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The map label for this gene is 158338301

Identifier: 158338301

GI number: 158338301

Start: 5260342

End: 5260773

Strand: Reverse

Name: 158338301

Synonym: AM1_5197

Alternate gene names: NA

Gene position: 5260773-5260342 (Counterclockwise)

Preceding gene: 158338302

Following gene: 158338300

Centisome position: 80.89

GC content: 47.22

Gene sequence:

>432_bases
ATGCTATATTGTCTCCCCTTTCCATTCCTCCAACCAGCGTCCCTGTCTCTTGCAGAAGTGCGGTCAGTTTCGCCAGCAGC
ACTGGCCTATATCGGAGATGCTGTCTTTGAGCTATATATAAGACGTTACTGCCTTCTGCCTCCATCTCGGTTGCGAGACT
ATCACCAGAAGGTCGTGTCTTATGTTCGGGCTGAGACACAGGCTGAAATGGTTCGAGACCTTTATCCTCTGCTGTCAGAT
GATGAGCAAGCAATCCTCAAGCAAGGTAGAAATGCTGCGGCAGGAGGCCCTAAAAGAATTAATCTAGAGACTTATCAATA
TGCAACGGGTTTTGAAGCCTTGATTGGTTATCTCTATTTGACGGATACCACTCGATTGGAAGAGCTGCTAGCCCAAATTA
AGTTTGATCGCTCATCGCCTGATCCTGCTTAA

Upstream 100 bases:

>100_bases
TATCGTTTTCAACCTATCGTAATAGTTAATCCAGTTAAAAATCATATCTAAAATAGATTCCTGATGTCCCTCCTTGTTGC
TTAGTACCTGAGCAACAGCG

Downstream 100 bases:

>100_bases
AATAGCTTCGGTTTAATTTTGCCCTGGACGTAGTATTTGTCCCGTAGCACGAGAGTTTCATCCCTATGACCAAAGCGCGG
CCATCCCATAATAATCACGG

Product: ribonuclease III domain-containing protein

Products: NA

Alternate protein names: URF4 [H]

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MLYCLPFPFLQPASLSLAEVRSVSPAALAYIGDAVFELYIRRYCLLPPSRLRDYHQKVVSYVRAETQAEMVRDLYPLLSD
DEQAILKQGRNAAAGGPKRINLETYQYATGFEALIGYLYLTDTTRLEELLAQIKFDRSSPDPA

Sequences:

>Translated_143_residues
MLYCLPFPFLQPASLSLAEVRSVSPAALAYIGDAVFELYIRRYCLLPPSRLRDYHQKVVSYVRAETQAEMVRDLYPLLSD
DEQAILKQGRNAAAGGPKRINLETYQYATGFEALIGYLYLTDTTRLEELLAQIKFDRSSPDPA
>Mature_143_residues
MLYCLPFPFLQPASLSLAEVRSVSPAALAYIGDAVFELYIRRYCLLPPSRLRDYHQKVVSYVRAETQAEMVRDLYPLLSD
DEQAILKQGRNAAAGGPKRINLETYQYATGFEALIGYLYLTDTTRLEELLAQIKFDRSSPDPA

Specific function: Unknown

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16184; Mature: 16184

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYCLPFPFLQPASLSLAEVRSVSPAALAYIGDAVFELYIRRYCLLPPSRLRDYHQKVVS
CEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
YVRAETQAEMVRDLYPLLSDDEQAILKQGRNAAAGGPKRINLETYQYATGFEALIGYLYL
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHH
TDTTRLEELLAQIKFDRSSPDPA
CCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLYCLPFPFLQPASLSLAEVRSVSPAALAYIGDAVFELYIRRYCLLPPSRLRDYHQKVVS
CEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
YVRAETQAEMVRDLYPLLSDDEQAILKQGRNAAAGGPKRINLETYQYATGFEALIGYLYL
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHH
TDTTRLEELLAQIKFDRSSPDPA
CCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8363578 [H]