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The map label for this gene is psbV

Identifier: 158337012

GI number: 158337012

Start: 3936566

End: 3937054

Strand: Direct

Name: psbV

Synonym: AM1_3885

Alternate gene names: 158337012

Gene position: 3936566-3937054 (Clockwise)

Preceding gene: 158337011

Following gene: 158337013

Centisome position: 60.53

GC content: 46.22

Gene sequence:

>489_bases
ATGCTGAAAAGATACATGTTGCTGGCGGTGGCTACAGTATTTTTTGCTTTTCAAGTATTAACCAGTACTGCAACTGCTGC
TGAATTAGATGATGCGACTCGAACAGTTGCGTTAAATGAGGGGAGTACCGTTACTCTATCCACTCAGCAAGCGAAAGAGG
GCCAGCGCTTATTCAACTTTGCCTGTGCAAACTGCCACATTGGTGGTGATACAAAAACTAACCCCAGTATCAACTTGTCT
TCAGCTAGCTTGGCTGGCGCTAACCCCCGACGTGACAACGTTGAAGGTCTTGTGGATTACATGAACAATCCCACAACCTA
CGATGGTTTTGACACCATTTCTGAAGTGCATCCTAGTACTCAAAGTACGGATGTCTTCCCTCTAATGAGAAACCTGTCTG
ATGAGGATCTATTCGACATCGCAGGTCATATTCTCATCCAGCCTTCAGTGATCGGTGATCAGTGGGGTGGCGGTAAAGCC
AACCGTTAA

Upstream 100 bases:

>100_bases
GTCACCAGCAACGGGCAGGTTTAGATAGAGTACCCAGTTCTGTAGAGTGGATTTAACTGTGTTGAGAGCCTGATAATTAA
ACGAAATTGAAAGGAGAACT

Downstream 100 bases:

>100_bases
GTGTCCATTGGTTGTTGACCAGTATGAACGACGTTATCTTTATAAAGTTCATATTCGAGGCGGGCATCAAATGCTGAAAT
CGTGGCTCAAATGTTGTTTT

Product: cytochrome c550 subunit of photosystem II PsbV

Products: NA

Alternate protein names: Cytochrome c550; Low-potential cytochrome c

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MLKRYMLLAVATVFFAFQVLTSTATAAELDDATRTVALNEGSTVTLSTQQAKEGQRLFNFACANCHIGGDTKTNPSINLS
SASLAGANPRRDNVEGLVDYMNNPTTYDGFDTISEVHPSTQSTDVFPLMRNLSDEDLFDIAGHILIQPSVIGDQWGGGKA
NR

Sequences:

>Translated_162_residues
MLKRYMLLAVATVFFAFQVLTSTATAAELDDATRTVALNEGSTVTLSTQQAKEGQRLFNFACANCHIGGDTKTNPSINLS
SASLAGANPRRDNVEGLVDYMNNPTTYDGFDTISEVHPSTQSTDVFPLMRNLSDEDLFDIAGHILIQPSVIGDQWGGGKA
NR
>Mature_162_residues
MLKRYMLLAVATVFFAFQVLTSTATAAELDDATRTVALNEGSTVTLSTQQAKEGQRLFNFACANCHIGGDTKTNPSINLS
SASLAGANPRRDNVEGLVDYMNNPTTYDGFDTISEVHPSTQSTDVFPLMRNLSDEDLFDIAGHILIQPSVIGDQWGGGKA
NR

Specific function: Low-potential cytochrome c that plays a role in the oxygen-evolving complex of photosystem II

COG id: NA

COG function: NA

Gene ontology:
GO:0005506: Cytochrome c-550
GO:0006810: Cytochrome c-550
GO:0009055: Cytochrome c-550
GO:0009523: Cytochrome c-550
GO:0009579: Cytochrome c-550
GO:0015979: Cytochrome c-550
GO:0016020: Cytochrome c-550
GO:0020037: Cytochrome c-550
GO:0022900: Cytochrome c-550
GO:0022904: Cytochrome c-550
GO:0042651: Cytochrome c-550
GO:0046872: Cytochrome c-550

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side. Note=Associated with photosystem II at the lumenal side of the thylakoid membrane (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PsbV subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CY550_ACAM1 (B0C731)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001518187.1
- ProteinModelPortal:   B0C731
- SMR:   B0C731
- GeneID:   5682689
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_3885
- HOGENOM:   HBG285698
- OMA:   WGGGKIY
- BioCyc:   AMAR329726:AM1_3885-MONOMER
- GO:   GO:0015979
- GO:   GO:0006810
- HAMAP:   MF_01378
- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR016003
- InterPro:   IPR017851
- Gene3D:   G3DSA:1.10.760.10
- PIRSF:   PIRSF005890
- TIGRFAMs:   TIGR03045

Pfam domain/function: PF00034 Cytochrom_C; SSF46626 Cytochrome_c

EC number: NA

Molecular weight: Translated: 17476; Mature: 17476

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS51007 CYTC

Important sites: BINDING 62-62 BINDING 65-65

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRYMLLAVATVFFAFQVLTSTATAAELDDATRTVALNEGSTVTLSTQQAKEGQRLFNF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHHHHHHHHH
ACANCHIGGDTKTNPSINLSSASLAGANPRRDNVEGLVDYMNNPTTYDGFDTISEVHPST
HHCCEEECCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCC
QSTDVFPLMRNLSDEDLFDIAGHILIQPSVIGDQWGGGKANR
CCCHHHHHHHCCCCCHHHHHHCCEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKRYMLLAVATVFFAFQVLTSTATAAELDDATRTVALNEGSTVTLSTQQAKEGQRLFNF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHHHHHHHHH
ACANCHIGGDTKTNPSINLSSASLAGANPRRDNVEGLVDYMNNPTTYDGFDTISEVHPST
HHCCEEECCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCC
QSTDVFPLMRNLSDEDLFDIAGHILIQPSVIGDQWGGGKANR
CCCHHHHHHHCCCCCHHHHHHCCEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA