| Definition | Acaryochloris marina MBIC11017 chromosome, complete genome. |
|---|---|
| Accession | NC_009925 |
| Length | 6,503,724 |
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The map label for this gene is amyB [H]
Identifier: 158338201
GI number: 158338201
Start: 5148528
End: 5150342
Strand: Direct
Name: amyB [H]
Synonym: AM1_5095
Alternate gene names: 158338201
Gene position: 5148528-5150342 (Clockwise)
Preceding gene: 158338200
Following gene: 158338202
Centisome position: 79.16
GC content: 48.54
Gene sequence:
>1815_bases ATGTTTAGTGCTCCTCAGCATGCAGTGGCTGTCGCTTGTCTAACTTCAGTGATCGCCGTTGCCCCTGTTCCTATGCGCTC TGCCTTTGCTCAGTCCCAATTTACGGACGTCAGTAGCAATTGGGCTCAACCTTTCATTGATACCCTTGCTCAAAAAAATA TAATTAGTGGTTTTCCCGATGGCTCCTTCCGACCTGACCAACCCGTGACTCGGGCTCAGTTTGCTGCCATTGTCCGCCAA GCTTTTAAGTCTCCAGCTACTCGCCTTTCACGCCCTTTTAAGGATGTAAGCTATGCTTACTGGGCTTCTCCAGCCATTGA CTATGCTTACACCACAGGGTTCTTGTCGGGCTATACCAACGGATCCTTCCAGCCAGATCAAGAGATCCCTAAGGTACAAG CGTTGGTGGCCATTGCCAGTGGATTAAAGATTCAACCTGTGGGGTCTGTGGATAGCACCTTGCTCCGCTTCTACGATGCA GCTCAAATTCCCAACTATGCTAAACCGGGGGTTGCTGCGGCAACGCAACGTAATATTCCTGTGAATTATCCAAATGCGGC TACCTTAAATCCGAATCAACAAGCCACTCGGGCCGATATTGCTGCCTATATTTATCAAGCATTAGTTAGTCAGGGACGCT TGGCTCCCATTGGCAGTAATTTCCCTGCCTCACAATATATTGTTCAGGGCGGCTCTCTCCCGGCGACACCCTCAGAAGCT GGTACTGGAACTTTAGCGGTGGGGACTGAGCTTCCCGTTCAGTTAGAAGGAGCAGAACCCGGTGCCAATCTCGTGATGAC CGTGGGCGAAAATGTTGAAACCACGTTTGTCGTTGCGGAAGATGTGGTGAATACCCGTCAACAGGTTGTTATCCCTGAAG GCAGTAAGATTGTCGGTCGTTTCCAGCCCTTTGAAGTAAACAAGACCTTAGGGACTCAGTTCACGGCCAGTAAATTAATG ATTGGCAATACGCCCTATACCGTTAATGCGTCTTCTGTTCCCATTGCTGCTCGCAAAAAGAGTTCTCTAAGTATTGCTGA TTTAACCGGAAGTATCACCACTCTGGCCGCTTCAGCCGCTTTGGATTCTGCTATTAGTGGGAATGTGCGATTTGGTTCCT TAGTGCCTGGGATTATCCAGACTGGGCAAACCATAGGCAAACAGGTGATCGGCAAATCCGATACCAGTGATGAGGTCATT CTTGTTGAACCCGATCTGATGGGATTAAAGCTCAATGCTGATTTTGAGTTTTTACCGGGTTCAACCACAGCCTTTGTGGA TCCTAATTCTGCCAATCTATATCAGGTGGACTCTGGGACAAAGGTCGATCTGGCAGCCCAAACAGACAATGCCAGATACG TCATGGTTCCCGGTGAAACGGTTCCCGTGGAGCTAAAAACGGGACGTTCTATCTATAACCGTCAAAATGAAGTTCTTGTG CCAGAGGGGAGTCTGATTCGTGGCCAGATCGTACCGATGACGGTGAATGGCAAAGAAGGAGCCCAATTTGTGGCTAATGA AATTGTGATTGGCACCCAAACATATCCCATTACTGCTGCTTCAGCAGGGATTTCTCCCTCTTCCTTGCAGTCTTTAAGCC CAGCTGATTTTCAAGGGAATGTGATTGCTTCTCCTGAAGCCAGTCAATCTCTTCGCGGGGTTAGCTCAACTGGCGAGCAA CAGTCAGGTGGCTTATTAGGCCTAGGAAGTCTGATTGGTGGAAGCGGTTCCGGTAAAAAGGTGATCTTATTTAACCCCAC CTCTGTACAGATGGAGTTTCGTGCTCCCTTGAGCTTAAATAACTTCAATAACTAG
Upstream 100 bases:
>100_bases CCCTGCATCACCTTTCGTCAAAACGGGAATGGGATTTTATTGACATGGGGAATACACAGTTCAACCTGTTCAATCCAATC CTAAAAAAGGTGTTAGAAAC
Downstream 100 bases:
>100_bases AGATAATGGGCTGCCCAAGTTGCCTCGATCAGAGGCAATCCCGGTAGGGGCTTGGGCGGTTACCTTGTCAAGATTTTCAT AATTGAAGATTGGCTTTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: Alpha-amylase/pullulanase; Pullulanase type II; Alpha-amylase; 1,4-alpha-D-glucan glucanohydrolase; Pullulanase; 1,4-alpha-D-glucan glucanohydrolase; Alpha-dextrin endo-1,6-alpha-glucosidase [H]
Number of amino acids: Translated: 604; Mature: 604
Protein sequence:
>604_residues MFSAPQHAVAVACLTSVIAVAPVPMRSAFAQSQFTDVSSNWAQPFIDTLAQKNIISGFPDGSFRPDQPVTRAQFAAIVRQ AFKSPATRLSRPFKDVSYAYWASPAIDYAYTTGFLSGYTNGSFQPDQEIPKVQALVAIASGLKIQPVGSVDSTLLRFYDA AQIPNYAKPGVAAATQRNIPVNYPNAATLNPNQQATRADIAAYIYQALVSQGRLAPIGSNFPASQYIVQGGSLPATPSEA GTGTLAVGTELPVQLEGAEPGANLVMTVGENVETTFVVAEDVVNTRQQVVIPEGSKIVGRFQPFEVNKTLGTQFTASKLM IGNTPYTVNASSVPIAARKKSSLSIADLTGSITTLAASAALDSAISGNVRFGSLVPGIIQTGQTIGKQVIGKSDTSDEVI LVEPDLMGLKLNADFEFLPGSTTAFVDPNSANLYQVDSGTKVDLAAQTDNARYVMVPGETVPVELKTGRSIYNRQNEVLV PEGSLIRGQIVPMTVNGKEGAQFVANEIVIGTQTYPITAASAGISPSSLQSLSPADFQGNVIASPEASQSLRGVSSTGEQ QSGGLLGLGSLIGGSGSGKKVILFNPTSVQMEFRAPLSLNNFNN
Sequences:
>Translated_604_residues MFSAPQHAVAVACLTSVIAVAPVPMRSAFAQSQFTDVSSNWAQPFIDTLAQKNIISGFPDGSFRPDQPVTRAQFAAIVRQ AFKSPATRLSRPFKDVSYAYWASPAIDYAYTTGFLSGYTNGSFQPDQEIPKVQALVAIASGLKIQPVGSVDSTLLRFYDA AQIPNYAKPGVAAATQRNIPVNYPNAATLNPNQQATRADIAAYIYQALVSQGRLAPIGSNFPASQYIVQGGSLPATPSEA GTGTLAVGTELPVQLEGAEPGANLVMTVGENVETTFVVAEDVVNTRQQVVIPEGSKIVGRFQPFEVNKTLGTQFTASKLM IGNTPYTVNASSVPIAARKKSSLSIADLTGSITTLAASAALDSAISGNVRFGSLVPGIIQTGQTIGKQVIGKSDTSDEVI LVEPDLMGLKLNADFEFLPGSTTAFVDPNSANLYQVDSGTKVDLAAQTDNARYVMVPGETVPVELKTGRSIYNRQNEVLV PEGSLIRGQIVPMTVNGKEGAQFVANEIVIGTQTYPITAASAGISPSSLQSLSPADFQGNVIASPEASQSLRGVSSTGEQ QSGGLLGLGSLIGGSGSGKKVILFNPTSVQMEFRAPLSLNNFNN >Mature_604_residues MFSAPQHAVAVACLTSVIAVAPVPMRSAFAQSQFTDVSSNWAQPFIDTLAQKNIISGFPDGSFRPDQPVTRAQFAAIVRQ AFKSPATRLSRPFKDVSYAYWASPAIDYAYTTGFLSGYTNGSFQPDQEIPKVQALVAIASGLKIQPVGSVDSTLLRFYDA AQIPNYAKPGVAAATQRNIPVNYPNAATLNPNQQATRADIAAYIYQALVSQGRLAPIGSNFPASQYIVQGGSLPATPSEA GTGTLAVGTELPVQLEGAEPGANLVMTVGENVETTFVVAEDVVNTRQQVVIPEGSKIVGRFQPFEVNKTLGTQFTASKLM IGNTPYTVNASSVPIAARKKSSLSIADLTGSITTLAASAALDSAISGNVRFGSLVPGIIQTGQTIGKQVIGKSDTSDEVI LVEPDLMGLKLNADFEFLPGSTTAFVDPNSANLYQVDSGTKVDLAAQTDNARYVMVPGETVPVELKTGRSIYNRQNEVLV PEGSLIRGQIVPMTVNGKEGAQFVANEIVIGTQTYPITAASAGISPSSLQSLSPADFQGNVIASPEASQSLRGVSSTGEQ QSGGLLGLGSLIGGSGSGKKVILFNPTSVQMEFRAPLSLNNFNN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall. Note=It C-terminus may serve as an S-layer anchor [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 3 SLH (S-layer homology) domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006048 - InterPro: IPR013784 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR004185 - InterPro: IPR006589 - InterPro: IPR002044 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR014756 - InterPro: IPR001119 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF02903 Alpha-amylase_N; PF00395 SLH [H]
EC number: =3.2.1.1; =3.2.1.41 [H]
Molecular weight: Translated: 63338; Mature: 63338
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS01072 SLH_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSAPQHAVAVACLTSVIAVAPVPMRSAFAQSQFTDVSSNWAQPFIDTLAQKNIISGFPD CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC GSFRPDQPVTRAQFAAIVRQAFKSPATRLSRPFKDVSYAYWASPAIDYAYTTGFLSGYTN CCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCHHHCCEEEECCCCCCHHHHHHHHHCCCC GSFQPDQEIPKVQALVAIASGLKIQPVGSVDSTLLRFYDAAQIPNYAKPGVAAATQRNIP CCCCCCHHCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC VNYPNAATLNPNQQATRADIAAYIYQALVSQGRLAPIGSNFPASQYIVQGGSLPATPSEA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCC GTGTLAVGTELPVQLEGAEPGANLVMTVGENVETTFVVAEDVVNTRQQVVIPEGSKIVGR CCCEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEEEHHHHCCCCEEEECCCCEEEEE FQPFEVNKTLGTQFTASKLMIGNTPYTVNASSVPIAARKKSSLSIADLTGSITTLAASAA CCCEEECHHHCCEEEECEEEECCCCEEECCCCCCEEECCCCCCEEECCCCCHHHHHHHHH LDSAISGNVRFGSLVPGIIQTGQTIGKQVIGKSDTSDEVILVEPDLMGLKLNADFEFLPG HHHHHCCCEEECCCCHHHHHCCHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCEEECCC STTAFVDPNSANLYQVDSGTKVDLAAQTDNARYVMVPGETVPVELKTGRSIYNRQNEVLV CEEEEECCCCCCEEEECCCCEEEEEEECCCCEEEEECCCEEEEEEECCCHHHCCCCCEEC PEGSLIRGQIVPMTVNGKEGAQFVANEIVIGTQTYPITAASAGISPSSLQSLSPADFQGN CCCCEEECEEEEEEECCCCCHHEEEEEEEECCCCCCEEECCCCCCHHHHHCCCCCCCCCC VIASPEASQSLRGVSSTGEQQSGGLLGLGSLIGGSGSGKKVILFNPTSVQMEFRAPLSLN EEECCCHHHHHCCCCCCCCCCCCCEEEEHHHHCCCCCCCEEEEECCCEEEEEEECCCCCC NFNN CCCC >Mature Secondary Structure MFSAPQHAVAVACLTSVIAVAPVPMRSAFAQSQFTDVSSNWAQPFIDTLAQKNIISGFPD CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC GSFRPDQPVTRAQFAAIVRQAFKSPATRLSRPFKDVSYAYWASPAIDYAYTTGFLSGYTN CCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCHHHCCEEEECCCCCCHHHHHHHHHCCCC GSFQPDQEIPKVQALVAIASGLKIQPVGSVDSTLLRFYDAAQIPNYAKPGVAAATQRNIP CCCCCCHHCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC VNYPNAATLNPNQQATRADIAAYIYQALVSQGRLAPIGSNFPASQYIVQGGSLPATPSEA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCC GTGTLAVGTELPVQLEGAEPGANLVMTVGENVETTFVVAEDVVNTRQQVVIPEGSKIVGR CCCEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEEEHHHHCCCCEEEECCCCEEEEE FQPFEVNKTLGTQFTASKLMIGNTPYTVNASSVPIAARKKSSLSIADLTGSITTLAASAA CCCEEECHHHCCEEEECEEEECCCCEEECCCCCCEEECCCCCCEEECCCCCHHHHHHHHH LDSAISGNVRFGSLVPGIIQTGQTIGKQVIGKSDTSDEVILVEPDLMGLKLNADFEFLPG HHHHHCCCEEECCCCHHHHHCCHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCEEECCC STTAFVDPNSANLYQVDSGTKVDLAAQTDNARYVMVPGETVPVELKTGRSIYNRQNEVLV CEEEEECCCCCCEEEECCCCEEEEEEECCCCEEEEECCCEEEEEEECCCHHHCCCCCEEC PEGSLIRGQIVPMTVNGKEGAQFVANEIVIGTQTYPITAASAGISPSSLQSLSPADFQGN CCCCEEECEEEEEEECCCCCHHEEEEEEEECCCCCCEEECCCCCCHHHHHCCCCCCCCCC VIASPEASQSLRGVSSTGEQQSGGLLGLGSLIGGSGSGKKVILFNPTSVQMEFRAPLSLN EEECCCHHHHHCCCCCCCCCCCCCEEEEHHHHCCCCCCCEEEEECCCEEEEEEECCCCCC NFNN CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8195085 [H]