Click here to switch to the map view.

The map label for this gene is hcaC [C]

Identifier: 158338420

GI number: 158338420

Start: 5384700

End: 5386418

Strand: Reverse

Name: hcaC [C]

Synonym: AM1_5320

Alternate gene names: 158338420

Gene position: 5386418-5384700 (Counterclockwise)

Preceding gene: 158338422

Following gene: 158338419

Centisome position: 82.82

GC content: 54.57

Gene sequence:

>1719_bases
ATGGAGACTTGCGATCGCACATTCAGTTACGTGGCTGATCTGGCCGATCTCTCGGAATCGGGCTGCCATGTCGTCTATGT
GGACGGTAAAGCTATTGCCCTCTTTCGGCAAACGGATCAAATTTTTGCCATCGATAACCGCTGTCCCCATATGGGCTTCC
CCCTCCATAAAGGCACTGCCCAGGATGGCATTCTGATTTGTCACTGGCACCATGCCCGCTTTGACTTAGCCAGTGGAGGC
ACCTTTGATCTGTGGGCAGATGATGTCCAGTCGTTTCCCGTGGAGATTCGGGAGGGCCAGATTTGGGTGGATCTGTCCAC
ACCTCAAGATCGAAAAGCCTATTATCGACAGCGCCTTACGGATGGCTTGGAGCAGAGCATCTCCTTAGTGATTGCTAAAT
CGGTATTGGCATTACTGGCCTTGGGAGTCGATCCGTCGGAACTGATTGAAATTGGGTTAGCCTTTGGCAGCCGCTATCGC
CGGGCCGGATGGGGCGCAGGTTTAACCATCTTGACCTGTATGGCCAATCTCTTACCCCACCTCGATCAAGACGATCGACC
TTTAGCCCTCTATCACGGCTTAAGCGCCGTCGCCCGTGATTGCGCGGGTTCGCCGCCCCGCTTTGATATTCAGCCTCTCC
CGCGATCCACCGCTGATTTAGACACCCTTAAGGGCTGGTTTCGAGAATTTGTCGAGGTTCGAGATCAGCAGGGAGCCGAA
CGCTGTCTCGTTTCCGCTATCCGTAGTGATGCGCCTCCAGCGCAGGTTGCCGAGATGCTGTTTGCTGCTGCCACCGATCA
CCGGTTTCTGGATGGCGGTCATACCCTGGACTTTACCAATAAAGCCCTTGAGGCCTTGGATGTGGTGGGTTGGCCTCAGG
CTGAGACTATTTTGCCCAGCTTGGTGAGGGGATATACCGATGCTGAACGGATGGAAGAATCTAGTGCTTGGCGGAGTCCC
GTTGATTTGGTGGCTCTGTTGGAGCAAGCTTTTGCGACGTTGCCACACATCTATCAAGCATCCCAGAAGACGCCAGTGGA
TCAAGGGGCTTTAATCCCGATCCTCTTGGGCGATGATCCAGCCCTGATTATTGACGAGTTGCTCCGAGCGATTCAGAACG
GATGTAGCGACGTGGAATTGGCCCAGGTGGTCACCTATGCCGCTGCTAGGCGGGTAGCACAATTCAGCATCAATAATGAT
TTTCGGGATTGGGATATTGCCCATCACACCTTTACCTTTGCCAATGCCGTGTGTCAGGGATTGCGGCGAGTCCCTTCTGT
TACCCTCTTGCGAGGCGTGTTTGATGCTGCGATGCGGATTTATCTCAATCGGTTTTTGAATATTCCTCCGGTGCCTTTGC
CTCGGCCTGAATCCCAGGCCCCCTCTTTGGCTGGACTTCCGGACTTGCTCGATCGCCAACAGCAGGTCAAGGCAGTGGGT
GAGGTGGTGGCTCAGTTTCAATTTAACGGAGGAGAAGCACCCCATCTACTGGCTGAGCTGGGGAAACTCCTGCTCCGAGA
AGATCGCAATTTTCACACCATCCAGGAAATAGAGGCCGCGGTTCGCCAGTATGAACAATGGTCAGACAGCCCTACCCGTC
CCTATTGGTTAGTAGCCGCCTCCCGTTACTTAGCGGCCCATGCCCCCACGGCCAGAGCCCAAGGCCAAACTTATCGGATT
GCCCACCGCCTCCAGCAAGGGGATCAGGTCTTTGAGTAG

Upstream 100 bases:

>100_bases
CACACCCTAGCACTAAGTGAGTTATCCTAAATCCCATTAACGTTAGAGCATTATCCTGAAGATACCCCCAGCAATAAGGT
TCCCCAGAGGTGAGGTAGGC

Downstream 100 bases:

>100_bases
GAAATAGATATGAGATTGATTAGATGGTCTATCAGTATGTCTTTGGTCATGGGCTTGGGATTTTGTACTGCTCCGTCTCA
ACTGTCGCCACAGCCGCAGC

Product: ferredoxin subunits of nitrite reductase and ring-hydroxylating

Products: nitrite; NADH; NADPH; H+

Alternate protein names: Rieske Iron-Sulfur Domain Protein; Ferredoxin Domain-Containing Protein; Rieske Iron-Sulfur Domain-Containing Protein; Ferredoxin Reductase Component; Rieske Iron-Sulfur Domain

Number of amino acids: Translated: 572; Mature: 572

Protein sequence:

>572_residues
METCDRTFSYVADLADLSESGCHVVYVDGKAIALFRQTDQIFAIDNRCPHMGFPLHKGTAQDGILICHWHHARFDLASGG
TFDLWADDVQSFPVEIREGQIWVDLSTPQDRKAYYRQRLTDGLEQSISLVIAKSVLALLALGVDPSELIEIGLAFGSRYR
RAGWGAGLTILTCMANLLPHLDQDDRPLALYHGLSAVARDCAGSPPRFDIQPLPRSTADLDTLKGWFREFVEVRDQQGAE
RCLVSAIRSDAPPAQVAEMLFAAATDHRFLDGGHTLDFTNKALEALDVVGWPQAETILPSLVRGYTDAERMEESSAWRSP
VDLVALLEQAFATLPHIYQASQKTPVDQGALIPILLGDDPALIIDELLRAIQNGCSDVELAQVVTYAAARRVAQFSINND
FRDWDIAHHTFTFANAVCQGLRRVPSVTLLRGVFDAAMRIYLNRFLNIPPVPLPRPESQAPSLAGLPDLLDRQQQVKAVG
EVVAQFQFNGGEAPHLLAELGKLLLREDRNFHTIQEIEAAVRQYEQWSDSPTRPYWLVAASRYLAAHAPTARAQGQTYRI
AHRLQQGDQVFE

Sequences:

>Translated_572_residues
METCDRTFSYVADLADLSESGCHVVYVDGKAIALFRQTDQIFAIDNRCPHMGFPLHKGTAQDGILICHWHHARFDLASGG
TFDLWADDVQSFPVEIREGQIWVDLSTPQDRKAYYRQRLTDGLEQSISLVIAKSVLALLALGVDPSELIEIGLAFGSRYR
RAGWGAGLTILTCMANLLPHLDQDDRPLALYHGLSAVARDCAGSPPRFDIQPLPRSTADLDTLKGWFREFVEVRDQQGAE
RCLVSAIRSDAPPAQVAEMLFAAATDHRFLDGGHTLDFTNKALEALDVVGWPQAETILPSLVRGYTDAERMEESSAWRSP
VDLVALLEQAFATLPHIYQASQKTPVDQGALIPILLGDDPALIIDELLRAIQNGCSDVELAQVVTYAAARRVAQFSINND
FRDWDIAHHTFTFANAVCQGLRRVPSVTLLRGVFDAAMRIYLNRFLNIPPVPLPRPESQAPSLAGLPDLLDRQQQVKAVG
EVVAQFQFNGGEAPHLLAELGKLLLREDRNFHTIQEIEAAVRQYEQWSDSPTRPYWLVAASRYLAAHAPTARAQGQTYRI
AHRLQQGDQVFE
>Mature_572_residues
METCDRTFSYVADLADLSESGCHVVYVDGKAIALFRQTDQIFAIDNRCPHMGFPLHKGTAQDGILICHWHHARFDLASGG
TFDLWADDVQSFPVEIREGQIWVDLSTPQDRKAYYRQRLTDGLEQSISLVIAKSVLALLALGVDPSELIEIGLAFGSRYR
RAGWGAGLTILTCMANLLPHLDQDDRPLALYHGLSAVARDCAGSPPRFDIQPLPRSTADLDTLKGWFREFVEVRDQQGAE
RCLVSAIRSDAPPAQVAEMLFAAATDHRFLDGGHTLDFTNKALEALDVVGWPQAETILPSLVRGYTDAERMEESSAWRSP
VDLVALLEQAFATLPHIYQASQKTPVDQGALIPILLGDDPALIIDELLRAIQNGCSDVELAQVVTYAAARRVAQFSINND
FRDWDIAHHTFTFANAVCQGLRRVPSVTLLRGVFDAAMRIYLNRFLNIPPVPLPRPESQAPSLAGLPDLLDRQQQVKAVG
EVVAQFQFNGGEAPHLLAELGKLLLREDRNFHTIQEIEAAVRQYEQWSDSPTRPYWLVAASRYLAAHAPTARAQGQTYRI
AHRLQQGDQVFE

Specific function: Part Of Multicomponent 3-Phenylpropionate Dioxygenase. That Converts 3-Phenylpropionic Acid (Pp) Into Cis-3-(3- Carboxyethyl)-3,5-Cyclohexadiene-1,2-Diol (Pp-Dihydrodiol). This Protein Seems To Be A 2fe-2s Ferredoxin. [C]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.7.1.4

Molecular weight: Translated: 63549; Mature: 63549

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METCDRTFSYVADLADLSESGCHVVYVDGKAIALFRQTDQIFAIDNRCPHMGFPLHKGTA
CCCHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCC
QDGILICHWHHARFDLASGGTFDLWADDVQSFPVEIREGQIWVDLSTPQDRKAYYRQRLT
CCCEEEEEEECCEEECCCCCCCCHHHHHHHCCCEEEECCEEEEEECCCCHHHHHHHHHHH
DGLEQSISLVIAKSVLALLALGVDPSELIEIGLAFGSRYRRAGWGAGLTILTCMANLLPH
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
LDQDDRPLALYHGLSAVARDCAGSPPRFDIQPLPRSTADLDTLKGWFREFVEVRDQQGAE
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH
RCLVSAIRSDAPPAQVAEMLFAAATDHRFLDGGHTLDFTNKALEALDVVGWPQAETILPS
HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHCCCCCHHHHHHH
LVRGYTDAERMEESSAWRSPVDLVALLEQAFATLPHIYQASQKTPVDQGALIPILLGDDP
HHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
ALIIDELLRAIQNGCSDVELAQVVTYAAARRVAQFSINNDFRDWDIAHHTFTFANAVCQG
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LRRVPSVTLLRGVFDAAMRIYLNRFLNIPPVPLPRPESQAPSLAGLPDLLDRQQQVKAVG
HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
EVVAQFQFNGGEAPHLLAELGKLLLREDRNFHTIQEIEAAVRQYEQWSDSPTRPYWLVAA
HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEH
SRYLAAHAPTARAQGQTYRIAHRLQQGDQVFE
HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
METCDRTFSYVADLADLSESGCHVVYVDGKAIALFRQTDQIFAIDNRCPHMGFPLHKGTA
CCCHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCC
QDGILICHWHHARFDLASGGTFDLWADDVQSFPVEIREGQIWVDLSTPQDRKAYYRQRLT
CCCEEEEEEECCEEECCCCCCCCHHHHHHHCCCEEEECCEEEEEECCCCHHHHHHHHHHH
DGLEQSISLVIAKSVLALLALGVDPSELIEIGLAFGSRYRRAGWGAGLTILTCMANLLPH
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
LDQDDRPLALYHGLSAVARDCAGSPPRFDIQPLPRSTADLDTLKGWFREFVEVRDQQGAE
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH
RCLVSAIRSDAPPAQVAEMLFAAATDHRFLDGGHTLDFTNKALEALDVVGWPQAETILPS
HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHCCCCCHHHHHHH
LVRGYTDAERMEESSAWRSPVDLVALLEQAFATLPHIYQASQKTPVDQGALIPILLGDDP
HHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
ALIIDELLRAIQNGCSDVELAQVVTYAAARRVAQFSINNDFRDWDIAHHTFTFANAVCQG
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LRRVPSVTLLRGVFDAAMRIYLNRFLNIPPVPLPRPESQAPSLAGLPDLLDRQQQVKAVG
HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
EVVAQFQFNGGEAPHLLAELGKLLLREDRNFHTIQEIEAAVRQYEQWSDSPTRPYWLVAA
HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEH
SRYLAAHAPTARAQGQTYRIAHRLQQGDQVFE
HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ammonium hydroxide; NAD+; NADP+; H2O

Specific reaction: ammonium hydroxide + 3 NAD(P)+ + H2O = nitrite + 3 NAD(P)H + 3 H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA