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The map label for this gene is yjcF [C]

Identifier: 158338170

GI number: 158338170

Start: 5106980

End: 5108317

Strand: Reverse

Name: yjcF [C]

Synonym: AM1_5062

Alternate gene names: 158338170

Gene position: 5108317-5106980 (Counterclockwise)

Preceding gene: 158338171

Following gene: 158338162

Centisome position: 78.54

GC content: 46.19

Gene sequence:

>1338_bases
TTGTTTCGGGAAGATTTTGAGAGTGTGATGGCTGATCAGGAACAGGTTGATTTACTAAAGCAAGGTGCCGATGCTTGGAA
TTCTTGGAGAGCAAAGAATACAGCCATAAAGATAGACTTTAGCTCTACCAACCTCAACAATGTTAACCTCAGCGATTTCA
ACCTGAACCGTGCTAACCTCAGCAATTCGGATCTCAGTGGTACTGACCTCATCGGTGCTGACCTCAGTGATTCCAATCTC
AGCTGTGTCAATCTCAGCCATGCCAATCTCATCGGTGCCAATCTCAGCCGTGCTAACCTCATCGGTGCCAATCTCAGCCA
TACTAACCTCACCGATACTGATCTGAGCGATTCTAACCTTAGTGGTTCAGACCTGATGGGTGCTAACCTCAGTGATTCAG
ACCTCATCGGTGCCTACCTCAGTGGTGCCGATCTTAGAGACTCAGACCTCAGTGGTGCCAATCTCAGGGAGGTCAACCTT
AGCGATTCAGACCTTAGTGATTCAGACCTTAGCGATTCAGACCTCAGTCGTGCCAATCTCAGTGGTTCTGGCCTCATTGG
TGCTGATCTCAGGGATTCAGACCTTATTGGTGCCTACCTCAGTGGTACTGACCTCATCGGTGCTGACCTTAGTGATTCAG
ACTTAGCTCGTTCCAACTTTAGTGATGCCAATCTTAGAGGTGTAGACCTGAGTTGTTCCAACCTTAGCAATGCGAATCTT
AGAGATGCTGACCTCAGCAATGCCAATCTCAGCAATACTAACTTTAGTGGCGCCAATCTCAGCGGTGCCAATCTCAGCAA
TGCCAATCTCCTTAATAGCAAGCTGCGCAATGCATTGTTGACAAGAGCTTGTATTCAAGATTGGAAAATTAATGCTGAGA
CTGACTTTGCTGGTGTGGTTTGTGAATATATCTATCTCAAGGCTTCCCAACAAGAACGTCGTCCACTCACAGAAAATTTT
GGTTTGGATGAATTCGCCGCCTTAGTCCAGACCTCTTTGGAATCCATCGATCTAATCTTTGTGGATGGTATTGACTGGCG
AGCCTTTCTTCAGTCTTTTCAGAAGCTCTGCTCCCAGTTTGGTGACCAAGCGATTGGCATCCAGGCTATTGAAAGGAAGG
GCGAGGAACTTATTATCCGTTTAGAAGGGTCGCTTGCGGTGGATAAAAGTGTTATTGAAACGACAGCCAAGGAAAATTAC
AGTCGTGAGTTACAACGAATGGAGGCAAGCTATAAGGCTCAACTACAAACTCAAGAAGATCAGTTACAGCATGAGCGTCA
ACGAAATAGTCAACTTTTGAGGATAGTGGAAGTGATGTCCGAACATACTGGACCATAG

Upstream 100 bases:

>100_bases
ATCCTTTCAGCAAAAATGTTTCTCTAATTTGAACCAACCCGCTGAATTTAATTGACATGGTTTTCATTTACCTATTGGAA
ATAGATTTGAGTGATATTGA

Downstream 100 bases:

>100_bases
TAAGCTTTCCAAAATTATGTAGATCGAAAACGTCTCTAGAAGCCTTGTCAATAGTACGTTTGGATCAGTGGCCAAATTCT
GCTGTGATCCATGGAAGATA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MFREDFESVMADQEQVDLLKQGADAWNSWRAKNTAIKIDFSSTNLNNVNLSDFNLNRANLSNSDLSGTDLIGADLSDSNL
SCVNLSHANLIGANLSRANLIGANLSHTNLTDTDLSDSNLSGSDLMGANLSDSDLIGAYLSGADLRDSDLSGANLREVNL
SDSDLSDSDLSDSDLSRANLSGSGLIGADLRDSDLIGAYLSGTDLIGADLSDSDLARSNFSDANLRGVDLSCSNLSNANL
RDADLSNANLSNTNFSGANLSGANLSNANLLNSKLRNALLTRACIQDWKINAETDFAGVVCEYIYLKASQQERRPLTENF
GLDEFAALVQTSLESIDLIFVDGIDWRAFLQSFQKLCSQFGDQAIGIQAIERKGEELIIRLEGSLAVDKSVIETTAKENY
SRELQRMEASYKAQLQTQEDQLQHERQRNSQLLRIVEVMSEHTGP

Sequences:

>Translated_445_residues
MFREDFESVMADQEQVDLLKQGADAWNSWRAKNTAIKIDFSSTNLNNVNLSDFNLNRANLSNSDLSGTDLIGADLSDSNL
SCVNLSHANLIGANLSRANLIGANLSHTNLTDTDLSDSNLSGSDLMGANLSDSDLIGAYLSGADLRDSDLSGANLREVNL
SDSDLSDSDLSDSDLSRANLSGSGLIGADLRDSDLIGAYLSGTDLIGADLSDSDLARSNFSDANLRGVDLSCSNLSNANL
RDADLSNANLSNTNFSGANLSGANLSNANLLNSKLRNALLTRACIQDWKINAETDFAGVVCEYIYLKASQQERRPLTENF
GLDEFAALVQTSLESIDLIFVDGIDWRAFLQSFQKLCSQFGDQAIGIQAIERKGEELIIRLEGSLAVDKSVIETTAKENY
SRELQRMEASYKAQLQTQEDQLQHERQRNSQLLRIVEVMSEHTGP
>Mature_445_residues
MFREDFESVMADQEQVDLLKQGADAWNSWRAKNTAIKIDFSSTNLNNVNLSDFNLNRANLSNSDLSGTDLIGADLSDSNL
SCVNLSHANLIGANLSRANLIGANLSHTNLTDTDLSDSNLSGSDLMGANLSDSDLIGAYLSGADLRDSDLSGANLREVNL
SDSDLSDSDLSDSDLSRANLSGSGLIGADLRDSDLIGAYLSGTDLIGADLSDSDLARSNFSDANLRGVDLSCSNLSNANL
RDADLSNANLSNTNFSGANLSGANLSNANLLNSKLRNALLTRACIQDWKINAETDFAGVVCEYIYLKASQQERRPLTENF
GLDEFAALVQTSLESIDLIFVDGIDWRAFLQSFQKLCSQFGDQAIGIQAIERKGEELIIRLEGSLAVDKSVIETTAKENY
SRELQRMEASYKAQLQTQEDQLQHERQRNSQLLRIVEVMSEHTGP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=142, Percent_Identity=38.0281690140845, Blast_Score=83, Evalue=4e-16,
Organism=Escherichia coli, GI1790502, Length=238, Percent_Identity=27.3109243697479, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221377802, Length=184, Percent_Identity=35.3260869565217, Blast_Score=93, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 48301; Mature: 48301

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFREDFESVMADQEQVDLLKQGADAWNSWRAKNTAIKIDFSSTNLNNVNLSDFNLNRANL
CCHHHHHHHHCCHHHHHHHHHCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
SNSDLSGTDLIGADLSDSNLSCVNLSHANLIGANLSRANLIGANLSHTNLTDTDLSDSNL
CCCCCCCCEEEECCCCCCCCEEEEECCCCEECCCCCCCEEEECCCCCCCCCCCCCCCCCC
SGSDLMGANLSDSDLIGAYLSGADLRDSDLSGANLREVNLSDSDLSDSDLSDSDLSRANL
CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHCCC
SGSGLIGADLRDSDLIGAYLSGTDLIGADLSDSDLARSNFSDANLRGVDLSCSNLSNANL
CCCCEEECCCCCCCCEEEEECCCCEECCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCC
RDADLSNANLSNTNFSGANLSGANLSNANLLNSKLRNALLTRACIQDWKINAETDFAGVV
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
CEYIYLKASQQERRPLTENFGLDEFAALVQTSLESIDLIFVDGIDWRAFLQSFQKLCSQF
HHHHHHCCCCHHCCCCHHCCCHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHH
GDQAIGIQAIERKGEELIIRLEGSLAVDKSVIETTAKENYSRELQRMEASYKAQLQTQED
CCCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
QLQHERQRNSQLLRIVEVMSEHTGP
HHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFREDFESVMADQEQVDLLKQGADAWNSWRAKNTAIKIDFSSTNLNNVNLSDFNLNRANL
CCHHHHHHHHCCHHHHHHHHHCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
SNSDLSGTDLIGADLSDSNLSCVNLSHANLIGANLSRANLIGANLSHTNLTDTDLSDSNL
CCCCCCCCEEEECCCCCCCCEEEEECCCCEECCCCCCCEEEECCCCCCCCCCCCCCCCCC
SGSDLMGANLSDSDLIGAYLSGADLRDSDLSGANLREVNLSDSDLSDSDLSDSDLSRANL
CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHCCC
SGSGLIGADLRDSDLIGAYLSGTDLIGADLSDSDLARSNFSDANLRGVDLSCSNLSNANL
CCCCEEECCCCCCCCEEEEECCCCEECCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCC
RDADLSNANLSNTNFSGANLSGANLSNANLLNSKLRNALLTRACIQDWKINAETDFAGVV
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
CEYIYLKASQQERRPLTENFGLDEFAALVQTSLESIDLIFVDGIDWRAFLQSFQKLCSQF
HHHHHHCCCCHHCCCCHHCCCHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHH
GDQAIGIQAIERKGEELIIRLEGSLAVDKSVIETTAKENYSRELQRMEASYKAQLQTQED
CCCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
QLQHERQRNSQLLRIVEVMSEHTGP
HHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA