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The map label for this gene is exbD [C]

Identifier: 158336546

GI number: 158336546

Start: 3442101

End: 3442505

Strand: Reverse

Name: exbD [C]

Synonym: AM1_3410

Alternate gene names: 158336546

Gene position: 3442505-3442101 (Counterclockwise)

Preceding gene: 158336547

Following gene: 158336544

Centisome position: 52.93

GC content: 48.15

Gene sequence:

>405_bases
ATGCGCTTACCCGATGATCCAAGTCCATCGGCTCAAATCAATATTGTGCCGATGATTGATGTTATTTTTGCCATTCTGTC
CTTTTTTATCATTGCCACGTTATTCCTCAACCGCAGTGATGCCTTACCTGTTAATTTGCCCCAGGCAAAAACAGTAAAAC
CACAGCTATCGACGAAGGTGACGGTCACCATTGGTGAGACGGGGGATTTAGCACTCAACCGAGAACCGATCCAGCTGGAT
GCTCTAGTAACAGAAGTTCAAGACTTAACGGAAACAACCGAAAAGGTCGTAGTGATCATCCATGCGGATGAGCAAGTGGG
GCATGGCCGCGTTGTGACGGTGATGGATCGCATTCGCGAAATTGAAGGCGCAAAGCTGGCCATTGCCGCCACAAAGAAAC
CATGA

Upstream 100 bases:

>100_bases
TTTCGCAGTTTATACCAGCGCCAGTTGGCTTTTATTCAAGAGCATGGGGGACAGCTGGAGTTGCTGTATCGTCACCGCTA
TGAACGAGGCAGGGTGAATC

Downstream 100 bases:

>100_bases
CGACTACCGGATCACGCCACAACCAGCGTGTCAGAGGCCAAAAAATGGGCCAGATGATAGGCTCGCTCTTCTGTCTCAAG
CAGCATCTGCTCATATAGAT

Product: biopolymer transport ExbD/TolR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MRLPDDPSPSAQINIVPMIDVIFAILSFFIIATLFLNRSDALPVNLPQAKTVKPQLSTKVTVTIGETGDLALNREPIQLD
ALVTEVQDLTETTEKVVVIIHADEQVGHGRVVTVMDRIREIEGAKLAIAATKKP

Sequences:

>Translated_134_residues
MRLPDDPSPSAQINIVPMIDVIFAILSFFIIATLFLNRSDALPVNLPQAKTVKPQLSTKVTVTIGETGDLALNREPIQLD
ALVTEVQDLTETTEKVVVIIHADEQVGHGRVVTVMDRIREIEGAKLAIAATKKP
>Mature_134_residues
MRLPDDPSPSAQINIVPMIDVIFAILSFFIIATLFLNRSDALPVNLPQAKTVKPQLSTKVTVTIGETGDLALNREPIQLD
ALVTEVQDLTETTEKVVVIIHADEQVGHGRVVTVMDRIREIEGAKLAIAATKKP

Specific function: Involved In The Tonb-Dependent Energy-Dependent Transport Of Various Receptor-Bound Substrates. [C]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14606; Mature: 14606

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPDDPSPSAQINIVPMIDVIFAILSFFIIATLFLNRSDALPVNLPQAKTVKPQLSTKV
CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCEEE
TVTIGETGDLALNREPIQLDALVTEVQDLTETTEKVVVIIHADEQVGHGRVVTVMDRIRE
EEEECCCCCEEECCCCEEHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEHHHHHHHH
IEGAKLAIAATKKP
CCCCEEEEEECCCC
>Mature Secondary Structure
MRLPDDPSPSAQINIVPMIDVIFAILSFFIIATLFLNRSDALPVNLPQAKTVKPQLSTKV
CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCEEE
TVTIGETGDLALNREPIQLDALVTEVQDLTETTEKVVVIIHADEQVGHGRVVTVMDRIRE
EEEECCCCCEEECCCCEEHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEHHHHHHHH
IEGAKLAIAATKKP
CCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]