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The map label for this gene is hli [H]

Identifier: 158336501

GI number: 158336501

Start: 3399253

End: 3400476

Strand: Direct

Name: hli [H]

Synonym: AM1_3366

Alternate gene names: 158336501

Gene position: 3399253-3400476 (Clockwise)

Preceding gene: 158336500

Following gene: 158336508

Centisome position: 52.27

GC content: 47.3

Gene sequence:

>1224_bases
ATGCAACTCAATATCAATCAATCTGAGTTTCCTTGGTATCAGGGCAATAGTCGTCTGATTGATCCCTCGGTACAAGGCAA
ATGGCTGGCTGCACATATTTTGCAGATGGCTATCATCATGTTTTGGGTCGGCATCAACACTTTGTCCGAGAATCAAGTGT
TTGATCCAGGCTTGCCCATGTATGACCAAGGCTTAGTCCTAATTCCGCATTTGGCCGCTGAAGGCTTTGGTGTCGGTGCT
GGTGGAGTGGTGACTAACCCAGGAGTGTATGTCCAAGTTGCCCTGGTGCATATGGTGGCAAGTGTGGTGCTGTTTTTTGG
TGCCTACTACCATGCCCAAATTGGACCTGCTGATCTGTCCCAAGGTGGACGGGGAAACACGGCCAAATTTTCCTTTGAAT
GGGATGATCCAAAACGGTTGGGATATATCCTGGGCAACCATTTAATCTTTATTGGTTTTGCCTCCTTGATCTTTGTCGGC
TGGATAAAATATCACGGTCTGTATGACCCCACCCTAGGCGAAGTCTGTGCTGTTACTCCCTCAATGGAGAACTTTACCAA
TATCTATAAATATGGGTGGTCAACCCCTGGGTATAATCCGTTTTTTGTTGATAACTTAGGTGATTTGGCAGCAGGTCATT
TTCTAGTGGGCCTACTGGATATTGCCGGTGGTATCTGGCATATTCTGGTTCCCCCATTTAAGTGGGAACAACGCTTGGGG
GCTCGACAAGATAATTACAGCGCTGATGGCTTAATTGGCCTTTCCCTGGGTGGCGTTGCCATTATGGGTTTTATCTCGGC
TTATTTCTGTGCGGTCAATACCTTTGTTTATCCAGTGGAGTTCTATGGCCCCGCTTTAGAGGTGAAGTTCAACCTTACTC
CTTACTTTAAGGACACGGCGGATTTTGCTGATGGTGTGTTCAGTTCTCGGGCCTGGTTGGCCAATATCACTTACTATTTG
GGCTTCTACTGTCTGCAAGGGCATTTATTCCATAGTCTAAAAGCCATGGGTGTGAAGTTTGAAGAGATCCCCAATGCCCT
CTCACAAACTTTTGTCCAAGAGCCATCGATTATTACAGGGGCGGCTCCAACGACTGATGCTGCTCCAGAGACAAAGGAAG
CGCCAGTAGATGAGACAACTCCCATGGAATCTACCGAGTCAGTGCCAGCTGCTGAGGCTTCTCAGGCTAACGAATCGGAC
AGTACAGAATCACCTCAAACTTAA

Upstream 100 bases:

>100_bases
TAGATTTTCACATTCATTTGTCGCAAGGAATGCCGTAAAGCAGTCGTTCTTGCTACATAGCTCTTTTTGAGCCGTTATTA
ATTATTTTTTGAATAGAACC

Downstream 100 bases:

>100_bases
ACAACAAGAGTTGATTTTGTAGCCTGTGGAGACGAGGTTTTTGAGAAAGGAGTGGTCAAAGTACAAGATGCCTAGATTGG
ACTGTACTGATTCAAACATC

Product: high light inducible protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MQLNINQSEFPWYQGNSRLIDPSVQGKWLAAHILQMAIIMFWVGINTLSENQVFDPGLPMYDQGLVLIPHLAAEGFGVGA
GGVVTNPGVYVQVALVHMVASVVLFFGAYYHAQIGPADLSQGGRGNTAKFSFEWDDPKRLGYILGNHLIFIGFASLIFVG
WIKYHGLYDPTLGEVCAVTPSMENFTNIYKYGWSTPGYNPFFVDNLGDLAAGHFLVGLLDIAGGIWHILVPPFKWEQRLG
ARQDNYSADGLIGLSLGGVAIMGFISAYFCAVNTFVYPVEFYGPALEVKFNLTPYFKDTADFADGVFSSRAWLANITYYL
GFYCLQGHLFHSLKAMGVKFEEIPNALSQTFVQEPSIITGAAPTTDAAPETKEAPVDETTPMESTESVPAAEASQANESD
STESPQT

Sequences:

>Translated_407_residues
MQLNINQSEFPWYQGNSRLIDPSVQGKWLAAHILQMAIIMFWVGINTLSENQVFDPGLPMYDQGLVLIPHLAAEGFGVGA
GGVVTNPGVYVQVALVHMVASVVLFFGAYYHAQIGPADLSQGGRGNTAKFSFEWDDPKRLGYILGNHLIFIGFASLIFVG
WIKYHGLYDPTLGEVCAVTPSMENFTNIYKYGWSTPGYNPFFVDNLGDLAAGHFLVGLLDIAGGIWHILVPPFKWEQRLG
ARQDNYSADGLIGLSLGGVAIMGFISAYFCAVNTFVYPVEFYGPALEVKFNLTPYFKDTADFADGVFSSRAWLANITYYL
GFYCLQGHLFHSLKAMGVKFEEIPNALSQTFVQEPSIITGAAPTTDAAPETKEAPVDETTPMESTESVPAAEASQANESD
STESPQT
>Mature_407_residues
MQLNINQSEFPWYQGNSRLIDPSVQGKWLAAHILQMAIIMFWVGINTLSENQVFDPGLPMYDQGLVLIPHLAAEGFGVGA
GGVVTNPGVYVQVALVHMVASVVLFFGAYYHAQIGPADLSQGGRGNTAKFSFEWDDPKRLGYILGNHLIFIGFASLIFVG
WIKYHGLYDPTLGEVCAVTPSMENFTNIYKYGWSTPGYNPFFVDNLGDLAAGHFLVGLLDIAGGIWHILVPPFKWEQRLG
ARQDNYSADGLIGLSLGGVAIMGFISAYFCAVNTFVYPVEFYGPALEVKFNLTPYFKDTADFADGVFSSRAWLANITYYL
GFYCLQGHLFHSLKAMGVKFEEIPNALSQTFVQEPSIITGAAPTTDAAPETKEAPVDETTPMESTESVPAAEASQANESD
STESPQT

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 44455; Mature: 44455

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNINQSEFPWYQGNSRLIDPSVQGKWLAAHILQMAIIMFWVGINTLSENQVFDPGLPM
CCCCCCCCCCCEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
YDQGLVLIPHLAAEGFGVGAGGVVTNPGVYVQVALVHMVASVVLFFGAYYHAQIGPADLS
CCCCEEEEEEHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC
QGGRGNTAKFSFEWDDPKRLGYILGNHLIFIGFASLIFVGWIKYHGLYDPTLGEVCAVTP
CCCCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCC
SMENFTNIYKYGWSTPGYNPFFVDNLGDLAAGHFLVGLLDIAGGIWHILVPPFKWEQRLG
CHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHC
ARQDNYSADGLIGLSLGGVAIMGFISAYFCAVNTFVYPVEFYGPALEVKFNLTPYFKDTA
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEECCCCCCCHH
DFADGVFSSRAWLANITYYLGFYCLQGHLFHSLKAMGVKFEEIPNALSQTFVQEPSIITG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEC
AAPTTDAAPETKEAPVDETTPMESTESVPAAEASQANESDSTESPQT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQLNINQSEFPWYQGNSRLIDPSVQGKWLAAHILQMAIIMFWVGINTLSENQVFDPGLPM
CCCCCCCCCCCEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
YDQGLVLIPHLAAEGFGVGAGGVVTNPGVYVQVALVHMVASVVLFFGAYYHAQIGPADLS
CCCCEEEEEEHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC
QGGRGNTAKFSFEWDDPKRLGYILGNHLIFIGFASLIFVGWIKYHGLYDPTLGEVCAVTP
CCCCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCC
SMENFTNIYKYGWSTPGYNPFFVDNLGDLAAGHFLVGLLDIAGGIWHILVPPFKWEQRLG
CHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHC
ARQDNYSADGLIGLSLGGVAIMGFISAYFCAVNTFVYPVEFYGPALEVKFNLTPYFKDTA
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEECCCCCCCHH
DFADGVFSSRAWLANITYYLGFYCLQGHLFHSLKAMGVKFEEIPNALSQTFVQEPSIITG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEC
AAPTTDAAPETKEAPVDETTPMESTESVPAAEASQANESDSTESPQT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8986795; 9526503 [H]