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The map label for this gene is hli [H]

Identifier: 158336500

GI number: 158336500

Start: 3398001

End: 3399017

Strand: Direct

Name: hli [H]

Synonym: AM1_3364

Alternate gene names: 158336500

Gene position: 3398001-3399017 (Clockwise)

Preceding gene: 158336499

Following gene: 158336501

Centisome position: 52.25

GC content: 49.46

Gene sequence:

>1017_bases
ATGACTGCGGGTACAGCGAGCTTGAGCGGTTATGAAGCGGAATGGTGGGCAGGCAATGTCCGCAACACCGATCTTTCTGG
CACGCTTCTGGGTGCCCACTTATGCCATGCAGCTCTGATGAGCTGTGTTCCCGGCGCTTTTATTATTCAAGAAGCTGCTC
GTTTTCAACCCGGCATACCACTATCTGAACAAGGGATGGTCTTTATGCCCCACCTGGCAGGCTTAGGGATTGCCGTGGGT
TCAGGCGGAGAGATATTGAGTACGTATCCTTATTTTGTGATTGGCGTTTTGCACTTCTTTGTGGCGGCATTCTGTTGTGC
GGGTGGACTATTCCACACCATTGCTGGAGAAGCGAAGCTAGGAGATTACCCTGAAGGTAGCTGGGCGGCTCAATTTGATT
ATGATTGGGACGACTTTGAGTCTCTCTCTTCTATTTTGGGCCATCACCTGCTTTGTTTAGGGGTTGCTTGCCTTCTATTC
GCATGCAATGCAGCCTTCGGTAATGGCTTATATGATCCATTAGTGGGTGAAGTGCGACAGATTACCCCCAACCTGAATCC
GATTACTCTAGTGGGTTACTTATTCGGATTTGCCAATGGTGGATGGACACCTTTGGGAATGGCCGCAGTCGACAATATGG
AAGACCTGGTTGGGGGACATTTCCTCGTCGCCATTGTTGATATTGCAGGGGCAGCCTTTCATATCATCAACAAGAAGCCG
ACAGCCTTTTTCAACAATCGGCTGATCTTTTCTTTCCCCAATGGTGGGGTGACGCGTGCTGGCATTTGCAATAGCGAAGC
GATCCTGTCTTATAGTGTGGCTTCCGTGGGTTTTATTGCCATTAGTTCTGCCATTTTTACCCAGTATTGCGATATCGCCT
TTGCCCCTGAGTTCTACGGTATTGATCGGTCTGGGGCTGCTTCTATCCAGCTGATTCTGGGATTGAACTGGATGGTCTTT
GGTGGCCTATGGCACAGTATTCGTGGCGAAAGGCTCCATGCCCTTAAGAATAAATAG

Upstream 100 bases:

>100_bases
AATACACCCAATGTTTGATTTTTAGTAACGATTTACCCTATCGAGGATTTAATTTATGACAGCATCTTTAACCAGACGCG
ACCCGATGGACAGGTCCGAG

Downstream 100 bases:

>100_bases
TTCTATGGGCCAGCATTGAGATGTGACGTTGTTCGAGTTCAGGATAGCTCTATCTAATGCTGGTCTATGGTTTTTGTCAG
TCACTCATGTTTCTTATCGC

Product: high light inducible protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MTAGTASLSGYEAEWWAGNVRNTDLSGTLLGAHLCHAALMSCVPGAFIIQEAARFQPGIPLSEQGMVFMPHLAGLGIAVG
SGGEILSTYPYFVIGVLHFFVAAFCCAGGLFHTIAGEAKLGDYPEGSWAAQFDYDWDDFESLSSILGHHLLCLGVACLLF
ACNAAFGNGLYDPLVGEVRQITPNLNPITLVGYLFGFANGGWTPLGMAAVDNMEDLVGGHFLVAIVDIAGAAFHIINKKP
TAFFNNRLIFSFPNGGVTRAGICNSEAILSYSVASVGFIAISSAIFTQYCDIAFAPEFYGIDRSGAASIQLILGLNWMVF
GGLWHSIRGERLHALKNK

Sequences:

>Translated_338_residues
MTAGTASLSGYEAEWWAGNVRNTDLSGTLLGAHLCHAALMSCVPGAFIIQEAARFQPGIPLSEQGMVFMPHLAGLGIAVG
SGGEILSTYPYFVIGVLHFFVAAFCCAGGLFHTIAGEAKLGDYPEGSWAAQFDYDWDDFESLSSILGHHLLCLGVACLLF
ACNAAFGNGLYDPLVGEVRQITPNLNPITLVGYLFGFANGGWTPLGMAAVDNMEDLVGGHFLVAIVDIAGAAFHIINKKP
TAFFNNRLIFSFPNGGVTRAGICNSEAILSYSVASVGFIAISSAIFTQYCDIAFAPEFYGIDRSGAASIQLILGLNWMVF
GGLWHSIRGERLHALKNK
>Mature_337_residues
TAGTASLSGYEAEWWAGNVRNTDLSGTLLGAHLCHAALMSCVPGAFIIQEAARFQPGIPLSEQGMVFMPHLAGLGIAVGS
GGEILSTYPYFVIGVLHFFVAAFCCAGGLFHTIAGEAKLGDYPEGSWAAQFDYDWDDFESLSSILGHHLLCLGVACLLFA
CNAAFGNGLYDPLVGEVRQITPNLNPITLVGYLFGFANGGWTPLGMAAVDNMEDLVGGHFLVAIVDIAGAAFHIINKKPT
AFFNNRLIFSFPNGGVTRAGICNSEAILSYSVASVGFIAISSAIFTQYCDIAFAPEFYGIDRSGAASIQLILGLNWMVFG
GLWHSIRGERLHALKNK

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 35948; Mature: 35816

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGTASLSGYEAEWWAGNVRNTDLSGTLLGAHLCHAALMSCVPGAFIIQEAARFQPGIP
CCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
LSEQGMVFMPHLAGLGIAVGSGGEILSTYPYFVIGVLHFFVAAFCCAGGLFHTIAGEAKL
CCCCCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC
GDYPEGSWAAQFDYDWDDFESLSSILGHHLLCLGVACLLFACNAAFGNGLYDPLVGEVRQ
CCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ITPNLNPITLVGYLFGFANGGWTPLGMAAVDNMEDLVGGHFLVAIVDIAGAAFHIINKKP
HCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHCCHHHHHHHHHHHHHEEEECCCC
TAFFNNRLIFSFPNGGVTRAGICNSEAILSYSVASVGFIAISSAIFTQYCDIAFAPEFYG
CEEECCEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHCC
IDRSGAASIQLILGLNWMVFGGLWHSIRGERLHALKNK
CCCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHCCC
>Mature Secondary Structure 
TAGTASLSGYEAEWWAGNVRNTDLSGTLLGAHLCHAALMSCVPGAFIIQEAARFQPGIP
CCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
LSEQGMVFMPHLAGLGIAVGSGGEILSTYPYFVIGVLHFFVAAFCCAGGLFHTIAGEAKL
CCCCCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC
GDYPEGSWAAQFDYDWDDFESLSSILGHHLLCLGVACLLFACNAAFGNGLYDPLVGEVRQ
CCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ITPNLNPITLVGYLFGFANGGWTPLGMAAVDNMEDLVGGHFLVAIVDIAGAAFHIINKKP
HCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHCCHHHHHHHHHHHHHEEEECCCC
TAFFNNRLIFSFPNGGVTRAGICNSEAILSYSVASVGFIAISSAIFTQYCDIAFAPEFYG
CEEECCEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHCC
IDRSGAASIQLILGLNWMVFGGLWHSIRGERLHALKNK
CCCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8986795; 9526503 [H]