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The map label for this gene is pchR [H]

Identifier: 158336542

GI number: 158336542

Start: 3437837

End: 3438835

Strand: Reverse

Name: pchR [H]

Synonym: AM1_3406

Alternate gene names: 158336542

Gene position: 3438835-3437837 (Counterclockwise)

Preceding gene: 158336543

Following gene: 158336539

Centisome position: 52.87

GC content: 47.25

Gene sequence:

>999_bases
ATGGCACTTTTTCTGAAGGCAGCAGAGTTCACCCAGCTTTGTCAGCAGGGTCAAATAGAGTCTTCGTCTAGCACCGGATT
AGATCGCTCAACTCTGCTGCCCAGAAGCTTAGGCCAAGGTACCTATCGCCAGTTGCACCTGCGCGGTGGCTTAACCATTG
AAATTCGGGAGGGGGTCTTACAAGAAACTCTCCGAATTGAGCAAATCCATGAGCCCGAATTTCCGTTAACCTCTAAATTT
TTTCTGGCTGGATCGGCCAGGGTGGAGACACCTGGCATTCAAGGCATTCAGCCAGATTATTGGGAGCGAAAAGGGTTTAA
CTATCTATATCACCTGCCAGACTTAGAAGAAATTGAGGAGTGGCATGGGGGAGAAGCCATTCACCTAGTCATGATTTATG
CCAATACCGATTACTTTCACTTTCTACAGGATGATCAGACACTTCCCACCCCCTTACGCAATATTTTTCATGGCCGACAG
GCGCAGCATCGCTTCCACCAGTCCTTAGGCCCAATCTCTCCCAAAATGGAGCAGTTGCTTCAACAGGTGGTGGACTGTCC
TTACACAGGTGCAACCCAAGCCTTATATGTTGAAAGTAAAGCATTAGAGTTGCTCACGCTGCAGTTAGAAACTTGGAAGC
AGCAGTATCTAAATGTACCTACCTTACGAAAAGATGATATCGAACGTTTGCACCAGGCGCGGGATCTGTTGATTCAACAA
TCGGATAATCCTCCTCTCTTAATTGATTTAGCCCATCAAGTGGGATTGAACGATCGCAAGTTAAAACAAGGTTTTCGCCA
ACTGTTCGGCACGACTGTTTTTGGGTATTTACAGGACTATCGGATGAGACAAGCAAAGCAACTTTTGGCAGATGCCAACT
TGTCCATTGCTTCCGTGGCCTTGTCCGTGGGCTACCGCAATCCTGAAGCTTTTAGCACGGCCTTTCGCCGTAAATTTTCT
GTGAGTCCTAAAGCGTATCAGCTGAGTGTTAGAAGCTAG

Upstream 100 bases:

>100_bases
AACAATACCACCACCGATCCGACGTTTGGTCAGCGGCGGGCTCGCATTACCCAACCTGGCATTAATTTCGGGGTTGGCCT
GACGTTTGAATTCTAGGCAT

Downstream 100 bases:

>100_bases
AACATTATTGTTAGGCCATATTTCCTAGTGACACAAAACGTGTCTGCTTACTCTCTAAATGTCATCTTTCAACTGTTCTA
CGATTTGGTGAGTAGAGAGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MALFLKAAEFTQLCQQGQIESSSSTGLDRSTLLPRSLGQGTYRQLHLRGGLTIEIREGVLQETLRIEQIHEPEFPLTSKF
FLAGSARVETPGIQGIQPDYWERKGFNYLYHLPDLEEIEEWHGGEAIHLVMIYANTDYFHFLQDDQTLPTPLRNIFHGRQ
AQHRFHQSLGPISPKMEQLLQQVVDCPYTGATQALYVESKALELLTLQLETWKQQYLNVPTLRKDDIERLHQARDLLIQQ
SDNPPLLIDLAHQVGLNDRKLKQGFRQLFGTTVFGYLQDYRMRQAKQLLADANLSIASVALSVGYRNPEAFSTAFRRKFS
VSPKAYQLSVRS

Sequences:

>Translated_332_residues
MALFLKAAEFTQLCQQGQIESSSSTGLDRSTLLPRSLGQGTYRQLHLRGGLTIEIREGVLQETLRIEQIHEPEFPLTSKF
FLAGSARVETPGIQGIQPDYWERKGFNYLYHLPDLEEIEEWHGGEAIHLVMIYANTDYFHFLQDDQTLPTPLRNIFHGRQ
AQHRFHQSLGPISPKMEQLLQQVVDCPYTGATQALYVESKALELLTLQLETWKQQYLNVPTLRKDDIERLHQARDLLIQQ
SDNPPLLIDLAHQVGLNDRKLKQGFRQLFGTTVFGYLQDYRMRQAKQLLADANLSIASVALSVGYRNPEAFSTAFRRKFS
VSPKAYQLSVRS
>Mature_331_residues
ALFLKAAEFTQLCQQGQIESSSSTGLDRSTLLPRSLGQGTYRQLHLRGGLTIEIREGVLQETLRIEQIHEPEFPLTSKFF
LAGSARVETPGIQGIQPDYWERKGFNYLYHLPDLEEIEEWHGGEAIHLVMIYANTDYFHFLQDDQTLPTPLRNIFHGRQA
QHRFHQSLGPISPKMEQLLQQVVDCPYTGATQALYVESKALELLTLQLETWKQQYLNVPTLRKDDIERLHQARDLLIQQS
DNPPLLIDLAHQVGLNDRKLKQGFRQLFGTTVFGYLQDYRMRQAKQLLADANLSIASVALSVGYRNPEAFSTAFRRKFSV
SPKAYQLSVRS

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38043; Mature: 37912

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALFLKAAEFTQLCQQGQIESSSSTGLDRSTLLPRSLGQGTYRQLHLRGGLTIEIREGVL
CCEEEHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHCCCCCCEEEEECCCCEEEEHHHHH
QETLRIEQIHEPEFPLTSKFFLAGSARVETPGIQGIQPDYWERKGFNYLYHLPDLEEIEE
HHHHHHHHHCCCCCCCCCCEEEECCCEECCCCCCCCCCCHHHHCCCCEEEECCCHHHHHH
WHGGEAIHLVMIYANTDYFHFLQDDQTLPTPLRNIFHGRQAQHRFHQSLGPISPKMEQLL
HCCCCEEEEEEEEECCCEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHH
QQVVDCPYTGATQALYVESKALELLTLQLETWKQQYLNVPTLRKDDIERLHQARDLLIQQ
HHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEC
SDNPPLLIDLAHQVGLNDRKLKQGFRQLFGTTVFGYLQDYRMRQAKQLLADANLSIASVA
CCCCCEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LSVGYRNPEAFSTAFRRKFSVSPKAYQLSVRS
HHHCCCCHHHHHHHHHHHHCCCCCEEEEEECC
>Mature Secondary Structure 
ALFLKAAEFTQLCQQGQIESSSSTGLDRSTLLPRSLGQGTYRQLHLRGGLTIEIREGVL
CEEEHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHCCCCCCEEEEECCCCEEEEHHHHH
QETLRIEQIHEPEFPLTSKFFLAGSARVETPGIQGIQPDYWERKGFNYLYHLPDLEEIEE
HHHHHHHHHCCCCCCCCCCEEEECCCEECCCCCCCCCCCHHHHCCCCEEEECCCHHHHHH
WHGGEAIHLVMIYANTDYFHFLQDDQTLPTPLRNIFHGRQAQHRFHQSLGPISPKMEQLL
HCCCCEEEEEEEEECCCEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHH
QQVVDCPYTGATQALYVESKALELLTLQLETWKQQYLNVPTLRKDDIERLHQARDLLIQQ
HHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEC
SDNPPLLIDLAHQVGLNDRKLKQGFRQLFGTTVFGYLQDYRMRQAKQLLADANLSIASVA
CCCCCEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LSVGYRNPEAFSTAFRRKFSVSPKAYQLSVRS
HHHCCCCHHHHHHHHHHHHCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]