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The map label for this gene is rcaC [H]

Identifier: 158336600

GI number: 158336600

Start: 3500502

End: 3501185

Strand: Reverse

Name: rcaC [H]

Synonym: AM1_3466

Alternate gene names: 158336600

Gene position: 3501185-3500502 (Counterclockwise)

Preceding gene: 158336601

Following gene: 158336599

Centisome position: 53.83

GC content: 48.39

Gene sequence:

>684_bases
ATGAGAATTCTGCTAGTTGAGGATGATGATCGGATTGCCAAGCCCCTAGCCGAAGATTTGCGTCATCAACATTACGTCGT
CGATGTAGCAGCAGATGGTGAAAGCGGCTGGCACTATACCCAAACGGCTGACTATGAGCTGATTCTATTGGATCTTATGC
TGCCGCGTTTGGATGGGATTAGTCTCTGTCAACAATTGCGTCGCTCAGGATATAGCGGGTTTGTGTTGATGCTCACCGCC
AAGGATACCTTGACCGATAAAGTGATGGGCTTAGACGCGGGTGCCGATGACTATGTGGTCAAACCGTTTGAGTTAGATGA
ATTGGCTGCTCGCATCCGCGCGTTATGTCGTCGTCCCCCTCAGATACAGCCTTCCATTCTGAAACAGGGTGCTTTACAAC
TTGATCCGATTCACCATCATGCTCACTATGGTGAGACCTTGCTAGATTTAACGCCCAAAGAATATATTCTGCTAGAACAT
TTACTTCAACATCCGGGGCAAGTCTTTACCCGCGCTATGTTGCTAGATCGTTTATGGGAGCTGGATCGCGCCTCAAGTGA
GGGCACGGTCAAAACGCATATTAGTAACCTGCGCTGTAAATTAAAAGCAGCCGGAGGGTCTGACCAGCTAATTGAAACGC
TTTATGGTGTGGGCTATCGTCTGAATCCGCTTCTTCATTCCTAG

Upstream 100 bases:

>100_bases
CTGCTGACTCACCCAACAGGATCCAGAGCAAAAAGGAACAATTCATGGCTACCATCTGGGCAATAAACACGATGCATCAT
CATCTAGAGAGAACCACCAC

Downstream 100 bases:

>100_bases
AGGTTATGCATTGTTTCGGAAAGTTCGATTGCAGCTCTTAGGATCCTATCTGATGGTTTTGGCGGGGATTATGGTTGTGT
TTGCGATCGCAATCCGTACC

Product: two-component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MRILLVEDDDRIAKPLAEDLRHQHYVVDVAADGESGWHYTQTADYELILLDLMLPRLDGISLCQQLRRSGYSGFVLMLTA
KDTLTDKVMGLDAGADDYVVKPFELDELAARIRALCRRPPQIQPSILKQGALQLDPIHHHAHYGETLLDLTPKEYILLEH
LLQHPGQVFTRAMLLDRLWELDRASSEGTVKTHISNLRCKLKAAGGSDQLIETLYGVGYRLNPLLHS

Sequences:

>Translated_227_residues
MRILLVEDDDRIAKPLAEDLRHQHYVVDVAADGESGWHYTQTADYELILLDLMLPRLDGISLCQQLRRSGYSGFVLMLTA
KDTLTDKVMGLDAGADDYVVKPFELDELAARIRALCRRPPQIQPSILKQGALQLDPIHHHAHYGETLLDLTPKEYILLEH
LLQHPGQVFTRAMLLDRLWELDRASSEGTVKTHISNLRCKLKAAGGSDQLIETLYGVGYRLNPLLHS
>Mature_227_residues
MRILLVEDDDRIAKPLAEDLRHQHYVVDVAADGESGWHYTQTADYELILLDLMLPRLDGISLCQQLRRSGYSGFVLMLTA
KDTLTDKVMGLDAGADDYVVKPFELDELAARIRALCRRPPQIQPSILKQGALQLDPIHHHAHYGETLLDLTPKEYILLEH
LLQHPGQVFTRAMLLDRLWELDRASSEGTVKTHISNLRCKLKAAGGSDQLIETLYGVGYRLNPLLHS

Specific function: Required for chromatic adaptation. Thought to be a positive regulator of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 response regulatory domains [H]

Homologues:

Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=36.9369369369369, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI1788394, Length=223, Percent_Identity=38.5650224215247, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI1789402, Length=222, Percent_Identity=39.1891891891892, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI87082012, Length=219, Percent_Identity=36.986301369863, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=40.7239819004525, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI1786599, Length=224, Percent_Identity=37.0535714285714, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=36.6071428571429, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1789809, Length=229, Percent_Identity=31.4410480349345, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI2367329, Length=231, Percent_Identity=39.3939393939394, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=31.5068493150685, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=34.6846846846847, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787229, Length=228, Percent_Identity=32.0175438596491, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=28.3842794759825, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI145693140, Length=235, Percent_Identity=28.5106382978723, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=32.7102803738318, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR008207
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01627 Hpt; PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25640; Mature: 25640

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILLVEDDDRIAKPLAEDLRHQHYVVDVAADGESGWHYTQTADYELILLDLMLPRLDGI
CEEEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHH
SLCQQLRRSGYSGFVLMLTAKDTLTDKVMGLDAGADDYVVKPFELDELAARIRALCRRPP
HHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHCCCC
QIQPSILKQGALQLDPIHHHAHYGETLLDLTPKEYILLEHLLQHPGQVFTRAMLLDRLWE
CCCHHHHHCCCCEECCHHHHHHCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LDRASSEGTVKTHISNLRCKLKAAGGSDQLIETLYGVGYRLNPLLHS
HHCCCCCCCHHEECCCCEEEEEECCCHHHHHHHHHHCCEECCCCCCC
>Mature Secondary Structure
MRILLVEDDDRIAKPLAEDLRHQHYVVDVAADGESGWHYTQTADYELILLDLMLPRLDGI
CEEEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHH
SLCQQLRRSGYSGFVLMLTAKDTLTDKVMGLDAGADDYVVKPFELDELAARIRALCRRPP
HHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHCCCC
QIQPSILKQGALQLDPIHHHAHYGETLLDLTPKEYILLEHLLQHPGQVFTRAMLLDRLWE
CCCHHHHHCCCCEECCHHHHHHCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LDRASSEGTVKTHISNLRCKLKAAGGSDQLIETLYGVGYRLNPLLHS
HHCCCCCCCHHEECCCCEEEEEECCCHHHHHHHHHHCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1409650 [H]