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The map label for this gene is secY [H]

Identifier: 158337828

GI number: 158337828

Start: 4737953

End: 4739260

Strand: Direct

Name: secY [H]

Synonym: AM1_4714

Alternate gene names: 158337828

Gene position: 4737953-4739260 (Clockwise)

Preceding gene: 158337827

Following gene: 158337829

Centisome position: 72.85

GC content: 47.32

Gene sequence:

>1308_bases
ATGGTTGTCAGCAGAGGTAAAACACCATCCGCCCAAGAAACCTTTATGCAAATGGCCCAGGCAGCTGGGCTTAGAGGTCG
GGTCTTTATCACCCTGGGACTGTTGATTTTGGTCCGGTTGGGTATTCGTCTTCCGGTTCCAGGTATCAACCGTGCTGCTT
TTACATCAACCTTTGCTGGCAACCCTGTCTTTGGCTTTTTAGACTTCTTCTCTGGTGGTGGTTTTTCTGCCCTAGGGATT
TTTGCTTTAGGGATTATTCCCTTTATTAATGCCTCGATCATTTTGCAGCTGTTGACCGCTGCATTGCCATCCCTGGAGCG
TCTACAAAAAGATGAAGGGGAAGCGGGTCGCCGCAAAATTTCCCAAATCACTCGCTACGTGGCTTTGGGATGGGCCATTA
TCCAAAGTACTGGATTTGCCATCTTAATCAATAGTGCCGAGGGTGTTGTGTTCAATCCCGGCATTGTGTTTATCGTTCAG
ATGGTGGTGGCCTTAACGGCTGGCTCCATGTTTGTGATGTGGGTTGGTGAATTGATTACGGAGAGAGGAGTAGGAAATGG
CGCTTCTTTGCTCATCTTTTTGAGTATTGTTTCGGGTCTACCTAGCACCTTAGGCAATGCGTTGCAGATTGCTGAACAAG
GCGAGGTCTCTAAAGTCATCATCTTGATTTCTGTTTTCATCTTGATGATTGTCGGCATTGTGTTCGTTCAAGAAGGCACT
CGCAGAATTCCTATTGTCTATGCTCGCCGCCAAGTGGGACGACGAACCTATCAGGAACAGAAGAGTTATCTGCCCCTCCG
CTTAAACTCTGGTGGAGTGATGCCCATTATTTTTGCCTCGGCTATGCTGATTTTGCCCGGCACCTTGGCGGGGCTAACGA
ACAATGCAACTATCATTGAGTTTGCTGGATATTTAAGTCCCAATAGTTCTCTACCTTGGGTCTATGTGATTTTCTATCTG
TCGATGATTGTCTTCTTCAGCTACTTCTACGCATCTTTGGTGGTTAACCCCATTGATATGTCCCAGAACTTGAAGAAGAT
GGGGGCCAGTATTCCAGGGATTCGTCCTGGGCGGGCAACGACAGAATATGTTGAAAAGGTTTTGAATCGATTAACGCTGT
TGGGTGCTTTCTTCTTGGGAGCCGTTGTGTTGGTTCCAGTGGCCGCCGAGAGAGTGGTTGGTGGCGGTATCTTTTCTGGT
TTTGGTGCAACATCACTTCTGATTTTGGTGGGTGTTGCGATTGATACGGCTAAGCAAATTCAGACCTATGTGATTTCCCA
ACGGTATGAAGGGATGGTGAAACAGTAG

Upstream 100 bases:

>100_bases
GTCTGCAATCGCCAAAGTCGAAGGGGCCGGTGGTAGCTTTCAGTCTACTGAGTCTTAACATCTTTCATTTTTAATCGGCT
TTTAGAGAGGTATCCCTGAC

Downstream 100 bases:

>100_bases
TGGCACGTTTAATTCTGTTTGGGCCACCTGGGGCAGGCAAAGGTACGCAAGCCGTTACCCTCGCAGCAGACTTTAGTATT
CCTCATATTTCGACGGGAGA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MVVSRGKTPSAQETFMQMAQAAGLRGRVFITLGLLILVRLGIRLPVPGINRAAFTSTFAGNPVFGFLDFFSGGGFSALGI
FALGIIPFINASIILQLLTAALPSLERLQKDEGEAGRRKISQITRYVALGWAIIQSTGFAILINSAEGVVFNPGIVFIVQ
MVVALTAGSMFVMWVGELITERGVGNGASLLIFLSIVSGLPSTLGNALQIAEQGEVSKVIILISVFILMIVGIVFVQEGT
RRIPIVYARRQVGRRTYQEQKSYLPLRLNSGGVMPIIFASAMLILPGTLAGLTNNATIIEFAGYLSPNSSLPWVYVIFYL
SMIVFFSYFYASLVVNPIDMSQNLKKMGASIPGIRPGRATTEYVEKVLNRLTLLGAFFLGAVVLVPVAAERVVGGGIFSG
FGATSLLILVGVAIDTAKQIQTYVISQRYEGMVKQ

Sequences:

>Translated_435_residues
MVVSRGKTPSAQETFMQMAQAAGLRGRVFITLGLLILVRLGIRLPVPGINRAAFTSTFAGNPVFGFLDFFSGGGFSALGI
FALGIIPFINASIILQLLTAALPSLERLQKDEGEAGRRKISQITRYVALGWAIIQSTGFAILINSAEGVVFNPGIVFIVQ
MVVALTAGSMFVMWVGELITERGVGNGASLLIFLSIVSGLPSTLGNALQIAEQGEVSKVIILISVFILMIVGIVFVQEGT
RRIPIVYARRQVGRRTYQEQKSYLPLRLNSGGVMPIIFASAMLILPGTLAGLTNNATIIEFAGYLSPNSSLPWVYVIFYL
SMIVFFSYFYASLVVNPIDMSQNLKKMGASIPGIRPGRATTEYVEKVLNRLTLLGAFFLGAVVLVPVAAERVVGGGIFSG
FGATSLLILVGVAIDTAKQIQTYVISQRYEGMVKQ
>Mature_435_residues
MVVSRGKTPSAQETFMQMAQAAGLRGRVFITLGLLILVRLGIRLPVPGINRAAFTSTFAGNPVFGFLDFFSGGGFSALGI
FALGIIPFINASIILQLLTAALPSLERLQKDEGEAGRRKISQITRYVALGWAIIQSTGFAILINSAEGVVFNPGIVFIVQ
MVVALTAGSMFVMWVGELITERGVGNGASLLIFLSIVSGLPSTLGNALQIAEQGEVSKVIILISVFILMIVGIVFVQEGT
RRIPIVYARRQVGRRTYQEQKSYLPLRLNSGGVMPIIFASAMLILPGTLAGLTNNATIIEFAGYLSPNSSLPWVYVIFYL
SMIVFFSYFYASLVVNPIDMSQNLKKMGASIPGIRPGRATTEYVEKVLNRLTLLGAFFLGAVVLVPVAAERVVGGGIFSG
FGATSLLILVGVAIDTAKQIQTYVISQRYEGMVKQ

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=423, Percent_Identity=42.5531914893617, Blast_Score=295, Evalue=3e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 46748; Mature: 46748

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVSRGKTPSAQETFMQMAQAAGLRGRVFITLGLLILVRLGIRLPVPGINRAAFTSTFAG
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCC
NPVFGFLDFFSGGGFSALGIFALGIIPFINASIILQLLTAALPSLERLQKDEGEAGRRKI
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SQITRYVALGWAIIQSTGFAILINSAEGVVFNPGIVFIVQMVVALTAGSMFVMWVGELIT
HHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHH
ERGVGNGASLLIFLSIVSGLPSTLGNALQIAEQGEVSKVIILISVFILMIVGIVFVQEGT
HCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RRIPIVYARRQVGRRTYQEQKSYLPLRLNSGGVMPIIFASAMLILPGTLAGLTNNATIIE
CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCHHHCCCCCCEEEE
FAGYLSPNSSLPWVYVIFYLSMIVFFSYFYASLVVNPIDMSQNLKKMGASIPGIRPGRAT
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCH
TEYVEKVLNRLTLLGAFFLGAVVLVPVAAERVVGGGIFSGFGATSLLILVGVAIDTAKQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
QTYVISQRYEGMVKQ
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MVVSRGKTPSAQETFMQMAQAAGLRGRVFITLGLLILVRLGIRLPVPGINRAAFTSTFAG
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCC
NPVFGFLDFFSGGGFSALGIFALGIIPFINASIILQLLTAALPSLERLQKDEGEAGRRKI
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SQITRYVALGWAIIQSTGFAILINSAEGVVFNPGIVFIVQMVVALTAGSMFVMWVGELIT
HHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHH
ERGVGNGASLLIFLSIVSGLPSTLGNALQIAEQGEVSKVIILISVFILMIVGIVFVQEGT
HCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RRIPIVYARRQVGRRTYQEQKSYLPLRLNSGGVMPIIFASAMLILPGTLAGLTNNATIIE
CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCHHHCCCCCCEEEE
FAGYLSPNSSLPWVYVIFYLSMIVFFSYFYASLVVNPIDMSQNLKKMGASIPGIRPGRAT
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCH
TEYVEKVLNRLTLLGAFFLGAVVLVPVAAERVVGGGIFSGFGATSLLILVGVAIDTAKQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
QTYVISQRYEGMVKQ
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1420358 [H]