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The map label for this gene is pchR [H]

Identifier: 158336532

GI number: 158336532

Start: 3424450

End: 3425457

Strand: Reverse

Name: pchR [H]

Synonym: AM1_3396

Alternate gene names: 158336532

Gene position: 3425457-3424450 (Counterclockwise)

Preceding gene: 158336533

Following gene: 158336530

Centisome position: 52.67

GC content: 46.83

Gene sequence:

>1008_bases
ATGGTAATCACGCTAACCGATGCTGATATTACGGACCTGGTTGATGAAGCAGAGCAGAAAGGTGAATTGATCTGTCAACC
TATCGAAAATGGGATGCATTACAATTTGCCGCAACAGTGGGGGCAGGGCGGTGATCACATTCTGCATCTGCGCCCAGGAC
TGGATGTCTATATCCGCAATAGTCGTCTCAGACAACCCATGCGTTTTGTTCTAGAGCATGAGTCCAACTTCCCACTGGTG
GCTAAATTTTATCTATCGGGAACCTCGCGGGTGCAGACCCTCAATGCCACAGACATCAATTGCGACTATCGGGAAATTAC
TGGCTACCATTACCTCTATCATCTCCCCAATCACATTGAAGTTGAAGAGTGGCCTGCTGATCAGGAGCTACAGGTGATCA
TGATTTCCGTCAATCCTGATTACTTTAATGGCTTTAATCTCGAACGTACGGCTTTACCGAAGCCCCTTCAACATCTCCTA
GCAGGAGACAGAACGCAACGATTTCATCAATCGCTTGGACCCATAACTAATTCCATACGACAAAAGATCCAGCAAATTCT
GAACTGCCCTTATACAGGGCTGATGCAACAGCTTTATCTAGAAGGTAAAGTGCTAGAACTACTAACTGCTCAATTCATCG
CTTGGCAGGAAACCCAACATCAAACAATAATTCTGAACGCCCAAGATATAGAGCAACTCCATTGGGCCAAGGATATTTTA
GTCCAGCACGCTCAACAACCGCCCTCTCTGATAGAGCTAGCACGACGGGTGGGTCTTAATGATCGCAAACTCAATCAGGG
TTTTCGGCATCTATTTGGTACAACGGTGTTTGGCTATTTACAGCAATATCGCATGGAGCAAGCACAACTACTGTTGCAAG
ATCGCGAGTTGTCTGTTGCCAAGGTAGCAGCAACAGTTGGTTATCGCAGCCCAGAAGCGTTTAGTACTGCATTCCGGCGT
CAATTTGCGGTAAGCCCCAAAGCCTATCAACTGGGTCGTCGAGCTTAA

Upstream 100 bases:

>100_bases
GAGTATTTTGATTGCTTGGCCACGAGAGTAGCAGAAGGTCTCTGTTAAGCTGTACTTAAATGAGAATAAATCTCACTTAG
TATCAAGGCTTTAAGCAACA

Downstream 100 bases:

>100_bases
TTTTGGTACAGCACCAGACCTGGGAGCCGCACACTTTTGGTTGCCTGTGTTGCCTGGATGAGAGGTGTCATCCTAGGCGG
CACGAAGCTTGAAAGCCAAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MVITLTDADITDLVDEAEQKGELICQPIENGMHYNLPQQWGQGGDHILHLRPGLDVYIRNSRLRQPMRFVLEHESNFPLV
AKFYLSGTSRVQTLNATDINCDYREITGYHYLYHLPNHIEVEEWPADQELQVIMISVNPDYFNGFNLERTALPKPLQHLL
AGDRTQRFHQSLGPITNSIRQKIQQILNCPYTGLMQQLYLEGKVLELLTAQFIAWQETQHQTIILNAQDIEQLHWAKDIL
VQHAQQPPSLIELARRVGLNDRKLNQGFRHLFGTTVFGYLQQYRMEQAQLLLQDRELSVAKVAATVGYRSPEAFSTAFRR
QFAVSPKAYQLGRRA

Sequences:

>Translated_335_residues
MVITLTDADITDLVDEAEQKGELICQPIENGMHYNLPQQWGQGGDHILHLRPGLDVYIRNSRLRQPMRFVLEHESNFPLV
AKFYLSGTSRVQTLNATDINCDYREITGYHYLYHLPNHIEVEEWPADQELQVIMISVNPDYFNGFNLERTALPKPLQHLL
AGDRTQRFHQSLGPITNSIRQKIQQILNCPYTGLMQQLYLEGKVLELLTAQFIAWQETQHQTIILNAQDIEQLHWAKDIL
VQHAQQPPSLIELARRVGLNDRKLNQGFRHLFGTTVFGYLQQYRMEQAQLLLQDRELSVAKVAATVGYRSPEAFSTAFRR
QFAVSPKAYQLGRRA
>Mature_335_residues
MVITLTDADITDLVDEAEQKGELICQPIENGMHYNLPQQWGQGGDHILHLRPGLDVYIRNSRLRQPMRFVLEHESNFPLV
AKFYLSGTSRVQTLNATDINCDYREITGYHYLYHLPNHIEVEEWPADQELQVIMISVNPDYFNGFNLERTALPKPLQHLL
AGDRTQRFHQSLGPITNSIRQKIQQILNCPYTGLMQQLYLEGKVLELLTAQFIAWQETQHQTIILNAQDIEQLHWAKDIL
VQHAQQPPSLIELARRVGLNDRKLNQGFRHLFGTTVFGYLQQYRMEQAQLLLQDRELSVAKVAATVGYRSPEAFSTAFRR
QFAVSPKAYQLGRRA

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38688; Mature: 38688

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVITLTDADITDLVDEAEQKGELICQPIENGMHYNLPQQWGQGGDHILHLRPGLDVYIRN
CEEEEECCHHHHHHHHHHHCCCEEEEHHCCCCCCCCCHHHCCCCCEEEEECCCCEEEEEC
SRLRQPMRFVLEHESNFPLVAKFYLSGTSRVQTLNATDINCDYREITGYHYLYHLPNHIE
HHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEECCCCCCCCHHHHCCEEEEEECCCCCC
VEEWPADQELQVIMISVNPDYFNGFNLERTALPKPLQHLLAGDRTQRFHQSLGPITNSIR
CCCCCCCCCEEEEEEEECCCCCCCCCCCHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
QKIQQILNCPYTGLMQQLYLEGKVLELLTAQFIAWQETQHQTIILNAQDIEQLHWAKDIL
HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHH
VQHAQQPPSLIELARRVGLNDRKLNQGFRHLFGTTVFGYLQQYRMEQAQLLLQDRELSVA
HHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
KVAATVGYRSPEAFSTAFRRQFAVSPKAYQLGRRA
HHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCC
>Mature Secondary Structure
MVITLTDADITDLVDEAEQKGELICQPIENGMHYNLPQQWGQGGDHILHLRPGLDVYIRN
CEEEEECCHHHHHHHHHHHCCCEEEEHHCCCCCCCCCHHHCCCCCEEEEECCCCEEEEEC
SRLRQPMRFVLEHESNFPLVAKFYLSGTSRVQTLNATDINCDYREITGYHYLYHLPNHIE
HHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEECCCCCCCCHHHHCCEEEEEECCCCCC
VEEWPADQELQVIMISVNPDYFNGFNLERTALPKPLQHLLAGDRTQRFHQSLGPITNSIR
CCCCCCCCCEEEEEEEECCCCCCCCCCCHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
QKIQQILNCPYTGLMQQLYLEGKVLELLTAQFIAWQETQHQTIILNAQDIEQLHWAKDIL
HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHH
VQHAQQPPSLIELARRVGLNDRKLNQGFRHLFGTTVFGYLQQYRMEQAQLLLQDRELSVA
HHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
KVAATVGYRSPEAFSTAFRRQFAVSPKAYQLGRRA
HHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]