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The map label for this gene is opuCC [H]

Identifier: 158336793

GI number: 158336793

Start: 3717689

End: 3718630

Strand: Reverse

Name: opuCC [H]

Synonym: AM1_3661

Alternate gene names: 158336793

Gene position: 3718630-3717689 (Counterclockwise)

Preceding gene: 158336794

Following gene: 158336792

Centisome position: 57.18

GC content: 50.11

Gene sequence:

>942_bases
TTGCAATTGGTTAAATTATCTCAGACACCTTGGGAGCGGTTCGTATCTTTAGTTGCGATCGCAGTCCTCACTTGCTTCAC
TATCGTGGCCTGCCAGGTCGGCAGTGGCGACGAAGCCACCGATAATGTCATTCGAGTGGGATCTAAAGACTTTACAGAGC
AATTTATTTTAGGTGAGCTCTATGCCCAACTCCTGGAAGACCAAGATTTAGCAGTCGAACGGAAATTCAACCTTGGGGGT
GCCCCCATTGCCCAAGCCGGACTCGTCAAGGGCGATATCGACCTCTATCCGGAATACACGGGCACAGCCTTATTGACCAT
CTTAAAAGAACCCAGTAATACTAACCCCCAACAGGTGTTTGATACGGTTGCGAAAGCCTACGAGAAAGACTTCAACTTAG
TGTGGCTCAATCCAGCCCCCATGAATAACACTCAGGCATTAGTCGTAACCCCCGCAACCGCTAAAAAGTATCAACTAAAA
ACCATTTCTGACTTTGCCAAGCAAGCGACAAAACTGCGAATGATTGGCCCGCCCGAATTCGCAGCTCGGGAAGATGGCTT
ACCCGGCCTTCAAGCTGCCTACGGCGCTTTCAAACTCAAAGACTATATCGCCACGGATCCAGGCCTCCGTTACCAGGCTT
TGCAGTCTGATCAGGCAGACATTGCCGTTGGCTTTGGTACCGATGGAGAAATTGATGCCCTAAATTTGGTGGTTTTAAAA
GATGATCAAGGCTTGTTTCCGCCTTACCAAGTGGCACCCGTCGTCCGGCAGCCCGTCTTAGAGGCCTATGCTAAAGTCAA
AGGTACCCTCAATGCCCTCGCCCCCAAGTTAACGGATGAAACCATGCGTCGTCTCAACTATGAGGTTAGCGGCAACCGCC
AAGAACCTCGAACCGTAGCCCAACAGTTCCTTCAAGAGACAGGACTTATCTCTCCGACCTAA

Upstream 100 bases:

>100_bases
CCCTCTGACCTGACGATCAATCTCTCCCAGTCTGGCTCTTGCCTCAGTCTCGGAAGGTGGAATAATAGCAACACATGTTG
GTTGAAGGTAAAGGGTAATC

Downstream 100 bases:

>100_bases
GCTGGTTTAGGCTCTGTGTTAGACATGGACATTTCCCTTCACAATCCAGCATCGGATCAAGGCAAGCTTGTCGCCTTCCC
TCTCACAGAAACGGCTCAGC

Product: glycine/ betaine ABC transporter periplasmic component

Products: NA

Alternate protein names: Osmoprotectant-binding protein [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MQLVKLSQTPWERFVSLVAIAVLTCFTIVACQVGSGDEATDNVIRVGSKDFTEQFILGELYAQLLEDQDLAVERKFNLGG
APIAQAGLVKGDIDLYPEYTGTALLTILKEPSNTNPQQVFDTVAKAYEKDFNLVWLNPAPMNNTQALVVTPATAKKYQLK
TISDFAKQATKLRMIGPPEFAAREDGLPGLQAAYGAFKLKDYIATDPGLRYQALQSDQADIAVGFGTDGEIDALNLVVLK
DDQGLFPPYQVAPVVRQPVLEAYAKVKGTLNALAPKLTDETMRRLNYEVSGNRQEPRTVAQQFLQETGLISPT

Sequences:

>Translated_313_residues
MQLVKLSQTPWERFVSLVAIAVLTCFTIVACQVGSGDEATDNVIRVGSKDFTEQFILGELYAQLLEDQDLAVERKFNLGG
APIAQAGLVKGDIDLYPEYTGTALLTILKEPSNTNPQQVFDTVAKAYEKDFNLVWLNPAPMNNTQALVVTPATAKKYQLK
TISDFAKQATKLRMIGPPEFAAREDGLPGLQAAYGAFKLKDYIATDPGLRYQALQSDQADIAVGFGTDGEIDALNLVVLK
DDQGLFPPYQVAPVVRQPVLEAYAKVKGTLNALAPKLTDETMRRLNYEVSGNRQEPRTVAQQFLQETGLISPT
>Mature_313_residues
MQLVKLSQTPWERFVSLVAIAVLTCFTIVACQVGSGDEATDNVIRVGSKDFTEQFILGELYAQLLEDQDLAVERKFNLGG
APIAQAGLVKGDIDLYPEYTGTALLTILKEPSNTNPQQVFDTVAKAYEKDFNLVWLNPAPMNNTQALVVTPATAKKYQLK
TISDFAKQATKLRMIGPPEFAAREDGLPGLQAAYGAFKLKDYIATDPGLRYQALQSDQADIAVGFGTDGEIDALNLVVLK
DDQGLFPPYQVAPVVRQPVLEAYAKVKGTLNALAPKLTDETMRRLNYEVSGNRQEPRTVAQQFLQETGLISPT

Specific function: Member of a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine, and choline [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=277, Percent_Identity=32.4909747292419, Blast_Score=145, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 34260; Mature: 34260

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLVKLSQTPWERFVSLVAIAVLTCFTIVACQVGSGDEATDNVIRVGSKDFTEQFILGEL
CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCHHHHHHHHHHHH
YAQLLEDQDLAVERKFNLGGAPIAQAGLVKGDIDLYPEYTGTALLTILKEPSNTNPQQVF
HHHHHCCCCCEEEEECCCCCCCHHHCCCEECCCEECCCCCCCEEEEEEECCCCCCHHHHH
DTVAKAYEKDFNLVWLNPAPMNNTQALVVTPATAKKYQLKTISDFAKQATKLRMIGPPEF
HHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHEEEECCCCCC
AAREDGLPGLQAAYGAFKLKDYIATDPGLRYQALQSDQADIAVGFGTDGEIDALNLVVLK
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHCCCCCCEEEEECCCCCCCEEEEEEEE
DDQGLFPPYQVAPVVRQPVLEAYAKVKGTLNALAPKLTDETMRRLNYEVSGNRQEPRTVA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHH
QQFLQETGLISPT
HHHHHHCCCCCCC
>Mature Secondary Structure
MQLVKLSQTPWERFVSLVAIAVLTCFTIVACQVGSGDEATDNVIRVGSKDFTEQFILGEL
CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCHHHHHHHHHHHH
YAQLLEDQDLAVERKFNLGGAPIAQAGLVKGDIDLYPEYTGTALLTILKEPSNTNPQQVF
HHHHHCCCCCEEEEECCCCCCCHHHCCCEECCCEECCCCCCCEEEEEEECCCCCCHHHHH
DTVAKAYEKDFNLVWLNPAPMNNTQALVVTPATAKKYQLKTISDFAKQATKLRMIGPPEF
HHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHEEEECCCCCC
AAREDGLPGLQAAYGAFKLKDYIATDPGLRYQALQSDQADIAVGFGTDGEIDALNLVVLK
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHCCCCCCEEEEECCCCCCCEEEEEEEE
DDQGLFPPYQVAPVVRQPVLEAYAKVKGTLNALAPKLTDETMRRLNYEVSGNRQEPRTVA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHH
QQFLQETGLISPT
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]