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The map label for this gene is csgD [C]

Identifier: 158336172

GI number: 158336172

Start: 3058596

End: 3059309

Strand: Reverse

Name: csgD [C]

Synonym: AM1_3034

Alternate gene names: 158336172

Gene position: 3059309-3058596 (Counterclockwise)

Preceding gene: 158336176

Following gene: 158336169

Centisome position: 47.04

GC content: 47.9

Gene sequence:

>714_bases
TTGAAGCTTTTATTTGAAGAAACTCACCAGTGTAAGCATGAGGATGACTTGCGATCGCACCTAGCGCCGAAGGTGGGTGA
GTACTTTACAGCGAAGCGATCAGGGATCTTTTTCTTTGACCAGCTTCTCTCGGAGCCTAAGTTTCAGGGCATTCTAAACA
TCGTTCTCTCCCTGGAACACAATCCGCTGGCGCGCTACCTTGCGGAATGCCATACCCCTGTCCATGAAGGATTAGTGACA
ACACCCAAAGCTTGGACATTGATCTGTCCTCGACCGGATCATTGGCATGTGATGGCAGGACCGATCGTTAACTGCGGTCA
GTTAGTCGGTGCAGTGGGTTGTACTCGCGAAAAATCGATGCCAGCCTTTGATCATCAGGATTTAGCTGATTTAAGTGCGG
TTTGTTTGCACCTGTCTACCTGGACGACTACAGTGCGATCGCAACAAAGCACCATGAACTCTCAGAACCCATTGTTGAGC
ACCAAACGGTTAACGCCGCGTGAGTTGGAGATCGCCAATTTAGTTGCTTTAGGACGAACCAATGCAGAAATTGGCAAGGA
ACTTTGGATCACCGAAAATTCTGTCAAACAGGCTCTAAAGCGAATGTTTCGTAAGCTCAAAGTTTCGTCGCGGACAAAAA
TGGTTGCACAACTTTTTGCGACACAAACTTGTAGTGTGCGTGAGGAAGAACCTCAATCCAACGCTCACCTGTAA

Upstream 100 bases:

>100_bases
CTTATTTTGATCGTTGTTGAATCTATCCCTATGCTATGAATAACGGCCCAGTGCGCCTAGTCCTCGATCGGGTACTCTTT
TCACGACCATGACTCTTTCT

Downstream 100 bases:

>100_bases
CCTTTCGCTTAGCTTTTATCAAGCAATTAGCAGTAGCAGCCGGACTGTGAGTATACATCAGTCGTATAACATATCTATGA
ATAATATTTACGTATAAAAC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: GAF Modulated Transcriptional Regulator LuxR Family; Transcriptional Regulator; LuxR Family GAF Modulated Transcriptional Regulator; Transcriptional Regulator LuxR Family Protein; Transcriptional Regulator LuxR Family; LuxR Family Transcriptional Regulatory Protein

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MKLLFEETHQCKHEDDLRSHLAPKVGEYFTAKRSGIFFFDQLLSEPKFQGILNIVLSLEHNPLARYLAECHTPVHEGLVT
TPKAWTLICPRPDHWHVMAGPIVNCGQLVGAVGCTREKSMPAFDHQDLADLSAVCLHLSTWTTTVRSQQSTMNSQNPLLS
TKRLTPRELEIANLVALGRTNAEIGKELWITENSVKQALKRMFRKLKVSSRTKMVAQLFATQTCSVREEEPQSNAHL

Sequences:

>Translated_237_residues
MKLLFEETHQCKHEDDLRSHLAPKVGEYFTAKRSGIFFFDQLLSEPKFQGILNIVLSLEHNPLARYLAECHTPVHEGLVT
TPKAWTLICPRPDHWHVMAGPIVNCGQLVGAVGCTREKSMPAFDHQDLADLSAVCLHLSTWTTTVRSQQSTMNSQNPLLS
TKRLTPRELEIANLVALGRTNAEIGKELWITENSVKQALKRMFRKLKVSSRTKMVAQLFATQTCSVREEEPQSNAHL
>Mature_237_residues
MKLLFEETHQCKHEDDLRSHLAPKVGEYFTAKRSGIFFFDQLLSEPKFQGILNIVLSLEHNPLARYLAECHTPVHEGLVT
TPKAWTLICPRPDHWHVMAGPIVNCGQLVGAVGCTREKSMPAFDHQDLADLSAVCLHLSTWTTTVRSQQSTMNSQNPLLS
TKRLTPRELEIANLVALGRTNAEIGKELWITENSVKQALKRMFRKLKVSSRTKMVAQLFATQTCSVREEEPQSNAHL

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26754; Mature: 26754

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLFEETHQCKHEDDLRSHLAPKVGEYFTAKRSGIFFFDQLLSEPKFQGILNIVLSLEH
CCCHHHHHHHCCCHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCC
NPLARYLAECHTPVHEGLVTTPKAWTLICPRPDHWHVMAGPIVNCGQLVGAVGCTREKSM
CHHHHHHHHHCCHHHCCCCCCCCCEEEECCCCCCCEEECCCHHHHHHHHHHHCCCCCCCC
PAFDHQDLADLSAVCLHLSTWTTTVRSQQSTMNSQNPLLSTKRLTPRELEIANLVALGRT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
NAEIGKELWITENSVKQALKRMFRKLKVSSRTKMVAQLFATQTCSVREEEPQSNAHL
CHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKLLFEETHQCKHEDDLRSHLAPKVGEYFTAKRSGIFFFDQLLSEPKFQGILNIVLSLEH
CCCHHHHHHHCCCHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCC
NPLARYLAECHTPVHEGLVTTPKAWTLICPRPDHWHVMAGPIVNCGQLVGAVGCTREKSM
CHHHHHHHHHCCHHHCCCCCCCCCEEEECCCCCCCEEECCCHHHHHHHHHHHCCCCCCCC
PAFDHQDLADLSAVCLHLSTWTTTVRSQQSTMNSQNPLLSTKRLTPRELEIANLVALGRT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
NAEIGKELWITENSVKQALKRMFRKLKVSSRTKMVAQLFATQTCSVREEEPQSNAHL
CHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA