLSTPSFPAIVGTADAMLKAAEVTLVGYEKIGSGLCTVIVRGNIADVRLAVEEGSRLAEKLG
QTVSKLVIARPMPNLEAVFPIGSHLVEIAQQQRGYSRLSNQSIGLLETRGFPAMVGAADAMLKSANVQLSAYETIGAGLC
TAMVRGSVANVAVAIEAGMFEAERIGELNSVMVIPRVMDDLEAMLPVASCWIEKPLPLLFSNKVKEKEKELVPLENLEQL
SRSIEQEPET

Specific function: May Be Involved In The Formation Of A Specific Microcompartiment In The Cell In Which The Metabolism Of Potentially Toxic By-Products Takes Place. [C]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=88, Percent_Identity=52.2727272727273, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 26840; Mature: 26840

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS01139 BACT_MICROCOMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPASKLKRKRRPDSALGLLSTPSFPAIVGTADAMLKAAEVTLVGYEKIGSGLCTVIVRG
CCCHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHEEEEEHHHHCCCEEEEEEEC
NIADVRLAVEEGSRLAEKLGQTVSKLVIARPMPNLEAVFPIGSHLVEIAQQQRGYSRLSN
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHCC
QSIGLLETRGFPAMVGAADAMLKSANVQLSAYETIGAGLCTAMVRGSVANVAVAIEAGMF
CCCCEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCHHHEEEEEECCCC
EAERIGELNSVMVIPRVMDDLEAMLPVASCWIEKPLPLLFSNKVKEKEKELVPLENLEQL
CHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHH
SRSIEQEPET
HHHHHCCCCC
>Mature Secondary Structure
MIPASKLKRKRRPDSALGLLSTPSFPAIVGTADAMLKAAEVTLVGYEKIGSGLCTVIVRG
CCCHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHEEEEEHHHHCCCEEEEEEEC
NIADVRLAVEEGSRLAEKLGQTVSKLVIARPMPNLEAVFPIGSHLVEIAQQQRGYSRLSN
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHCC
QSIGLLETRGFPAMVGAADAMLKSANVQLSAYETIGAGLCTAMVRGSVANVAVAIEAGMF
CCCCEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCHHHEEEEEECCCC
EAERIGELNSVMVIPRVMDDLEAMLPVASCWIEKPLPLLFSNKVKEKEKELVPLENLEQL
CHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHH
SRSIEQEPET
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]