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The map label for this gene is yrrC [H]

Identifier: 158338142

GI number: 158338142

Start: 5080585

End: 5082816

Strand: Direct

Name: yrrC [H]

Synonym: AM1_5034

Alternate gene names: 158338142

Gene position: 5080585-5082816 (Clockwise)

Preceding gene: 158338141

Following gene: 158338144

Centisome position: 78.12

GC content: 51.61

Gene sequence:

>2232_bases
ATGACCTACGAGGCCGCTCATCCGACTCATCCCCCGACCGAACAGTTACAAGGGGTTGTAGAGCGGCTAACCTATCATTC
CGATGAATCGGGATATACCGTGGCCCGCTTCAAAGCCCCTAGAACCCGTGAGTTAATCACCATTGTGGGCAGCTTTGCTA
ATATCCAAGCGGGCCAAACCCTCCAAGTTCAGGGGATTTGGCGGGATCATCCTAAATACGGCGCTCAATTTCAAGTCAAA
CAATACCAAGAAACGAAACCCGCTACCCTGACGGGGATTGAAAAGTACCTCGGGAGTGGCTTAATTAAGGGCGTGGGTCC
GGTCACCGCCAAGCGCATCGTCGCTCATTTTGGCCTAGAAACCCTGGATATTATTGAGAACCAGATTGAGCGCCTAGTTG
AAGTCCCCGGCATTGCCAAGAAGCGAGTCAAACTGATTCAGACCGCTTGGGACAGCCAGAAAACCATCAAAGAGGTGATG
GTGTTCCTCCAGGGCCATGGTGTCTCCACTACCTATGCTGTCAAAATCTTTAAGCAGTATGGAGACGAAGCCATCGATAT
CGTCACCCAGAATCCCTACCGACTGGCAACGGATGTCTATGGCATTGGCTTTATCACTGCCGATCAAATTGCCCGTAGCT
TAGGCATTCCTCCTCACTCAGAGTATCGCTATCGCAGTGGCCTCCTACATGTCCTTAGCGAGTCCGCCGATGAAGGGCAT
TGTTATCTACCTCAACCTGAGCTGATCACTCGGGCCGTAAAGCGATTGGCCCTCCCCGAATATCAGCCCAAGCCCGATCA
AGTGGAATATTTGATCCATGCCATGGTCGCGGACGCTGAGCTGATTGTTGAACAGTTTGAACGGGAGGATGCAACGGAAT
TGTTGTGCTATGCTCCTCCCTTCTTTCGAGCGGAGTTTCATTTGTCTCGCCGATTACTCCAATTACTCGCCAATCCCCTA
GAAGTCGATCAGGGTCGAGTCCGTCGTTGGCTCGATCGGTTTATGGAACAAACGAATGTCCATCTCTCGGAGCAACAGCA
GCAGGCTGTGGAGTTGGCCGCTAGCCAGCGAGTTGTCATTCTCACGGGTGGACCGGGCACGGGGAAGACCTTTACCACCC
GGACCATTGTCGCCCTCTGGAAAGCCATGGGGAAAGAGATTGTATTGGCTTCTCCCACCGGACGAGCTGCCCAGCGACTC
AGCGAAGTAACGGGTCACGAAGCGAAAACCATCCATCGCCTTTTAGAGTTTGACCCTAAAACCATGAAGTTTCAGCGGGA
TGTAGACCACCCCATTCCTGCTGATGCGGTGGTGATTGATGAAGCATCCATGCTGGATTTGTTTCTAGCCAATTCCCTAA
TTAAAGCCATTGATACCAATGCCCAACTGTTGCTCGTGGGGGATACGGATCAGCTACCCAGCGTCGGACCCGGAAATGTG
CTGCTGGATCTGATTACCGCCCAGAGAATTCCCGTCATGGAACTAACAGAGGTTTTTCGTCAAGCCCAAGCCAGTCAAAT
TATCCAAAATGCTCATCAGATTAACCAAGGCAAGTTCCCCCATCTAGAGTCTGTCAGCCCTGCGCCCAAGACGGATTGTC
TCTGGCTTGGGGCACCTGAGCCGGAGCAGGGTCAGCAAGCGATTCAAGAACTCATCAATGATCTGATTCCGCAATTGGGA
TATGTGGCGGCACGAGATGTGCAGGTCCTTTGTCCTATGACCAGAGGAGAGGTGGGGACTCGCAAGCTGAATCAAGTTCT
GCAGGCATTGATTAATCCCCCTAGTCCGAGTAAAGCTGAGTTAACCCGAGGGGGGCTGATTCTTAGGGTGGGCGATCGCG
TACTTCAACAGGTCAATGATTACAATCGCGAGGTCTTCAATGGCGATATGGGGGTGATCGAGGCGATTAATCTAGAAGAG
GTTGCCGTGACGGTTCGGTATGCTGAGCGGTCTGTTTCTTATGATCTGGCAGACTTAAATGAAATAGGGTTGGCTTGGGC
CGTCACGATTCATAAGAGCCAGGGGTCAGAATATCCCGTTGTGATCCTGCCTATGTATATGCAGCATTACATTATGCTGA
GCCGCAATCTGCTCTACACAGGTTTGACGAGGGCTAAGAAACTGGCGATTCTAGTGGGTCCCAAAAATGCAATCAGCATG
GCGATTCGACAGGTGAAGGATAAGCAGCGATATACCTTGCTGGACAAGCGGTTGAGCTTTGTTGCTCAGTGA

Upstream 100 bases:

>100_bases
GGGACGGGATTTTTTGCCTGTATGGAAGATCCAACCGGTGCCCATTCCTATTTATTTGAGCTGGCCCGTTAAACTTTTAG
CACGTCAGCGTGTTTGAATT

Downstream 100 bases:

>100_bases
TGAATTCAGCTATGGGGCATTTCTTACCGGACTCTGACGGGAGTCCAGAGTTAAACTCGATTCACGTTTATTGGATTTGA
ATAGGAGATAGGGACTGAAC

Product: RecD/TraA family helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 743; Mature: 742

Protein sequence:

>743_residues
MTYEAAHPTHPPTEQLQGVVERLTYHSDESGYTVARFKAPRTRELITIVGSFANIQAGQTLQVQGIWRDHPKYGAQFQVK
QYQETKPATLTGIEKYLGSGLIKGVGPVTAKRIVAHFGLETLDIIENQIERLVEVPGIAKKRVKLIQTAWDSQKTIKEVM
VFLQGHGVSTTYAVKIFKQYGDEAIDIVTQNPYRLATDVYGIGFITADQIARSLGIPPHSEYRYRSGLLHVLSESADEGH
CYLPQPELITRAVKRLALPEYQPKPDQVEYLIHAMVADAELIVEQFEREDATELLCYAPPFFRAEFHLSRRLLQLLANPL
EVDQGRVRRWLDRFMEQTNVHLSEQQQQAVELAASQRVVILTGGPGTGKTFTTRTIVALWKAMGKEIVLASPTGRAAQRL
SEVTGHEAKTIHRLLEFDPKTMKFQRDVDHPIPADAVVIDEASMLDLFLANSLIKAIDTNAQLLLVGDTDQLPSVGPGNV
LLDLITAQRIPVMELTEVFRQAQASQIIQNAHQINQGKFPHLESVSPAPKTDCLWLGAPEPEQGQQAIQELINDLIPQLG
YVAARDVQVLCPMTRGEVGTRKLNQVLQALINPPSPSKAELTRGGLILRVGDRVLQQVNDYNREVFNGDMGVIEAINLEE
VAVTVRYAERSVSYDLADLNEIGLAWAVTIHKSQGSEYPVVILPMYMQHYIMLSRNLLYTGLTRAKKLAILVGPKNAISM
AIRQVKDKQRYTLLDKRLSFVAQ

Sequences:

>Translated_743_residues
MTYEAAHPTHPPTEQLQGVVERLTYHSDESGYTVARFKAPRTRELITIVGSFANIQAGQTLQVQGIWRDHPKYGAQFQVK
QYQETKPATLTGIEKYLGSGLIKGVGPVTAKRIVAHFGLETLDIIENQIERLVEVPGIAKKRVKLIQTAWDSQKTIKEVM
VFLQGHGVSTTYAVKIFKQYGDEAIDIVTQNPYRLATDVYGIGFITADQIARSLGIPPHSEYRYRSGLLHVLSESADEGH
CYLPQPELITRAVKRLALPEYQPKPDQVEYLIHAMVADAELIVEQFEREDATELLCYAPPFFRAEFHLSRRLLQLLANPL
EVDQGRVRRWLDRFMEQTNVHLSEQQQQAVELAASQRVVILTGGPGTGKTFTTRTIVALWKAMGKEIVLASPTGRAAQRL
SEVTGHEAKTIHRLLEFDPKTMKFQRDVDHPIPADAVVIDEASMLDLFLANSLIKAIDTNAQLLLVGDTDQLPSVGPGNV
LLDLITAQRIPVMELTEVFRQAQASQIIQNAHQINQGKFPHLESVSPAPKTDCLWLGAPEPEQGQQAIQELINDLIPQLG
YVAARDVQVLCPMTRGEVGTRKLNQVLQALINPPSPSKAELTRGGLILRVGDRVLQQVNDYNREVFNGDMGVIEAINLEE
VAVTVRYAERSVSYDLADLNEIGLAWAVTIHKSQGSEYPVVILPMYMQHYIMLSRNLLYTGLTRAKKLAILVGPKNAISM
AIRQVKDKQRYTLLDKRLSFVAQ
>Mature_742_residues
TYEAAHPTHPPTEQLQGVVERLTYHSDESGYTVARFKAPRTRELITIVGSFANIQAGQTLQVQGIWRDHPKYGAQFQVKQ
YQETKPATLTGIEKYLGSGLIKGVGPVTAKRIVAHFGLETLDIIENQIERLVEVPGIAKKRVKLIQTAWDSQKTIKEVMV
FLQGHGVSTTYAVKIFKQYGDEAIDIVTQNPYRLATDVYGIGFITADQIARSLGIPPHSEYRYRSGLLHVLSESADEGHC
YLPQPELITRAVKRLALPEYQPKPDQVEYLIHAMVADAELIVEQFEREDATELLCYAPPFFRAEFHLSRRLLQLLANPLE
VDQGRVRRWLDRFMEQTNVHLSEQQQQAVELAASQRVVILTGGPGTGKTFTTRTIVALWKAMGKEIVLASPTGRAAQRLS
EVTGHEAKTIHRLLEFDPKTMKFQRDVDHPIPADAVVIDEASMLDLFLANSLIKAIDTNAQLLLVGDTDQLPSVGPGNVL
LDLITAQRIPVMELTEVFRQAQASQIIQNAHQINQGKFPHLESVSPAPKTDCLWLGAPEPEQGQQAIQELINDLIPQLGY
VAARDVQVLCPMTRGEVGTRKLNQVLQALINPPSPSKAELTRGGLILRVGDRVLQQVNDYNREVFNGDMGVIEAINLEEV
AVTVRYAERSVSYDLADLNEIGLAWAVTIHKSQGSEYPVVILPMYMQHYIMLSRNLLYTGLTRAKKLAILVGPKNAISMA
IRQVKDKQRYTLLDKRLSFVAQ

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=479, Percent_Identity=28.39248434238, Blast_Score=110, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 83037; Mature: 82905

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYEAAHPTHPPTEQLQGVVERLTYHSDESGYTVARFKAPRTRELITIVGSFANIQAGQT
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCE
LQVQGIWRDHPKYGAQFQVKQYQETKPATLTGIEKYLGSGLIKGVGPVTAKRIVAHFGLE
EEEEEEECCCCCCCCEEEEHHHCCCCCCHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCH
TLDIIENQIERLVEVPGIAKKRVKLIQTAWDSQKTIKEVMVFLQGHGVSTTYAVKIFKQY
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GDEAIDIVTQNPYRLATDVYGIGFITADQIARSLGIPPHSEYRYRSGLLHVLSESADEGH
CCCEEEEEECCCCEEHHHHHHEEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCE
CYLPQPELITRAVKRLALPEYQPKPDQVEYLIHAMVADAELIVEQFEREDATELLCYAPP
EECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCC
FFRAEFHLSRRLLQLLANPLEVDQGRVRRWLDRFMEQTNVHLSEQQQQAVELAASQRVVI
HHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE
LTGGPGTGKTFTTRTIVALWKAMGKEIVLASPTGRAAQRLSEVTGHEAKTIHRLLEFDPK
EECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCH
TMKFQRDVDHPIPADAVVIDEASMLDLFLANSLIKAIDTNAQLLLVGDTDQLPSVGPGNV
HHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHH
LLDLITAQRIPVMELTEVFRQAQASQIIQNAHQINQGKFPHLESVSPAPKTDCLWLGAPE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCC
PEQGQQAIQELINDLIPQLGYVAARDVQVLCPMTRGEVGTRKLNQVLQALINPPSPSKAE
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHH
LTRGGLILRVGDRVLQQVNDYNREVFNGDMGVIEAINLEEVAVTVRYAERSVSYDLADLN
HHCCCEEEEHHHHHHHHHHHHCHHHHCCCCCCEEECCHHHHHEEEEEHHHHCCCCHHHHH
EIGLAWAVTIHKSQGSEYPVVILPMYMQHYIMLSRNLLYTGLTRAKKLAILVGPKNAISM
HCCEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHH
AIRQVKDKQRYTLLDKRLSFVAQ
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TYEAAHPTHPPTEQLQGVVERLTYHSDESGYTVARFKAPRTRELITIVGSFANIQAGQT
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCE
LQVQGIWRDHPKYGAQFQVKQYQETKPATLTGIEKYLGSGLIKGVGPVTAKRIVAHFGLE
EEEEEEECCCCCCCCEEEEHHHCCCCCCHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCH
TLDIIENQIERLVEVPGIAKKRVKLIQTAWDSQKTIKEVMVFLQGHGVSTTYAVKIFKQY
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GDEAIDIVTQNPYRLATDVYGIGFITADQIARSLGIPPHSEYRYRSGLLHVLSESADEGH
CCCEEEEEECCCCEEHHHHHHEEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCE
CYLPQPELITRAVKRLALPEYQPKPDQVEYLIHAMVADAELIVEQFEREDATELLCYAPP
EECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCC
FFRAEFHLSRRLLQLLANPLEVDQGRVRRWLDRFMEQTNVHLSEQQQQAVELAASQRVVI
HHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE
LTGGPGTGKTFTTRTIVALWKAMGKEIVLASPTGRAAQRLSEVTGHEAKTIHRLLEFDPK
EECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCH
TMKFQRDVDHPIPADAVVIDEASMLDLFLANSLIKAIDTNAQLLLVGDTDQLPSVGPGNV
HHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHH
LLDLITAQRIPVMELTEVFRQAQASQIIQNAHQINQGKFPHLESVSPAPKTDCLWLGAPE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCC
PEQGQQAIQELINDLIPQLGYVAARDVQVLCPMTRGEVGTRKLNQVLQALINPPSPSKAE
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHH
LTRGGLILRVGDRVLQQVNDYNREVFNGDMGVIEAINLEEVAVTVRYAERSVSYDLADLN
HHCCCEEEEHHHHHHHHHHHHCHHHHCCCCCCEEECCHHHHHEEEEEHHHHCCCCHHHHH
EIGLAWAVTIHKSQGSEYPVVILPMYMQHYIMLSRNLLYTGLTRAKKLAILVGPKNAISM
HCCEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHH
AIRQVKDKQRYTLLDKRLSFVAQ
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]